BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645729|ref|NP_207906.1| hypothetical protein
[Helicobacter pylori 26695]
(228 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223759.1| putative [Helicobacter pylori J99] 363 e-102
ref|NP_223159.1| putative [Helicobacter pylori J99] 249 4e-68
ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 38 2e-04
ref|NP_222772.1| putative [Helicobacter pylori J99] 38 3e-04
ref|NP_222774.1| putative [Helicobacter pylori J99] 35 0.002
ref|NP_223781.1| ATP synthase F0, subunit b [Helicobacter p... 34 0.003
ref|NP_223801.1| putative Outer membrane protein [Helicobac... 33 0.006
ref|NP_222812.1| methyl-accepting chemotaxis protein (MCP) ... 33 0.008
ref|NP_223274.1| putative vacuolating cytotoxin (VacA) para... 31 0.024
ref|NP_222995.1| putative vacuolating cytotoxin (VacA) para... 30 0.041
ref|NP_223574.1| putative vacuolating cytotoxin (VacA) para... 30 0.070
ref|NP_224153.1| putative [Helicobacter pylori J99] 29 0.091
ref|NP_224063.1| putative thiophene/furan oxidation protein... 29 0.12
ref|NP_223764.1| FLAGELLAR HOOK-ASSOCIATED PROTEIN 1 (HAP1)... 29 0.12
ref|NP_222961.1| putative [Helicobacter pylori J99] 28 0.16
ref|NP_224090.1| putative [Helicobacter pylori J99] 28 0.20
ref|NP_223205.1| cag island protein [Helicobacter pylori J99] 28 0.20
ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN... 28 0.26
ref|NP_223739.1| putative Outer membrane protein [Helicobac... 27 0.59
ref|NP_223054.1| septum formation protein [Helicobacter pyl... 27 0.59
ref|NP_222886.1| putative [Helicobacter pylori J99] 27 0.59
ref|NP_223387.1| putative [Helicobacter pylori J99] 26 0.77
ref|NP_223380.1| putative Outer membrane protein [Helicobac... 26 1.0
ref|NP_223017.1| putative [Helicobacter pylori J99] 26 1.0
ref|NP_222935.1| Outer membrane protein/porin [Helicobacter... 25 1.7
ref|NP_223963.1| FUMARASE [Helicobacter pylori J99] 25 2.2
ref|NP_223594.1| ALANINE RACEMASE [Helicobacter pylori J99] 25 2.2
ref|NP_222834.1| THREONYL-TRNA SYNTHETASE [Helicobacter pyl... 25 2.2
ref|NP_223238.1| putative [Helicobacter pylori J99] 24 2.9
ref|NP_223971.1| putative [Helicobacter pylori J99] 24 3.8
ref|NP_223656.1| putative [Helicobacter pylori J99] 24 3.8
ref|NP_223531.1| putative [Helicobacter pylori J99] 24 3.8
ref|NP_222797.1| methyl-accepting chemotaxis protein (MCP) ... 24 3.8
ref|NP_223567.1| Outer membrane protein/porin [Helicobacter... 23 5.0
ref|NP_223301.1| POLYNUCLEOTIDE ADENYLYLTRANSFERASE [Helico... 23 5.0
ref|NP_223209.1| cag island protein [Helicobacter pylori J99] 23 5.0
ref|NP_222997.1| putative [Helicobacter pylori J99] 23 5.0
ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [He... 23 5.0
ref|NP_222770.1| Proline/pyrroline-5-carboxylate dehydrogen... 23 5.0
ref|NP_222743.1| putative Outer membrane protein [Helicobac... 23 5.0
ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter ... 23 6.5
ref|NP_223339.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 ALP... 23 6.5
ref|NP_222729.1| putative Outer membrane protein [Helicobac... 23 6.5
ref|NP_224013.1| putative ENDONUCLEASE [Helicobacter pylori... 23 8.5
ref|NP_223377.1| putative Outer membrane protein [Helicobac... 23 8.5
ref|NP_222962.1| putative [Helicobacter pylori J99] 23 8.5
>ref|NP_223759.1| putative [Helicobacter pylori J99]
Length = 267
Score = 363 bits (933), Expect = e-102
Identities = 188/226 (83%), Positives = 205/226 (90%)
Query: 2 INYPNLPNSALEITEQPEVKEITNELLKQLQNALNSNSLFSEQVELSLKGIVRILEVLLS 61
+NYPNLPNSALEI+EQPEVKEITNELLKQLQNAL SN+ FSEQVELSLK IVRILEVLLS
Sbjct: 1 MNYPNLPNSALEISEQPEVKEITNELLKQLQNALRSNAHFSEQVELSLKCIVRILEVLLS 60
Query: 62 LDFFKNANEIDSSLRNSIEWLNNAGESLKTKMKEYEGFFSDFNTSMRTNEQEVSATLNAN 121
LDFFKNANEIDSSLRNSIEWL NAGESLK KMKEYE FFS+FNTSM NEQEV+ TLNAN
