BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645723|ref|NP_207900.1| pyruvate ferredoxin
oxidoreductase, delta subunit [Helicobacter pylori 26695]
(130 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223753.1| Pyruvate ferrodoxin oxidoreductase [Helico... 290 1e-80
ref|NP_223254.1| SUBUNIT OF 2-OXOGLUTARATE OXIDOREDUCTASE [... 35 0.001
ref|NP_224119.1| putative ferredoxin-like protein [Helicoba... 30 0.022
ref|NP_222983.1| Ferredoxin [Helicobacter pylori J99] 28 0.084
ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori... 28 0.11
ref|NP_223907.1| NADH oxidoreductase I [Helicobacter pylori... 27 0.25
ref|NP_222847.1| putative [Helicobacter pylori J99] 27 0.25
ref|NP_223861.1| D-LACTATE DEHYDROGENASE [Helicobacter pylo... 24 1.6
ref|NP_223375.1| putative [Helicobacter pylori J99] 24 1.6
ref|NP_223297.1| putative [Helicobacter pylori J99] 23 3.5
ref|NP_223553.1| Hydrogenase expression/formation protein [... 22 4.6
ref|NP_223061.1| putative Outer membrane protein [Helicobac... 22 6.0
ref|NP_222840.1| putative [Helicobacter pylori J99] 22 7.9
>ref|NP_223753.1| Pyruvate ferrodoxin oxidoreductase [Helicobacter pylori J99]
Length = 130
Score = 290 bits (741), Expect = 1e-80
Identities = 130/130 (100%), Positives = 130/130 (100%)
Query: 1 MKDWNEFEMGAVLFPFEKNAQSEMEKHNDERHYTEQSYFTTSVAHWRVAKPVHNNNICIN 60
MKDWNEFEMGAVLFPFEKNAQSEMEKHNDERHYTEQSYFTTSVAHWRVAKPVHNNNICIN
Sbjct: 1 MKDWNEFEMGAVLFPFEKNAQSEMEKHNDERHYTEQSYFTTSVAHWRVAKPVHNNNICIN 60
Query: 61 CFNCWVYCPDAAILSREGKLKGVDYSHCKGCGVCVDVCPTNPKSLWMFEEQIEPATALTQ 120
CFNCWVYCPDAAILSREGKLKGVDYSHCKGCGVCVDVCPTNPKSLWMFEEQIEPATALTQ
Sbjct: 61 CFNCWVYCPDAAILSREGKLKGVDYSHCKGCGVCVDVCPTNPKSLWMFEEQIEPATALTQ 120
Query: 121 WPQKQEKKKS 130
WPQKQEKKKS
Sbjct: 121 WPQKQEKKKS 130
>ref|NP_223254.1| SUBUNIT OF 2-OXOGLUTARATE OXIDOREDUCTASE [Helicobacter pylori J99]
Length = 113
Score = 34.7 bits (78), Expect = 0.001
Identities = 14/47 (29%), Positives = 24/47 (50%)
Query: 77 EGKLKGVDYSHCKGCGVCVDVCPTNPKSLWMFEEQIEPATALTQWPQ 123
+G V+ CKGC +CV VCP + + +E++ A +P+
Sbjct: 8 DGVAVWVNEDRCKGCDICVSVCPAGVLGMGIEKERVLGKVAKVAYPE 54
Score = 28.1 bits (61), Expect = 0.084
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 47 RVAKPVHNNNICINCFNCWVYCPDAAILSREGK 79
+VAK + + CI C C ++CPD AI + K
Sbjct: 46 KVAKVAYPES-CIGCVQCELHCPDFAIYVADRK 77
>ref|NP_224119.1| putative ferredoxin-like protein [Helicobacter pylori J99]
Length = 458
Score = 30.0 bits (66), Expect = 0.022
Identities = 14/43 (32%), Positives = 20/43 (45%), Gaps = 6/43 (13%)
Query: 56 NICINCFNCWVYCPDAAILSREGKLKGVDYSHCKGCGVCVDVC 98
N C+NC +C CP + + +L+ C C CVD C
Sbjct: 247 NECVNCLHCVQVCPTHIDIRKGLQLE------CINCLECVDAC 283
Score = 23.5 bits (49), Expect = 2.1
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 86 SHCKGCGVCVDVCPTN 101
+ C C CV VCPT+
Sbjct: 247 NECVNCLHCVQVCPTH 262
>ref|NP_222983.1| Ferredoxin [Helicobacter pylori J99]
Length = 84
Score = 28.1 bits (61), Expect = 0.084
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 10/55 (18%)
Query: 55 NNICINCFNCWVYCPDAAILSREG-KLKGVDYSHCKGC-------GVCVDVCPTN 101
N+ CI C C CP AI EG + +D C C CV VCP +
Sbjct: 6 NDECIACDACREECPSEAI--EEGDPIYSIDPDRCTECYGYDDDEPRCVSVCPVD 58
>ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 849
Score = 27.7 bits (60), Expect = 0.11
Identities = 21/86 (24%), Positives = 30/86 (34%), Gaps = 30/86 (34%)
Query: 49 AKPVHNNNICINCFNCWVYCPD----------------------------AAILSR--EG 78
