BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645734|ref|NP_207911.1| hypothetical protein
[Helicobacter pylori 26695]
(144 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223765.1| putative [Helicobacter pylori J99] 269 3e-74
ref|NP_223283.1| DNA MISMATCH REPAIR PROTEIN [Helicobacter ... 33 0.003
ref|NP_223770.1| putative [Helicobacter pylori J99] 31 0.012
ref|NP_223276.1| DNA LIGASE [Helicobacter pylori J99] 31 0.015
ref|NP_223112.1| FLAGELLAR MOTOR SWITCH PROTEIN [Helicobact... 27 0.17
ref|NP_223745.1| putative dehydrogenase [Helicobacter pylor... 27 0.22
ref|NP_222827.1| putative [Helicobacter pylori J99] 26 0.38
ref|NP_223530.1| putative [Helicobacter pylori J99] 26 0.50
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 26 0.50
ref|NP_224063.1| putative thiophene/furan oxidation protein... 25 0.85
ref|NP_224130.1| ATP-DEPENDENT DNA HELICASE [Helicobacter p... 25 1.1
ref|NP_223591.1| putative [Helicobacter pylori J99] 25 1.1
ref|NP_222774.1| putative [Helicobacter pylori J99] 25 1.1
ref|NP_222882.1| putative PEPTIDYL-PROLYL CIS-TRANS ISOMERA... 24 1.4
ref|NP_223971.1| putative [Helicobacter pylori J99] 24 1.9
ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT ... 24 1.9
ref|NP_222733.1| putative [Helicobacter pylori J99] 24 1.9
ref|NP_223234.1| putative [Helicobacter pylori J99] 23 2.5
ref|NP_223786.1| METHIONYL-TRNA FORMYLTRANSFERASE [Helicoba... 23 3.2
ref|NP_222993.1| putative [Helicobacter pylori J99] 23 3.2
ref|NP_222984.1| GUANOSINE-5'-TRIPHOSPHATE,3'-DIPHOSPHATE P... 23 3.2
ref|NP_223077.1| response regulator [Helicobacter pylori J99] 23 4.2
ref|NP_223994.1| putative [Helicobacter pylori J99] 22 5.5
ref|NP_223478.1| EXCINUCLEASE ABC SUBUNIT C [Helicobacter p... 22 5.5
ref|NP_223137.1| putative [Helicobacter pylori J99] 22 5.5
ref|NP_223441.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobact... 22 9.3
ref|NP_223195.1| cag island protein [Helicobacter pylori J99] 22 9.3
ref|NP_223132.1| polyphosphate kinase [Helicobacter pylori ... 22 9.3
>ref|NP_223765.1| putative [Helicobacter pylori J99]
Length = 144
Score = 269 bits (687), Expect = 3e-74
Identities = 136/144 (94%), Positives = 138/144 (95%)
Query: 1 MVVLHSHLENALKQLKELIDLTERDIRDIKLAKHTEIFERNHQKQLAIQAFEKEKANIDV 60
MVVLHSHLENAL QLKELIDLTERDIRDIKLAKH EIFERNHQKQLAIQAFE+EK NID
Sbjct: 1 MVVLHSHLENALNQLKELIDLTERDIRDIKLAKHAEIFERNHQKQLAIQAFEQEKTNIDA 60
Query: 61 QMLSLKNQFPDKEMSELLDEKTSDFLNQMRESLFVLKEKNLIYSRMAFAVSEFYSSLIQQ 120
QMLSLKNQFP+KEMSELLDEKTSDFLNQMRE L VLKEKNLIYSRMAFAVSEFYSSLIQQ
Sbjct: 61 QMLSLKNQFPNKEMSELLDEKTSDFLNQMREFLLVLKEKNLIYSRMAFAVSEFYSSLIQQ 120
Query: 121 IIPHDTCDYKGSRHVGSHFLRVQA 144
IIPHDTCDYKGSRHVGSHFLRVQA
Sbjct: 121 IIPHDTCDYKGSRHVGSHFLRVQA 144
>ref|NP_223283.1| DNA MISMATCH REPAIR PROTEIN [Helicobacter pylori J99]
Length = 762
Score = 33.1 bits (74), Expect = 0.003
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 16/86 (18%)
Query: 5 HSHLENALKQLKELIDLTERDIRDIKLAKHTEIFERNHQKQLAIQAFEKEKANIDVQMLS 64
+ HLENALK+ ++L ++ +++ K EIF H K+L ++ ++ NI
Sbjct: 534 NEHLENALKEQEDL-----KNAWLLEMEKQKEIF---HHKKLELEKSYQQALNI------ 579
Query: 65 LKNQFPDKEMSELLDE--KTSDFLNQ 88
LK++ K+ S + E K S+ LN+
Sbjct: 580 LKSEVASKDTSSMHKEIHKASEILNK 605
>ref|NP_223770.1| putative [Helicobacter pylori J99]
Length = 331