Sbjct: 61 LDFFKNANEIDSSLRNSIEWLTNAGESLKLKMKEYERFFSEFNTSMHANEQEVTNTLNAN 120
Query: 122 TENIKSEIKKLENQLIETTTRLLTSYQIFLNNARDSANNQITANKTESLEALNQAKTSAN 181
ENIKSEIKKLENQLIETTTRLLTSYQIFLN ARD+ANNQIT NKT+SLEA+ QAK +AN
Sbjct: 121 AENIKSEIKKLENQLIETTTRLLTSYQIFLNQARDNANNQITKNKTQSLEAITQAKNNAN 180
Query: 182 NEITANQTQALTNINEAKENANNQITENKTQAITNINEAKNQSLSK 227
NEI+ NQTQA+TNI EAK NANN+I+ N+TQAITNINEAK + ++
Sbjct: 181 NEISNNQTQAITNITEAKTNANNEISNNQTQAITNINEAKESATTQ 226
>ref|NP_223159.1| putative [Helicobacter pylori J99]
Length = 181
Score = 249 bits (636), Expect = 4e-68
Identities = 128/143 (89%), Positives = 136/143 (94%)
Query: 2 INYPNLPNSALEITEQPEVKEITNELLKQLQNALNSNSLFSEQVELSLKGIVRILEVLLS 61
+NYPNLPNS LEIT+QPEVKEITNELLKQLQNAL+SN+LF+EQVELSLKGIVRILEVLLS
Sbjct: 1 MNYPNLPNSTLEITQQPEVKEITNELLKQLQNALHSNALFTEQVELSLKGIVRILEVLLS 60
Query: 62 LDFFKNANEIDSSLRNSIEWLNNAGESLKTKMKEYEGFFSDFNTSMRTNEQEVSATLNAN 121
LDFFKNANEIDSSLRNSIEWL+NAGESLKTKMKEYE FFS+FNTSM NEQEV+ATLNAN
Sbjct: 61 LDFFKNANEIDSSLRNSIEWLSNAGESLKTKMKEYERFFSEFNTSMHANEQEVTATLNAN 120
Query: 122 TENIKSEIKKLENQLIETTTRLL 144
TENIKSEIKKLENQLIE T LL
Sbjct: 121 TENIKSEIKKLENQLIEETRMLL 143
>ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 815
Score = 38.1 bits (87), Expect = 2e-04
Identities = 37/161 (22%), Positives = 74/161 (44%), Gaps = 20/161 (12%)
Query: 28 LKQLQNALNSNSLFSEQV------ELSLKGIVRILEVLLSLDFFKNANEIDSS--LRNSI 79
L++L+NALN ++ E L ++I E +L + KNA +++ L+ ++
Sbjct: 653 LEELENALNEKEALLDEFIEEHSNEEGLFDGLKINESVLKKEL-KNATDLEDKQILKTAL 711
Query: 80 EWLNNAGESLKTKMKEYEGF-FSDFNTSMRTNEQEV------SATLNANTENIKSEIKKL 132
EWL ++LK K K YE F+ E+ LN+ ++++I+K
Sbjct: 712 EWLEAKNKALKMKNKAYEELELKAFHQYKNLEINEIKDLIIKDKWLNSLKNALENKIQKR 771
Query: 133 ENQLIETTTRLLTSYQIFLNNARDSANNQITANKTESLEAL 173
N +++SY +N+ + ++ ++++ LE L
Sbjct: 772 TNAFASALNEIISSY----SNSLLELDKEVKESESKVLEHL 808
Score = 31.6 bits (70), Expect = 0.018
Identities = 40/156 (25%), Positives = 56/156 (35%), Gaps = 37/156 (23%)
Query: 87 ESLKTKMKEYEGFFSDFNTSMRTNEQEVSATLNANTENIKSEIKKLENQLIETTTRLLTS 146
E L+ + E E +F +NE+ + L N +K E+K
Sbjct: 654 EELENALNEKEALLDEF-IEEHSNEEGLFDGLKINESVLKKELK---------------- 696
Query: 147 YQIFLNNARDSANNQITANKTESLEALNQAKTSANN-----EITANQTQALTNINEAKE- 200
NA D + QI E LEA N+A N E+ A INE K+
Sbjct: 697 ------NATDLEDKQILKTALEWLEAKNKALKMKNKAYEELELKAFHQYKNLEINEIKDL 750
Query: 201 -------NANNQITENKTQAITN-INEAKNQSLSKH 228
N+ ENK Q TN A N+ +S +
Sbjct: 751 IIKDKWLNSLKNALENKIQKRTNAFASALNEIISSY 786
>ref|NP_222772.1| putative [Helicobacter pylori J99]
Length = 220
Score = 37.7 bits (86), Expect = 3e-04
Identities = 41/160 (25%), Positives = 71/160 (43%), Gaps = 13/160 (8%)
Query: 64 FFKNANEIDSSLRNSIEWLNNAGESLK-TKMKEYEGFFSDFNTSMRTNEQEVSATLNANT 122
F K++N+ + +++++ N + K T+ E T E+E + L A+
Sbjct: 2 FGKSSNDTQENPKDALKSTNFHEKHTKPTETTELVEENKALTTEKERLERE-NKNLTADK 60
Query: 123 ENIKSEIKKLENQLIETTTRLLTSYQIFLNNARDSANNQITANKTESLEALNQAKTSANN 182
EN+ E +L+ Q+ E L S Q+ N D + N T+ E L + KT
Sbjct: 61 ENLTKEKTELQKQVNE----LKNSKQVLENEKADWLREK--ENLTKDRENLTKEKT---- 110
Query: 183 EITANQTQALTNINEAKENANNQITENKTQAITNINEAKN 222
E+T + + LT E +T+ KT++ +NE KN
Sbjct: 111 ELT-EKNKVLTTEKERLATEKENLTKEKTESQKQVNELKN 149
Score = 37.0 bits (84), Expect = 4e-04
Identities = 33/139 (23%), Positives = 62/139 (43%), Gaps = 9/139 (6%)
Query: 87 ESLKTKMKEYEGFFSDFNTSMRTNEQEVSATLNANTENIKSEIKKLENQLIETT--TRLL 144
E+L + E + ++ S + E E + L EN+ + + L + E T ++L
Sbjct: 61 ENLTKEKTELQKQVNELKNSKQVLENEKADWLREK-ENLTKDRENLTKEKTELTEKNKVL 119
Query: 145 TSYQIFLNNARDSANNQITANKTESLEALNQAKTSANNEITANQTQALTNINEAKENANN 204
T+ + L +++ +T KTES + +N+ K S ++ N+ LTN N +
Sbjct: 120 TTEKERLATEKEN----LTKEKTESQKQVNELKNS--KQVLENEKADLTNENTKLKTDKT 173
Query: 205 QITENKTQAITNINEAKNQ 223
+TE + T E N+
Sbjct: 174 DLTEKNQRLTTEKTELNNK 192
