BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644644|ref|NP_206813.1| co-chaperone (groES)
[Helicobacter pylori 26695]
(118 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222731.1| 10kDa chaperone [Helicobacter pylori J99] 249 1e-68
ref|NP_223376.1| putative [Helicobacter pylori J99] 27 0.16
ref|NP_224038.1| putative histidine-rich metal-binding prot... 25 0.45
ref|NP_223434.1| ACONITATE HYDRATASE [Helicobacter pylori J99] 25 0.59
ref|NP_223091.1| putative [Helicobacter pylori J99] 25 0.59
ref|NP_223946.1| 50S RIBOSOMAL PROTEIN L24 [Helicobacter py... 24 1.3
ref|NP_223718.1| GLUTAMATE DEHYDROGENASE [Helicobacter pylo... 23 1.7
ref|NP_223890.1| putative Peptide ABC transporter, ATP-bind... 23 2.2
ref|NP_224110.1| putative [Helicobacter pylori J99] 23 2.9
ref|NP_223796.1| putative SIGNAL RECOGNITION PARTICLE PROTE... 22 6.5
ref|NP_224147.1| ZINC-DEPENDENT ALCOHOL DEHYDROGENASE [Heli... 21 8.5
ref|NP_223359.1| DNA GYRASE SUBUNIT A [Helicobacter pylori ... 21 8.5
ref|NP_223260.1| putative [Helicobacter pylori J99] 21 8.5
ref|NP_222987.1| QUEUINE TRNA-RIBOSYLTRANSFERASE [Helicobac... 21 8.5
>ref|NP_222731.1| 10kDa chaperone [Helicobacter pylori J99]
Length = 118
Score = 249 bits (636), Expect = 1e-68
Identities = 118/118 (100%), Positives = 118/118 (100%)
Query: 1 MKFQPLGERVLVERLEEENKTSSGIIIPDNAKEKPLMGVVKAVSHKISEGCKCVKEGDVI 60
MKFQPLGERVLVERLEEENKTSSGIIIPDNAKEKPLMGVVKAVSHKISEGCKCVKEGDVI
Sbjct: 1 MKFQPLGERVLVERLEEENKTSSGIIIPDNAKEKPLMGVVKAVSHKISEGCKCVKEGDVI 60
Query: 61 AFGKYKGAEIVLDGTEYMVLELEDILGIVGSGSCCHTGNHDHKHAKEHEACCHDHKKH 118
AFGKYKGAEIVLDGTEYMVLELEDILGIVGSGSCCHTGNHDHKHAKEHEACCHDHKKH
Sbjct: 61 AFGKYKGAEIVLDGTEYMVLELEDILGIVGSGSCCHTGNHDHKHAKEHEACCHDHKKH 118
>ref|NP_223376.1| putative [Helicobacter pylori J99]
Length = 152
Score = 26.9 bits (58), Expect = 0.16
Identities = 15/43 (34%), Positives = 19/43 (43%), Gaps = 9/43 (20%)
Query: 82 LEDILGIVGSGSCCHTGNHDH---------KHAKEHEACCHDH 115
+ED+ G SC H H H KH K+H+ HDH
Sbjct: 101 MEDMDDDFGLRSCKHGKKHKHDKHGKKHGKKHDKDHDDKDHDH 143
>ref|NP_224038.1| putative histidine-rich metal-binding protein [Helicobacter pylori
J99]
Length = 60
Score = 25.4 bits (54), Expect = 0.45
Identities = 9/22 (40%), Positives = 11/22 (49%), Gaps = 4/22 (18%)
Query: 94 CCHTGNHDHKHAKEHEACCHDH 115
CC T + H + E CCH H
Sbjct: 41 CCSTSDSHH----QEEGCCHGH 58
Score = 22.7 bits (47), Expect = 2.9
Identities = 8/21 (38%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 99 NHDHKHAKEH-EACCHDHKKH 118
+H H H+ H E CC H
Sbjct: 28 HHHHHHSSHHEEGCCSTSDSH 48
>ref|NP_223434.1| ACONITATE HYDRATASE [Helicobacter pylori J99]
Length = 852
Score = 25.0 bits (53), Expect = 0.59
Identities = 21/65 (32%), Positives = 28/65 (42%), Gaps = 1/65 (1%)
Query: 19 NKTSSGIIIPDNAKEKPLMGVVKAVSHKISEGCKCVKEGDVIAFGKYKGAEIVLDGTEYM 78
NK S GI+I + + I K +KEGD+I YKG EI L+
Sbjct: 259 NKRSGGIVIGGVIAPIFFATCEDSGALPIVADVKDLKEGDIIKIYPYKG-EITLNDKVVS 317
Query: 79 VLELE 83
+LE
Sbjct: 318 TFKLE 322
>ref|NP_223091.1| putative [Helicobacter pylori J99]
Length = 194
Score = 25.0 bits (53), Expect = 0.59
Identities = 15/35 (42%), Positives = 21/35 (59%), Gaps = 2/35 (5%)
Query: 47 ISEGCKCVKEGDVIAFGKYKGAEIVLDGTEYMVLE 81
I G K + EG V +G +GA IV G EY++L+
Sbjct: 118 IHNGAKIISEGSVSVYGVCEGA-IVCFG-EYLILK 150