AK +++ N+CI C C C D ++ SR +G
Sbjct: 134 AKALYDPNLCIMCERCVTTCKDNVGENNLKATKADLHAPDKFKDSMSKDAFSVWSRKQKG 193
Query: 79 KLKGVDYSHCKGCGVCVDVCPTNPKS 104
+ V C CG C+ VCP S
Sbjct: 194 IISFVGSVPCYDCGECIAVCPVGALS 219
>ref|NP_223907.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 220
Score = 26.6 bits (57), Expect = 0.25
Identities = 16/51 (31%), Positives = 19/51 (36%), Gaps = 9/51 (17%)
Query: 58 CINCFNCWVYCPDAAIL----SREGKLKGVD-----YSHCKGCGVCVDVCP 99
CI C C C I E K +D C CG+C +VCP
Sbjct: 82 CIGCGLCEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCP 132
Score = 24.6 bits (52), Expect = 0.93
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 88 CKGCGVCVDVCPTN 101
C GCG+C +C +N
Sbjct: 82 CIGCGLCEKICTSN 95
>ref|NP_222847.1| putative [Helicobacter pylori J99]
Length = 481
Score = 26.6 bits (57), Expect = 0.25
Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 20/62 (32%)
Query: 58 CINCFNCWVYCP-------DAAILSREGKLKGV---------DYSH----CKGCGVCVDV 97
CI C C +CP A + + G + V +Y H C CG C +V
Sbjct: 314 CIRCGTCLNHCPVYDKIGGHAYLSTYPGPIGVVVSPQLFGLNNYGHIPNLCSLCGRCTEV 373
Query: 98 CP 99
CP
Sbjct: 374 CP 375
Score = 21.9 bits (45), Expect = 6.0
Identities = 7/16 (43%), Positives = 9/16 (55%)
Query: 88 CKGCGVCVDVCPTNPK 103
C CG C++ CP K
Sbjct: 314 CIRCGTCLNHCPVYDK 329
>ref|NP_223861.1| D-LACTATE DEHYDROGENASE [Helicobacter pylori J99]
Length = 946
Score = 23.9 bits (50), Expect = 1.6
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 88 CKGCGVCVDVCPTNPKSL 105
C CG C +CP+ SL
Sbjct: 546 CMECGFCERICPSKDLSL 563
>ref|NP_223375.1| putative [Helicobacter pylori J99]
Length = 140
Score = 23.9 bits (50), Expect = 1.6
Identities = 10/30 (33%), Positives = 15/30 (49%)
Query: 77 EGKLKGVDYSHCKGCGVCVDVCPTNPKSLW 106
E K KG+ K G+ V VC + + +W
Sbjct: 97 EEKTKGLSAEEIKAKGLNVSVCSGDTRKVW 126
>ref|NP_223297.1| putative [Helicobacter pylori J99]
Length = 137
Score = 22.7 bits (47), Expect = 3.5
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 5 NEFEMGAVLFPFEKNAQSEMEKHNDERHY 33
N+ + G + KN SE E ND++ Y
Sbjct: 29 NDKKSGKKFYKLHKNHGSETETKNDKKLY 57
>ref|NP_223553.1| Hydrogenase expression/formation protein [Helicobacter pylori
J99]
Length = 370
Score = 22.3 bits (46), Expect = 4.6
Identities = 7/15 (46%), Positives = 11/15 (72%)
Query: 81 KGVDYSHCKGCGVCV 95
K ++++H GC VCV
Sbjct: 58 KNLEFAHGPGCPVCV 72
>ref|NP_223061.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 479
Score = 21.9 bits (45), Expect = 6.0
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 3 DWNEFEMGAVLFPFEKNAQS 22
D+NEF G + KNA +
Sbjct: 336 DYNEFNFGGAFYKVWKNANA 355
>ref|NP_222840.1| putative [Helicobacter pylori J99]
Length = 285
Score = 21.6 bits (44), Expect = 7.9
Identities = 7/22 (31%), Positives = 11/22 (49%)
Query: 16 FEKNAQSEMEKHNDERHYTEQS 37
F+K + E+E H D + S
Sbjct: 195 FQKRSSGELESHTDSPEFISSS 216
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.319 0.132 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 135,120
Number of Sequences: 1491
Number of extensions: 4967
Number of successful extensions: 24
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 20
length of query: 130
length of database: 494,079
effective HSP length: 68
effective length of query: 62
effective length of database: 392,691
effective search space: 24346842
effective search space used: 24346842
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 44 (21.6 bits)