>ref|NP_222774.1| putative [Helicobacter pylori J99]
Length = 327
Score = 34.7 bits (78), Expect = 0.002
Identities = 36/159 (22%), Positives = 64/159 (39%), Gaps = 23/159 (14%)
Query: 83 NNAGESLKTKMKEYEGFFSDFNTSM---RTNEQEVSATLNANTENIKSEIKKLENQLIET 139
NN K ++K + + NT + R E L E +K E +L +++ E
Sbjct: 99 NNKLTKEKAELKTEKDILAKENTRLLAARDRLTEEKRELTTEKERLKRENTELTHKITE- 157
Query: 140 TTRLLTSYQIFLNNARDSANNQITA--NKTESLEALNQAKTSAN-------------NEI 184
LT L D N+Q+TA N+ +SLE A+ N+
Sbjct: 158 ----LTKENKALTTENDKLNHQVTALTNERDSLEQERARLQDAHGFLEKRCTNLEKENQR 213
Query: 185 TANQTQALTNINEAKENANNQITENKTQAITNINEAKNQ 223
++ + L + ++ EN NNQ+ + + + +AK +
Sbjct: 214 LTDKLKQLESAQKSLENTNNQLRQALENSNVQLAQAKEK 252
>ref|NP_223781.1| ATP synthase F0, subunit b [Helicobacter pylori J99]
Length = 171
Score = 34.3 bits (77), Expect = 0.003
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 8/107 (7%)
Query: 61 SLDFFKNANEIDSSLRNSIEWLNNAGESLKTKMKEYEGFFSDFNTSMRTNEQEVSATLNA 120
SL+ K EI + L+ S E + L+ ++ E SD N T Q+
Sbjct: 59 SLEISKRLEEIQAQLKVSKEHKKKLLKELEQAKEKAELIISDANKEAYTITQKYELQTKM 118
Query: 121 NTENIKS--------EIKKLENQLIETTTRLLTSYQIFLNNARDSAN 159
+ EN+ E+KK++ +L+E+ + L + NA+D N
Sbjct: 119 DVENLIKNSKALMDLEVKKIKRELVESVFKDLRESKKVSFNAQDCVN 165
>ref|NP_223801.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 1237
Score = 33.1 bits (74), Expect = 0.006
Identities = 29/117 (24%), Positives = 50/117 (41%), Gaps = 19/117 (16%)
Query: 110 NEQEVSATLNANTENIKSEIKKLENQLIETTTRLLTSYQIFLNNARDSANNQITANKTES 169
N QEV A L +++ ++++E+ + +TT+ T Q L+N D+ N ++N T
Sbjct: 172 NSQEVKAQLQNTAQSMAELLQQIEHSITKTTS--TTYAQSLLSNLTDAVN--ASSNNTTY 227
Query: 170 LEALNQAKTSANNEI--TANQTQALTN-------------INEAKENANNQITENKT 211
+ AL A + + T T + N + N+NNQ N T
Sbjct: 228 VSALVNALNTLGVGVFPTTTSTHVVLNPPGQVVFYPTNSLLGSTSSNSNNQQQYNNT 284
>ref|NP_222812.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 675
Score = 32.7 bits (73), Expect = 0.008
Identities = 18/79 (22%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 66 KNANEIDSSLRNSIEWLNNAGESLKTKMKEYEGFFSDFNTSMRTNEQEVSATLNANTEN- 124
K+ +EI++++ ++ +++ ES+K ++KE E + N S+ L +++
Sbjct: 598 KSLSEIEANINILVQSISDTSESIKNQVKEVE----EINASIEALRSVTEGNLKIASDSL 653
Query: 125 -IKSEIKKLENQLIETTTR 142
I EI K+ N ++E +
Sbjct: 654 EISQEIDKVSNDILEDVNK 672
>ref|NP_223274.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 3194
Score = 31.2 bits (69), Expect = 0.024
Identities = 38/165 (23%), Positives = 56/165 (33%), Gaps = 11/165 (6%)
Query: 57 EVLLSLDFFKNANEIDSSLRNSIEWLNNAGESLKTK------MKEYEGFFSDFNTSMRTN 110
++ L L F + +S+ WLN+ E+ K ++ + G F T N
Sbjct: 56 KIFLGLGFVSALSAQSEDYNSSVYWLNSVNENNNNKSYYISPLRTWAGGNRSF-TQNYNN 114
Query: 111 EQEVSATLNANTENIKSEIKKLENQLIETTTRLLTSYQIFLNNARDSANNQITANKT--- 167
Q T NA+ S + E I T + + IF+ A S N T
Sbjct: 115 SQLYIGTKNASATPNHSSVWFGEKGYIGFITGVFKARDIFITGAVGSGNELKTGGGAILV 174
Query: 168 -ESLEALNQAKTSANNEITANQTQALTNINEAKENANNQITENKT 211
ES L N QT + I+ N N N+T
Sbjct: 175 FESSNELTTNGAYFQNNRAGTQTSWINLISNNSVNLTNTDFGNQT 219
Score = 23.5 bits (49), Expect = 5.0
Identities = 20/95 (21%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
Query: 130 KKLENQLIETTTRLLTSYQIFLNNARDSANNQITANKTESLEALNQAKTSANNEITANQT 189
K+++ L+E + ++ F+ N + N ++L+ + ANN +
Sbjct: 2227 KEIDQMLLEQIQAHSSGFEKFIVKTLGIENVENFINNWYGKQSLS---SFANNFVPGGLN 2283
Query: 190 QALTNINEAKENANNQITENKTQAITNINEAKNQS 224
QAL I + + + Q +KT +N+ NQ+
Sbjct: 2284 QALDKIGSSSDAKDLQSFLDKTTFGDILNQMINQA 2318
>ref|NP_222995.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2902
Score = 30.4 bits (67), Expect = 0.041
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 169 SLEALNQAKTSANNEITANQTQA-LTNINEAKENANNQITEN 209
SL +L+ K A N++T T + NINE +NANN + +N
Sbjct: 1708 SLSSLSNLKGDALNQLTKLITPSDWKNINELIDNANNSVVQN 1749
Score = 28.1 bits (61), Expect = 0.20
