BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645722|ref|NP_207899.1| pyruvate ferredoxin
oxidoreductase, gamma subunit [Helicobacter pylori 26695]
(186 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223752.1| Pyruvate ferrodoxin oxidoreductase [Helico... 364 e-103
ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 25 1.7
ref|NP_223047.1| 1-DEOXYXYLULOSE-5-PHOSPHATE SYNTHASE [Heli... 25 1.7
ref|NP_223772.1| putative TONB-INDEPENDENT PROTEIN-UPTAKE P... 24 2.8
ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter ... 23 3.7
ref|NP_222840.1| putative [Helicobacter pylori J99] 23 3.7
ref|NP_223990.1| putative [Helicobacter pylori J99] 23 4.8
ref|NP_223363.1| Outer membrane protein/porin [Helicobacter... 23 4.8
ref|NP_224144.1| putative IRON(III) DICITRATE TRANSPORT PRO... 22 8.3
ref|NP_223887.1| RIBONUCLEASE II FAMILY PROTEIN [Helicobact... 22 8.3
ref|NP_223368.1| putative [Helicobacter pylori J99] 22 8.3
ref|NP_223257.1| SUBUNIT OF 2-OXOGLUTARATE OXIDOREDUCTASE [... 22 8.3
ref|NP_222988.1| putative [Helicobacter pylori J99] 22 8.3
>ref|NP_223752.1| Pyruvate ferrodoxin oxidoreductase [Helicobacter pylori J99]
Length = 186
Score = 364 bits (934), Expect = e-103
Identities = 185/186 (99%), Positives = 185/186 (99%)
Query: 1 MFQIRWHARAGQGAITGAKGLADVISKTGKEVQAFASYGSAKRGAAMMAYNRVDDEPILN 60
MFQIRWHARAGQGAITGAKGLADVISKTGKEVQAFASYGSAKRGAAMMAYNRVDDEPILN
Sbjct: 1 MFQIRWHARAGQGAITGAKGLADVISKTGKEVQAFASYGSAKRGAAMMAYNRVDDEPILN 60
Query: 61 HERFMQPDYVLVIDPGLVFIENIFANEKEDTTYIITSYLNKEELFEKKPELKTRKVFLVD 120
HERFMQPDYVLVIDPGLVFIENIFANEKEDTTYIITSYLNKEELFEKKPELKTRKVFLVD
Sbjct: 61 HERFMQPDYVLVIDPGLVFIENIFANEKEDTTYIITSYLNKEELFEKKPELKTRKVFLVD 120
Query: 121 CLKISMETLKRPIPNTPMLGALMKVSGMLEIGAFKEAFKKVLGKKLTQEVIDANMLAIQR 180
CLKISMETLKRPIPNTPMLGALMKVSGMLEI AFKEAFKKVLGKKLTQEVIDANMLAIQR
Sbjct: 121 CLKISMETLKRPIPNTPMLGALMKVSGMLEIEAFKEAFKKVLGKKLTQEVIDANMLAIQR 180
Query: 181 AYEEVQ 186
AYEEVQ
Sbjct: 181 AYEEVQ 186
>ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 815
Score = 24.6 bits (52), Expect = 1.7
Identities = 29/128 (22%), Positives = 52/128 (39%), Gaps = 23/128 (17%)
Query: 66 QPDYVLV-------IDPGLVFIENIFANEKEDTTYIITSYLNKEELFEKKPELKTRKVFL 118
+PD+++ + P + + F E ++ + + KE L ++ E + + L
Sbjct: 621 EPDFIVQKTYYKSDLIPKHLIKQRFFEKETKELEELENALNEKEALLDEFIEEHSNEEGL 680
Query: 119 VDCLKISMETLKRPIPNTPMLGALMKVSGMLEIGAFKEAFKKVLGKKLTQEVIDANMLAI 178
D LKI+ LK+ + N L + LE + EA K L K
Sbjct: 681 FDGLKINESVLKKELKNATDLEDKQILKTALE---WLEAKNKALKMK------------- 724
Query: 179 QRAYEEVQ 186
+AYEE++
Sbjct: 725 NKAYEELE 732
>ref|NP_223047.1| 1-DEOXYXYLULOSE-5-PHOSPHATE SYNTHASE [Helicobacter pylori J99]
Length = 618
Score = 24.6 bits (52), Expect = 1.7
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 105 FEKKPELKTRKVFLVDCLKISMETLKRPIPNTPMLGALMKVSGMLEIGAFKEAFKKVLGK 164
+E EL RK ++ L + ++ PI GAL K L G F ++F+ + K
Sbjct: 151 YEALNELGDRKYPMIMILNDNEMSISTPI------GALSKALSQLMKGPFYQSFRSKVKK 204
Query: 165 KLTQEVIDANMLA 177
L+ N LA
Sbjct: 205 ILSTLPESVNYLA 217
>ref|NP_223772.1| putative TONB-INDEPENDENT PROTEIN-UPTAKE PROTEIN [Helicobacter
pylori J99]
Length = 417
Score = 23.9 bits (50), Expect = 2.8
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 80 IENIFANEKEDTTYIITSYLNKEELFEKKPELKTRKVFLVDCLKISME 127
+ + AN+ + + + S NKE+ ELK +KV LV + +++E
Sbjct: 49 LHEVLANDLKTSQHFDVSQ-NKEQGAINYAELKDKKVHLVALVSVAVE 95
>ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 969
Score = 23.5 bits (49), Expect = 3.7