>ref|NP_223946.1| 50S RIBOSOMAL PROTEIN L24 [Helicobacter pylori J99]
Length = 73
Score = 23.9 bits (50), Expect = 1.3
Identities = 10/28 (35%), Positives = 15/28 (52%)
Query: 29 DNAKEKPLMGVVKAVSHKISEGCKCVKE 56
D K ++ V+ S + EGCK VK+
Sbjct: 18 DKGKVAKVLAVLPKTSQVVVEGCKVVKK 45
>ref|NP_223718.1| GLUTAMATE DEHYDROGENASE [Helicobacter pylori J99]
Length = 448
Score = 23.5 bits (49), Expect = 1.7
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 47 ISEGCKCVKEG 57
+S GCKCV EG
Sbjct: 337 LSNGCKCVAEG 347
>ref|NP_223890.1| putative Peptide ABC transporter, ATP-binding protein
[Helicobacter pylori J99]
Length = 348
Score = 23.1 bits (48), Expect = 2.2
Identities = 9/22 (40%), Positives = 15/22 (67%)
Query: 29 DNAKEKPLMGVVKAVSHKISEG 50
+N + K + GVVK S++ S+G
Sbjct: 43 NNTQSKEIQGVVKERSYRASQG 64
>ref|NP_224110.1| putative [Helicobacter pylori J99]
Length = 306
Score = 22.7 bits (47), Expect = 2.9
Identities = 12/32 (37%), Positives = 19/32 (58%), Gaps = 1/32 (3%)
Query: 43 VSHKISEGCKCVKEGDV-IAFGKYKGAEIVLD 73
+S I+EG + + + +AF KY G EI+ D
Sbjct: 14 ISKVINEGLRNSLDTHIAVAFLKYSGVEIIQD 45
>ref|NP_223796.1| putative SIGNAL RECOGNITION PARTICLE PROTEIN [Helicobacter pylori
J99]
Length = 448
Score = 21.6 bits (44), Expect = 6.5
Identities = 10/16 (62%), Positives = 12/16 (74%)
Query: 6 LGERVLVERLEEENKT 21
LGE+V VE EENK+
Sbjct: 144 LGEQVGVEVFHEENKS 159
>ref|NP_224147.1| ZINC-DEPENDENT ALCOHOL DEHYDROGENASE [Helicobacter pylori J99]
Length = 365
Score = 21.2 bits (43), Expect = 8.5
Identities = 12/42 (28%), Positives = 21/42 (49%), Gaps = 5/42 (11%)
Query: 75 TEYMVLELEDILGIVGSGSCCHTGNHDHKHAKEHEACCHDHK 116
T++ V + + +V S CHT H+H+ E C ++K
Sbjct: 87 TKFKVGDHAGVGCMVNSCGECHTCKHEHQ-----EQWCENNK 123
>ref|NP_223359.1| DNA GYRASE SUBUNIT A [Helicobacter pylori J99]
Length = 828
Score = 21.2 bits (43), Expect = 8.5
Identities = 15/47 (31%), Positives = 21/47 (43%)
Query: 10 VLVERLEEENKTSSGIIIPDNAKEKPLMGVVKAVSHKISEGCKCVKE 56
VL E + NK I D A+EK + G+ + EG + V E
Sbjct: 262 VLGEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVVIE 308
>ref|NP_223260.1| putative [Helicobacter pylori J99]
Length = 490
Score = 21.2 bits (43), Expect = 8.5
Identities = 15/53 (28%), Positives = 26/53 (48%), Gaps = 5/53 (9%)
Query: 30 NAKEKPLMGVVKAVSHKISEGCKCVKEGDVIAFGKYKGAEIVLDGTEYMVLEL 82
NAK K G+ + V + +K+ + AF K +V+D T+ +LE+
Sbjct: 406 NAKLKEKRGLGELVISAL-----VLKDNKLYAFSKEFNTLLVIDPTKEEILEV 453
>ref|NP_222987.1| QUEUINE TRNA-RIBOSYLTRANSFERASE [Helicobacter pylori J99]
Length = 371
Score = 21.2 bits (43), Expect = 8.5
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 53 CVKEGDVIAFGKYKGAEIVLDGTEYMVL 80
C+K D + + GA+++L T +M L
Sbjct: 37 CIKSLDAMDAQEILGAKLILANTYHMYL 64
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.316 0.137 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 128,667
Number of Sequences: 1491
Number of extensions: 5345
Number of successful extensions: 20
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 15
length of query: 118
length of database: 494,079
effective HSP length: 67
effective length of query: 51
effective length of database: 394,182
effective search space: 20103282
effective search space used: 20103282
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 43 (21.2 bits)