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 160 NQITANKTESLEALNQAKTSANNEITANQTQALTNINEAKENANNQITEN 209
N I ++ S+ A N + ++ N T +L N+N++ N +N T N
Sbjct: 1332 NAINLSQNASINASNHSTLELQGDLNLNDTSSL-NLNQSAINVSNNATIN 1380
>ref|NP_223574.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2399
Score = 29.6 bits (65), Expect = 0.070
Identities = 46/203 (22%), Positives = 80/203 (38%), Gaps = 40/203 (19%)
Query: 33 NALNSNSLFSEQVELSLKGIVRILEVLLSLDFFKNANEIDSSLRNSIEWLNNAGESLKTK 92
N LNS+ + E ++ L+++ N N +++ N L N +S +
Sbjct: 1120 NPLNSSQIIQESIKNGD----------LTIEVLNNPNSASNTIFNIAPELYNYQDSKQNP 1169
Query: 93 MKEYEGFFSDFNTSMRTNEQEVSATLNANTENIKSEIKKLENQLIETTTRLLTSYQIFLN 152
G+ D++ + A T + S IK L T + +Y F N
Sbjct: 1170 T----GYSYDYSDNQ------------AGTYYLTSNIKGLFTPKGSQTPQTPGTYSPF-N 1212
Query: 153 NARDSANNQITANKTESLEAL----NQAKTSANNEITANQTQALTNINEAKENANN-QIT 207
+S N +E+L+ L +Q + I +NQ +TNINE + + +IT
Sbjct: 1213 QPLNSLNIYNKGFSSENLKTLLGILSQNSATLKEMIESNQLDNITNINEVLQLLDKIKIT 1272
Query: 208 ENKTQAI--------TNINEAKN 222
+ + QA+ NIN+ N
Sbjct: 1273 QAQKQALLETINHLTDNINQTFN 1295
Score = 27.7 bits (60), Expect = 0.26
Identities = 29/114 (25%), Positives = 47/114 (40%), Gaps = 5/114 (4%)
Query: 115 SATLNANTENIKSEIKKLENQLI---ETTTRLLTSYQIFLNNARDSA-NNQITANKTESL 170
++ NA T+ + + L +Q + T L + I L N +A N +T + +L
Sbjct: 848 TSNFNATTQLLGNTSFTLSSQSLLNFNGDTTLQNNANITLGNKSQAAFKNSLTLDNNSNL 907
Query: 171 EALNQAKTSANNEITANQTQALTNINEAKENANNQITENKTQAITNINEAKNQS 224
NQ+ +AN +A QA NI + A + + N N N N S
Sbjct: 908 SLDNQSVLNANG-TSAFNNQASLNIYNGSQAAFSSLFFNGGTLSLNANSKLNAS 960
>ref|NP_224153.1| putative [Helicobacter pylori J99]
Length = 435
Score = 29.3 bits (64), Expect = 0.091
Identities = 30/143 (20%), Positives = 58/143 (39%), Gaps = 21/143 (14%)
Query: 99 FFSDFNTSMRTNEQEVSATLNANTENIKSEIKKLEN--------QLIETTTRLLTSYQIF 150
F S + + + ++ LNA E +K +++KLE+ + ++T LL +YQ
Sbjct: 173 FLSYQHKELEHKKNQIIKRLNAQKERLKEKLEKLEDPKTLQLEAKELQTQASLLLTYQHL 232
Query: 151 LNNARDSANNQITANKTESLEALNQAKTSANNEITANQTQALTNINEAK--------ENA 202
+N N++ E E + + S N+ L+ + K EN
Sbjct: 233 INR----RENRVILKDFEDKECMIEIDKSMPLNAFINKKFTLSKKKKQKSQFLYLEEENL 288
Query: 203 NNQITENKTQAITNINEAKNQSL 225
+I + Q I + +A +S+
Sbjct: 289 KEKIAFKENQ-INYVRDAAEESV 310
>ref|NP_224063.1| putative thiophene/furan oxidation protein [Helicobacter pylori
J99]
Length = 461
Score = 28.9 bits (63), Expect = 0.12
Identities = 26/153 (16%), Positives = 63/153 (40%), Gaps = 7/153 (4%)
Query: 82 LNNAGESLKTKMKEYEGFFSDFNTSMRTNEQEVSATLNANTENIKSEIKKLENQLIETTT 141
L AGE K ++ S+ S++ E + LNA +K E+K +
Sbjct: 113 LAKAGEFSKKAFLNHKMDLSEIEASVQLILCEDESVLNALARQLKGELKIFIEEARNNLL 172
Query: 142 RLLTSYQIFLNNARDSANN----QITANKTESLEALNQAKTSANNEITANQTQALTNI-- 195
+LL S ++ ++ + + + +++ N + + + +N + N+ AL+ +
Sbjct: 173 KLLASSEVLIDYSEEDIPSDFLKEVSFNLEKQIASFKDLLDFSNAQKQRNKGHALSIVGK 232
Query: 196 -NEAKENANNQITENKTQAITNINEAKNQSLSK 227
N K + N + + +++I ++ +
Sbjct: 233 PNAGKSSLLNAMLLEERALVSDIKGTTRDTIEE 265
>ref|NP_223764.1| FLAGELLAR HOOK-ASSOCIATED PROTEIN 1 (HAP1) [Helicobacter pylori
J99]
Length = 606
Score = 28.9 bits (63), Expect = 0.12
Identities = 23/84 (27%), Positives = 37/84 (43%), Gaps = 6/84 (7%)
Query: 146 SYQIFLNNARDSANNQITANKTESLEALNQAKTSANNEITANQTQALTNINEAKENANNQ 205
S++ NA+DSA Q A KTE+L + + ++ L ++ + + +Q
Sbjct: 120 SWKELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQ 179
Query: 206 ITE-NKTQAITNINEAKNQSLSKH 228
I E NK I E +N KH
Sbjct: 180 IAEINK-----RIKEVENNKSLKH 198
>ref|NP_222961.1| putative [Helicobacter pylori J99]
Length = 142
Score = 28.5 bits (62), Expect = 0.16
Identities = 25/116 (21%), Positives = 47/116 (39%), Gaps = 8/116 (6%)
Query: 29 KQLQNALNSNSLFSEQVELSLKGIVRILEVLLSLDFFKNANEIDSSLRNSIEWLNNAGES 88
K+L+ N + +Q +LS L + F ++ S+LR IE+ GE+