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 84 FANEKEDTTYIITSYLNKEELFEKKPELKTRK 115
F + +D + +T LN+ E +K+PEL+ K
Sbjct: 594 FGEKTDDENFKLT--LNQNEFLKKEPELEKLK 623
>ref|NP_222840.1| putative [Helicobacter pylori J99]
Length = 285
Score = 23.5 bits (49), Expect = 3.7
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 73 IDPGLVFIENIFANEKEDTTYIITSYLNKEE 103
+DP ++F E+ N K+D ++ S ++ E+
Sbjct: 28 VDPNVMFSESSTGNVKKDRKRVLKSMVDLEK 58
>ref|NP_223990.1| putative [Helicobacter pylori J99]
Length = 1164
Score = 23.1 bits (48), Expect = 4.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 153 AFKEAFKKVLGKKLTQEVIDANML 176
AFKE FKK L + T ++I N L
Sbjct: 419 AFKEEFKKPLKENDTLKIILTNTL 442
>ref|NP_223363.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 270
Score = 23.1 bits (48), Expect = 4.8
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 14/63 (22%)
Query: 4 IRWHARAGQGAITGAKGL------------ADVISK-TGKEVQAFASYGSAKRGAAMMAY 50
I WH++ GA+ G GL D+ SK G V YG A G + A
Sbjct: 71 INWHSKYANGALNGF-GLNVGYKKFFQFKSLDMTSKWFGFRVYGLFDYGHADLGKQVYAP 129
Query: 51 NRV 53
N++
Sbjct: 130 NKI 132
>ref|NP_224144.1| putative IRON(III) DICITRATE TRANSPORT PROTEIN [Helicobacter pylori
J99]
Length = 841
Score = 22.3 bits (46), Expect = 8.3
Identities = 13/53 (24%), Positives = 22/53 (40%)
Query: 55 DEPILNHERFMQPDYVLVIDPGLVFIENIFANEKEDTTYIITSYLNKEELFEK 107
+ P+ + +P L+++ G V I TT++ YLN E K
Sbjct: 405 ENPVRSINNAFEPKVNLIVNTGKVRQTFIMGLRFMTTTFLQRQYLNTNECATK 457
>ref|NP_223887.1| RIBONUCLEASE II FAMILY PROTEIN [Helicobacter pylori J99]
Length = 644
Score = 22.3 bits (46), Expect = 8.3
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 17/71 (23%)
Query: 109 PELKTRKVFL--VDCLKISMETLKRPIP---------NTPMLGALMKVSGMLEIGAFKEA 157
P KT + L ++C K KRPI + M+ L K + FKE
Sbjct: 77 PSFKTDALILCQIECSK------KRPIAFFKAALLNADHAMIAYLAKEKNQIVAIPFKEP 130
Query: 158 FKKVLGKKLTQ 168
FKK + K +Q
Sbjct: 131 FKKPISLKHSQ 141
>ref|NP_223368.1| putative [Helicobacter pylori J99]
Length = 406
Score = 22.3 bits (46), Expect = 8.3
Identities = 11/27 (40%), Positives = 15/27 (54%)
Query: 79 FIENIFANEKEDTTYIITSYLNKEELF 105
F EN F N +D ++ I + EELF
Sbjct: 310 FTENEFKNRYKDKSHQIVFTKDAEELF 336
>ref|NP_223257.1| SUBUNIT OF 2-OXOGLUTARATE OXIDOREDUCTASE [Helicobacter pylori
J99]
Length = 184
Score = 22.3 bits (46), Expect = 8.3
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 3 QIRWHARAGQGAITGAKGLADVISKTGKEVQAFASYGSAKRGAAMMAYNRVD-DEPILNH 61
Q+R+ GQG + + LA+ +G ++Y S RG +D DE I +
Sbjct: 4 QLRFTGVGGQGVLLAGEILAEAKIVSGGYGTKTSTYTSQVRGGPTKVDILLDKDEIIFPY 63
Query: 62 ERFMQPDYVLVI 73
+ + D++L +
Sbjct: 64 AKEGEIDFMLSV 75
>ref|NP_222988.1| putative [Helicobacter pylori J99]
Length = 478
Score = 22.3 bits (46), Expect = 8.3
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 100 NKEELFEKKPELKTRKVFLVDCLKISMETLKRPIPNTP 137
+ E+ E E K K+ L+D ++ +PN P
Sbjct: 105 DSEKTLENNEENKDEKLILIDEFEVLANKFISRLPNIP 142
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.320 0.136 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 181,070
Number of Sequences: 1491
Number of extensions: 8201
Number of successful extensions: 32
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 13
length of query: 186
length of database: 494,079
effective HSP length: 73
effective length of query: 113
effective length of database: 385,236
effective search space: 43531668
effective search space used: 43531668
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)