Sbjct: 26 KRLELQQNEREVLDKQAQLSAFKNPE----LGGMSLFLQTQQLKSALRMEIEYYQQEGEN 81
Query: 89 LKTKMKEYEGFFSDFNTSMRTNEQEVSATLNANTENIKSEIKKLENQLIETTTRLL 144
L +K E + N + ++ L + K ++K E L++ +L
Sbjct: 82 LTKDLKILEKDYLLANQEL----EKAKIILEKEKQKEKEILEKKEQALLDENAMIL 133
>ref|NP_224090.1| putative [Helicobacter pylori J99]
Length = 841
Score = 28.1 bits (61), Expect = 0.20
Identities = 24/95 (25%), Positives = 40/95 (41%), Gaps = 5/95 (5%)
Query: 123 ENIKSEIKKLENQLIETTTRLLTSYQIFLNNARDSANNQITANKTESLEALNQAKT---- 178
+ I S+I L+ L +T +++ +S + F + I SL AL A +
Sbjct: 25 KGIHSKIPSLKQALEQTISKIKSSKEFFKQLLHNKKKLYIALGILLSLIALIVALSLLLG 84
Query: 179 -SANNEITANQTQALTNINEAKENANNQITENKTQ 212
N+ T+ QT T NE + NN E + +
Sbjct: 85 HKKENKQTSLQTNTATTNNETPNDTNNAEAEGQIE 119
>ref|NP_223205.1| cag island protein [Helicobacter pylori J99]
Length = 237
Score = 28.1 bits (61), Expect = 0.20
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 123 ENIKSEIKKLENQLIETTTRLLTSYQIFLNNARDSANNQI 162
E+I S +K+L+N ET ++L + + SANN+I
Sbjct: 21 EDITSGLKQLDNTYQETNQQVLKNLDEIFSTTSPSANNKI 60
>ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN 3 (HAP3) [Helicobacter
pylori J99]
Length = 828
Score = 27.7 bits (60), Expect = 0.26
Identities = 33/138 (23%), Positives = 58/138 (41%), Gaps = 13/138 (9%)
Query: 2 INYPNLPNSALEITEQPEVKEITNELLKQLQNALNSNSLFSEQVELSLKGIVRILEVLLS 61
I PNLP + L+I P + ++ N +K L++A+ VE+ G +RI
Sbjct: 415 IKIPNLPIN-LDI---PILLDVKNSTIKDLKDAIKERFNNEVDVEIETNGRLRI------ 464
Query: 62 LDFFKNANEIDSSLRN-SIEWLNNAGESLKTKMKEYEGFFSDFNTSMRTNEQEVSATLNA 120
+D + I +L + L AG + + +F+ + +N + + A
Sbjct: 465 IDNSSKESPISFALSTLDQKGLEVAGIPTNNASEYQKTYFNKEGAKLESNVAQTAQNDAA 524
Query: 121 NTENIKSEIKK--LENQL 136
N SE+ K LEN +
Sbjct: 525 NGSTKLSEVSKGSLENSV 542
Score = 24.3 bits (51), Expect = 2.9
Identities = 15/62 (24%), Positives = 30/62 (48%)
Query: 33 NALNSNSLFSEQVELSLKGIVRILEVLLSLDFFKNANEIDSSLRNSIEWLNNAGESLKTK 92
N + N+L S++ L L ++ S++FF I +S+R I + G++ +
Sbjct: 676 NDFSQNALHSDKPSLKLNANNALIIDKPSVNFFDQLENIITSVRKGIYRPDALGDTYSSD 735
Query: 93 MK 94
M+
Sbjct: 736 MR 737
>ref|NP_223739.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 511
Score = 26.6 bits (57), Expect = 0.59
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 1 MINYPNLPNSALEI-TEQPEVKEITNELLKQLQNALNSNSLFSEQVELSLKGIVRILEVL 59
+IN P N+ + + + +K + L+ NAL +N+L ++ L+LK + + +
Sbjct: 165 LINRPAYANAKVSLQADFNSLKPLEGHLILTANNALINNALINQIFHLNLKDTL-VFNLS 223
Query: 60 LSLDFFKNANEIDSSLRNSI 79
S DF N D++L + +
Sbjct: 224 HSSDFKGNKAISDTTLTSPL 243
>ref|NP_223054.1| septum formation protein [Helicobacter pylori J99]
Length = 844
Score = 26.6 bits (57), Expect = 0.59
Identities = 17/51 (33%), Positives = 24/51 (46%), Gaps = 1/51 (1%)
Query: 162 ITANKTESLEALNQAKTSANNEITANQTQALTNINEAKENANNQITENKTQ 212
I+A+ TE+ + KT N+ I + Q N KEN I E +TQ
Sbjct: 290 ISASNTENHDKTENHKTP-NHPIKEDDLQESPQENPQKENIEENIEEKETQ 339
>ref|NP_222886.1| putative [Helicobacter pylori J99]
Length = 406
Score = 26.6 bits (57), Expect = 0.59
Identities = 22/111 (19%), Positives = 47/111 (41%), Gaps = 2/111 (1%)
Query: 120 ANTENIKSEIKKLENQLIETTTRLLTSYQIFLNNARDSANNQITANKTESLEALNQAKTS 179
++ +NI++++KKL + L+E + + N ++N +TA K L+ S
Sbjct: 39 SDNKNIRADVKKLVSILLEYNKTIACENLLNNKNEIINSNFPLTAYKNVIEYFLSHGYYS 98
Query: 180 ANNEITANQTQALTNINEA--KENANNQITENKTQAITNINEAKNQSLSKH 228
N N + N ++ K Q NK + + K + ++++
Sbjct: 99 ENKSYYENNAKGRINFSKTIKKNRPIIQTFNNKNSFVYTRFQVKRKMINEN 149
>ref|NP_223387.1| putative [Helicobacter pylori J99]
Length = 371
Score = 26.2 bits (56), Expect = 0.77
Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 12/117 (10%)
Query: 101 SDFNTSMRTNEQEVSATLNANTENIKSEIKKLENQLIETTTRLLTSYQIFLNNARDSANN 160
S+ N +++ E+ + + I IK+ + E L S F+++ SA +
Sbjct: 78 SNCNKALKVVEELQNTIKTTIEKQIDPGIKETQEHQQEARFNLDRSTDKFISDLEKSAFS 137
Query: 161 QITANKTESLEALNQAKTSANNEITANQTQALTNINEAKENANNQITENKTQAITNI 217
+I NQ + + E+ + + N NE KE N++ + KT+ I +I
Sbjct: 138 KI-----------NQFEFNFRKEMHERIERGIGN-NECKEIFGNELKQRKTKLIEDI 182
>ref|NP_223380.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 651
Score = 25.8 bits (55), Expect = 1.0
Identities = 53/263 (20%), Positives = 107/263 (40%), Gaps = 40/263 (15%)
Query: 3 NYPNLPNSALEITEQPEVKEITNELLKQLQNALN-SNSLFSEQVELSLKGIVRILEVLLS 61
N + N A+ T ++K++ +L QNA +N+L + + +G V +
Sbjct: 152 NCSGIENCAMNQTTYDKMKKLAEDLQAAQQNATTKANNLCALSGCATTQGQNPSSTVSNA 211
Query: 62 LDFFKNANEIDSSLRNSIEWLNN--AGESLKTKMKEYEGF---FSDFNT----------- 105
L+ + ++ ++ + ++ W N AG S + + G+ ++ FN
Sbjct: 212 LNLAQQLMDLIANTKTAMMWKNIVIAGVSNVSGAIDSTGYPTQYAVFNNIKAMIPILQQA 271
Query: 106 -SMRTNEQEVSATLNANTENIKSEIKKLEN--QLIETTTRLLTSYQIFLNNARDSANNQI 162
++ + +SA+L A ++ K ++ + ++++ Q N +Q
Sbjct: 272 VTLSQSNHTLSASLQAQATGSQTNPKFAKDIYAFAQNQKQVISYAQDIFNLFSSIPKDQY 331
Query: 163 TANKTESLEALNQAKTSAN---NEITANQT-QALTN------------INEAKENANNQI 206
+ L+ N KT N E+ NQ Q + N ++ AK+ N +
Sbjct: 332 RYLEKAYLKIPNAGKTPTNPYRQEVNLNQEIQTIQNNVSYYGNRVDAALSVAKDVYN--L 389
Query: 207 TENKTQAITNINEAKN--QSLSK 227
N+T+ +T N AKN Q +SK
Sbjct: 390 KSNQTEIVTTYNNAKNLSQEISK 412
>ref|NP_223017.1| putative [Helicobacter pylori J99]
Length = 321
Score = 25.8 bits (55), Expect = 1.0
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 58 VLLSLDFFKNANEIDSSLRNSIEWLNNAGESLKTKMKEYEGFFSDFN 104
VLL+ +N + L+ I+ LN + E K +YE FFS N
Sbjct: 156 VLLTKTDLQNDSTALMKLKERIQSLNPSAEIFDKKNIDYESFFSRKN 202
>ref|NP_222935.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 483
Score = 25.0 bits (53), Expect = 1.7
Identities = 17/62 (27%), Positives = 30/62 (47%), Gaps = 11/62 (17%)
Query: 63 DFFKNANEIDSSLRNSIEWLNNAGESLKT---------KMKEYEGFFSDFNTSMRTNEQE 113
DF KN N++ S + ++I +L G++L+T K ++ S + S NE +
Sbjct: 233 DFNKNLNQVSSVINDTISYLK--GDNLETIYNTIQKTPNSKGFQSLVSRSSYSYSLNETQ 290
Query: 114 VS 115
S
Sbjct: 291 YS 292
>ref|NP_223963.1| FUMARASE [Helicobacter pylori J99]
Length = 463
Score = 24.6 bits (52), Expect = 2.2
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 20 VKEITNELLKQLQNALNS----NSLFSEQVELSLKGIVRILEVLLSLDFFKNANEIDSSL 75
V EIT++LL L+N L + + F E V++ + + L +F A+ ++ S
Sbjct: 152 VLEITHKLLPSLENLLKTFKEKSQQFKEIVKIGRTHLQDATPLTLGQEFSGYASMLEHSK 211
Query: 76 RNSIEWLNNAGE 87
+ +E L + E
Sbjct: 212 QQILESLEHLRE 223
>ref|NP_223594.1| ALANINE RACEMASE [Helicobacter pylori J99]
Length = 377
Score = 24.6 bits (52), Expect = 2.2
Identities = 24/113 (21%), Positives = 39/113 (34%)
Query: 82 LNNAGESLKTKMKEYEGFFSDFNTSMRTNEQEVSATLNANTENIKSEIKKLENQLIETTT 141
L+NA ++KT K F+ F + + E N+ I S EN+L+
Sbjct: 166 LSNADSNIKTHAKNQMKVFNAFLEQLLDQKIEFQYRHAYNSAGILSLCNGNENRLLNLYR 225
Query: 142 RLLTSYQIFLNNARDSANNQITANKTESLEALNQAKTSANNEITANQTQALTN 194
+ Y + +N ++ I N + Q K E TN
Sbjct: 226 PGIMLYGFYPSNEMKESSQTILKNVISLKARIVQIKRVKKGEFIGYGEHFYTN 278
>ref|NP_222834.1| THREONYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 612
Score = 24.6 bits (52), Expect = 2.2
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 8/52 (15%)
Query: 97 EGFFSDFNTSMRTNEQEVSATLNANTENIKSEIKKLENQLIETTTRLLTSYQ 148
EGF+ DF T+ + +E+++ I++++K+ + T LT Q
Sbjct: 79 EGFYYDFKTTSKISEEDL--------PKIEAKMKEFAKSKLAITKETLTREQ 122
>ref|NP_223238.1| putative [Helicobacter pylori J99]
Length = 110
Score = 24.3 bits (51), Expect = 2.9
Identities = 21/83 (25%), Positives = 40/83 (47%), Gaps = 12/83 (14%)
Query: 43 EQVELSLKGIVRILEVLLSLDFFKNANEIDSSLRNSIEWLNNAGESLKTKM-------KE 95
E+ S+K ++ E+L+ K+ ++ +L N I+ L SLKT++ E
Sbjct: 33 ERTNASMKLTLQEAEILIQ----KHQLQLQRALGN-IDILTQEMSSLKTELKALKQRNSE 87
Query: 96 YEGFFSDFNTSMRTNEQEVSATL 118
Y+G + ++ EQ++ A L
Sbjct: 88 YKGESDKYKNRIKQLEQKIEALL 110
>ref|NP_223971.1| putative [Helicobacter pylori J99]
Length = 376
Score = 23.9 bits (50), Expect = 3.8
Identities = 19/71 (26%), Positives = 30/71 (41%), Gaps = 10/71 (14%)
Query: 99 FFSDFNTS--MRTNEQEVSATLNANTENIKSEIKKLENQLIETTTRLLTSYQIFLNNARD 156
FF F+ + M T + + +A L+ + E + + KL L YQ L+N +D
Sbjct: 9 FFLTFSNAQIMMTFDSQTNAKLSRSNEQLSDMLYKLNESL--------RIYQNVLSNNQD 60
Query: 157 SANNQITANKT 167
AN T
Sbjct: 61 QLKEIKKANST 71
>ref|NP_223656.1| putative [Helicobacter pylori J99]
Length = 337
Score = 23.9 bits (50), Expect = 3.8
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 81 WLNNAGESLKTKMKEYEGFFSDFNTSMRTNEQEVS 115
W N E +K K+K Y+ ++ + N +S
Sbjct: 301 WRNKIWECIKNKVKSYDNTTAEIGIVWKKNTYSIS 335
>ref|NP_223531.1| putative [Helicobacter pylori J99]
Length = 155
Score = 23.9 bits (50), Expect = 3.8
Identities = 10/17 (58%), Positives = 13/17 (75%)
Query: 19 EVKEITNELLKQLQNAL 35
+ KE TNELLK++ N L
Sbjct: 25 QAKERTNELLKEIPNIL 41
>ref|NP_222797.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 673
Score = 23.9 bits (50), Expect = 3.8
Identities = 12/77 (15%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 66 KNANEIDSSLRNSIEWLNNAGESLKTKMKEYEGFFSDFNTSMRTNEQEVSATLNANTENI 125
K+ +EI++++ ++ + + ES+K + K E + N + + + + T+ ++ +
Sbjct: 596 KSLSEIEANINILVQSIADNAESIKMQNKGVENIHNSINALQQ--DVQDNLTIANHSLQV 653
Query: 126 KSEIKKLENQLIETTTR 142
++I + ++E ++
Sbjct: 654 STKIDGISQDILEDVSK 670
>ref|NP_223567.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 527
Score = 23.5 bits (49), Expect = 5.0
Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 7/88 (7%)
Query: 100 FSDFNTSMRTNEQEVSATLNANTENIKSEIKKLENQLIETTTRLLTSYQIFLNNARDSAN 159
F+ N + +E ++ + N ++ + N I +T SY ++ AR +
Sbjct: 264 FNSANAGNDLSAKEFTSLVQNIVNNSQNALTLANNANISNSTGYQVSYGGNIDQARSTQL 323
Query: 160 NQITANKTESLEALNQAKTSANNEITAN 187
T N + AL NNE+ AN
Sbjct: 324 LNNTTNTLAKVTAL-------NNELKAN 344
>ref|NP_223301.1| POLYNUCLEOTIDE ADENYLYLTRANSFERASE [Helicobacter pylori J99]
Length = 402
Score = 23.5 bits (49), Expect = 5.0
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 35 LNSNSLFSEQVELSLKGIVRILE 57
L SN+L +E EL LK R+LE
Sbjct: 43 LTSNALVNESKELLLKHDFRVLE 65
>ref|NP_223209.1| cag island protein [Helicobacter pylori J99]
Length = 268
Score = 23.5 bits (49), Expect = 5.0
Identities = 21/109 (19%), Positives = 48/109 (43%), Gaps = 14/109 (12%)
Query: 27 LLKQLQNALNSNSLFSEQVELSLKGIVRILEVLLSLDFFKNANEIDSSLRNSIEWLNNAG 86
+L+ L+ +N+N SE ++ ++ +FF AN ++ ++N I N+A
Sbjct: 169 ILRLLEKPINNN--ISEDMQSDIE------------NFFVQANFLEYYVQNKIYPTNHAY 214
Query: 87 ESLKTKMKEYEGFFSDFNTSMRTNEQEVSATLNANTENIKSEIKKLENQ 135
+ M + + S+ ++E+ N + + +++ ENQ
Sbjct: 215 DFTHLIMDSIIPNWIQIDMSVEAKKKELFEKYFQNIDEVTNKMLDQENQ 263
>ref|NP_222997.1| putative [Helicobacter pylori J99]
Length = 100
Score = 23.5 bits (49), Expect = 5.0
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 118 LNANTENIKSEIKKLENQLIE-TTTRLLTSYQIFLNNARDSANNQITANKTES--LEALN 174
L++ EN+++EI L+N+L + RL + +I L N I K E L+ L+
Sbjct: 5 LDSLLENLRAEIDALDNELSDLLDKRLGIALKIALIKQESPQENPIYCPKREQEILKRLS 64
Query: 175 Q-AKTSANNEITAN 187
Q N EI A+
Sbjct: 65 QRGFKHLNGEILAS 78
>ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [Helicobacter pylori J99]
Length = 681
Score = 23.5 bits (49), Expect = 5.0
Identities = 18/52 (34%), Positives = 23/52 (43%), Gaps = 14/52 (26%)
Query: 172 ALNQAKTSANNEITANQTQALTNINEAKENANNQITENKTQAITNINEAKNQ 223
A +AKT A E A ++ KEN NN+ E K I EAK +
Sbjct: 14 AKQEAKTEATQENKAKESN--------KENKNNKAKEGK------IKEAKTK 51
>ref|NP_222770.1| Proline/pyrroline-5-carboxylate dehydrogenase [Helicobacter pylori
J99]
Length = 1185
Score = 23.5 bits (49), Expect = 5.0
Identities = 13/45 (28%), Positives = 21/45 (45%)
Query: 151 LNNARDSANNQITANKTESLEALNQAKTSANNEITANQTQALTNI 195
L D+A + AN T +L A K + A++ QA+ N+
Sbjct: 718 LTGGEDTAYKMLKANPTLALSAETGGKNATIVSKMADRDQAIKNV 762
>ref|NP_222743.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 690
Score = 23.5 bits (49), Expect = 5.0
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 9/78 (11%)
Query: 24 TNELLKQLQNALNSNSLFSEQ-VELSLKGIVRILEVLLSLDFFKNANEIDSSLRNSIEWL 82
TN LK N N N+ + E+ K ++L + A+ I ++L ++ W+
Sbjct: 202 TNTELKFTINKNNGNTNTNNNGEEIVTKNNAQVL--------LEQASTIITTLNSACPWI 253
Query: 83 NNAGESLKTKMKEYEGFF 100
NN G + +EG +
Sbjct: 254 NNGGAGGASSGSLWEGIY 271
>ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 969
Score = 23.1 bits (48), Expect = 6.5
Identities = 23/111 (20%), Positives = 49/111 (43%), Gaps = 17/111 (15%)
Query: 65 FKNANEIDSSL-RNSIEWLNNAGESLKTKMKEY-------EGFFSDFNTSMRTNEQEVSA 116
++N ++DS + +++IE N+ + K+ + + DF + N+++V
Sbjct: 849 YENFMQVDSEIEKDTIEESNDTKIIVFGKLPRVKIPIGLNQTYSPDFGYVVENNDKKVLL 908
Query: 117 TLNANTENIKSEIKKLENQLIETTTRLLTS---------YQIFLNNARDSA 158
+ + KSE++ E + I T + + Y+ LNN + SA
Sbjct: 909 VVETKGVDKKSELRPEEKRKISTAKKFFEALKKQGVNIEYKTKLNNDQLSA 959
>ref|NP_223339.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 ALPHA CHAIN [Helicobacter
pylori J99]
Length = 788
Score = 23.1 bits (48), Expect = 6.5
Identities = 12/46 (26%), Positives = 26/46 (56%)
Query: 43 EQVELSLKGIVRILEVLLSLDFFKNANEIDSSLRNSIEWLNNAGES 88
E ++ + +VR+L+ ++ L+F+ N ++L+N L GE+
Sbjct: 511 EDIKRVVPIMVRLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEA 556
>ref|NP_222729.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 668
Score = 23.1 bits (48), Expect = 6.5
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 130 KKLENQLIETTTRLLTSYQIFLNNARDSANNQITANKTESLEALNQAKTSANNEITANQT 189
KKL NQ +T + L F DSA Q+T T N+++T+ T N
Sbjct: 167 KKL-NQAYQTIQQALKQDSGF--PVLDSAGKQVTITITTQTNGANKSETTTTT-TTTNDA 222
Query: 190 QAL 192
Q L
Sbjct: 223 QTL 225
>ref|NP_224013.1| putative ENDONUCLEASE [Helicobacter pylori J99]
Length = 287
Score = 22.7 bits (47), Expect = 8.5
Identities = 14/67 (20%), Positives = 27/67 (39%)
Query: 156 DSANNQITANKTESLEALNQAKTSANNEITANQTQALTNINEAKENANNQITENKTQAIT 215
D +N A + + + LN+ K N+ N N N + ++ +N ++
Sbjct: 21 DMLDNFTKAINSYTAKKLNEIKDQVNSANPTKNHNPTHNANGMLTNIDCKVLKNNFYSVC 80
Query: 216 NINEAKN 222
+E KN
Sbjct: 81 YSSELKN 87
>ref|NP_223377.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 638
Score = 22.7 bits (47), Expect = 8.5
Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 173 LNQAKTSANNEITANQTQALTNINEAKENANNQITENKTQAITNINEAKNQS 224
LN+ + + + + + ++ AK+ N + N+T+ +T N+AKN S
Sbjct: 350 LNKEINAVQDNVANYGNRLDSALSVAKDVYN--LKSNQTEIVTTYNDAKNLS 399
>ref|NP_222962.1| putative [Helicobacter pylori J99]
Length = 222
Score = 22.7 bits (47), Expect = 8.5
Identities = 29/134 (21%), Positives = 56/134 (41%), Gaps = 5/134 (3%)
Query: 87 ESLKTKMKEYEGFFSDFNTSMRTNEQEVSATLNANTENIKSEIKKLENQLIETTTRLLTS 146
ES K ++KE S+ S+R + E + L+ ++ + + K+++ +L + +
Sbjct: 31 ESKKAELKEDLRQLSEKEQSLRILQTENARLLDEKSDLLNKKEKEIDEKLKNLAAK-EEA 89
Query: 147 YQIFLNNARDSANNQITANKTESLEALNQAKTSANNEITA---NQTQALTNINEAKENAN 203
++ + N I N+ L + QAK S E + + AL N +NA
Sbjct: 90 FKTLQTEEKKRLKNLIEENE-GILREIKQAKDSKIGETYSKMKDSKSALILENLPTQNAL 148
Query: 204 NQITENKTQAITNI 217
+ K Q + I
Sbjct: 149 EILMALKPQELGKI 162
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.304 0.120 0.301
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 229,826
Number of Sequences: 1491
Number of extensions: 10571
Number of successful extensions: 84
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 34
Number of HSP's gapped (non-prelim): 58
length of query: 228
length of database: 494,079
effective HSP length: 75
effective length of query: 153
effective length of database: 382,254
effective search space: 58484862
effective search space used: 58484862
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 47 (22.7 bits)