Score = 31.2 bits (69), Expect = 0.012
Identities = 26/91 (28%), Positives = 41/91 (44%), Gaps = 5/91 (5%)
Query: 10 NALKQLKELIDLTERDIRDIKLAKHTEIFERNHQKQLAIQAFEKEKANID-VQMLSLKNQ 68
N +K L I E +R +K ++ + Q Q + AN +Q L +N
Sbjct: 73 NKIKDLNNAILSQEESLRALKASQEVQANTLKQQSQTLEDLRNEIHANQQAIQQLDKQN- 131
Query: 69 FPDKEMSELLDEKTSDFLNQMRESLFVLKEK 99
KEMSELL + + D ++Q+ LKE+
Sbjct: 132 ---KEMSELLTKLSQDLVSQIALIQKALKEQ 159
>ref|NP_223276.1| DNA LIGASE [Helicobacter pylori J99]
Length = 656
Score = 30.8 bits (68), Expect = 0.015
Identities = 20/92 (21%), Positives = 47/92 (50%), Gaps = 2/92 (2%)
Query: 31 LAKH-TEIFERNHQKQLAIQAFEKEKANIDVQMLSLKNQFPDKEMSELLDEKTSDFLNQM 89
LAK+ + E++ + L ++ F E A+ V + +F + + ELL+ K+SD +
Sbjct: 517 LAKYGLNVLEKSEAEFLEMEGFGVEMAHSLVNFYASNQEFI-RSLFELLNPKSSDTAEEK 575
Query: 90 RESLFVLKEKNLIYSRMAFAVSEFYSSLIQQI 121
++S V +K ++ + + Y+ +++ +
Sbjct: 576 QKSSSVFSDKTIVLTGTLSKPRQEYAQMLENL 607
>ref|NP_223112.1| FLAGELLAR MOTOR SWITCH PROTEIN [Helicobacter pylori J99]
Length = 354
Score = 27.3 bits (59), Expect = 0.17
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 15 LKELIDLTERDIRDIKLAKHTEIFERNHQKQ--LAIQAFEKEKANIDVQMLSLKNQFPDK 72
LKE++DL D + + E+ H+K+ LA F+ + I ++ + + K
Sbjct: 272 LKEMLDLDVGDTIRLNKVANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVVYSEKERTK 331
Query: 73 EMSELLDEK 81
E+ E+L+E+
Sbjct: 332 EILEMLEEQ 340
>ref|NP_223745.1| putative dehydrogenase [Helicobacter pylori J99]
Length = 227
Score = 26.9 bits (58), Expect = 0.22
Identities = 10/31 (32%), Positives = 21/31 (67%)
Query: 81 KTSDFLNQMRESLFVLKEKNLIYSRMAFAVS 111
+TS FLN+ +E++ + K N Y R++ +++
Sbjct: 144 ETSAFLNEEKENIVLTKPTNAPYERLSMSIN 174
>ref|NP_222827.1| putative [Helicobacter pylori J99]
Length = 627
Score = 26.2 bits (56), Expect = 0.38
Identities = 18/85 (21%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 7 HLENALKQLKELIDL-----TERDIRDIKLAKHTEIFERNHQKQLAIQAFEKEKANIDVQ 61
+L+ A K+ +E+I T+ + +K+A+ E E+ H+K + +E N+ +
Sbjct: 486 NLKIAKKKCEEIIKYANEKKTQVEEAFLKVAEFLEKVEKLHEKNKLEELDFEELENLSAE 545
Query: 62 MLSLKNQFPDKEMSELLDEKTSDFL 86
+ ++K F DK + + ++
Sbjct: 546 IDNVKELFDDKRFNSYFMDAIQSYI 570
>ref|NP_223530.1| putative [Helicobacter pylori J99]
Length = 243
Score = 25.8 bits (55), Expect = 0.50
Identities = 19/86 (22%), Positives = 40/86 (46%)
Query: 13 KQLKELIDLTERDIRDIKLAKHTEIFERNHQKQLAIQAFEKEKANIDVQMLSLKNQFPDK 72
KQ+ L+ L + I K+A IF ++ A++ E +D+ LS + +
Sbjct: 148 KQVDMLMGLDIQRIAFKKIADRILIFSKDTDLIPALKLARDEGLRVDIADLSNRLSLLSQ 207
Query: 73 EMSELLDEKTSDFLNQMRESLFVLKE 98
++ D+ N++++ LF ++E
Sbjct: 208 DLKYNSDKVRKLSSNEVKDKLFSIRE 233
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 25.8 bits (55), Expect = 0.50
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 11 ALKQLKELIDLTERDIRDIKLAKHTEIFERNHQKQLAIQAFEKEKANIDVQMLSLKNQFP 70
A + +K +D R R+ K K E ++L ++ + KA +D + KN+
Sbjct: 1122 AKESVKAYLDCVSR-ARNEKEKKECEKLLTPEARKLLEESKKSVKAYLDC-VSKAKNEAE 1179
Query: 71 DKEMSELLDEKTSDFLNQMRESLFVLKE 98
KE +LL + L + +ES+ K+
Sbjct: 1180 KKECEKLLTPEARKLLEEAKESVKAYKD 1207
Score = 25.8 bits (55), Expect = 0.50
Identities = 24/91 (26%), Positives = 41/91 (44%), Gaps = 2/91 (2%)
Query: 8 LENALKQLKELIDLTERDIRDIKLAKHTEIFERNHQKQLAIQAFEKEKANIDVQMLSLKN 67
LE A K +K D R R+ K + E ++L ++ + KA +D + KN
Sbjct: 752 LEEAKKSVKAYKDCVLR-ARNEKEKQECEKLLTPEARKLLEESKKSVKAYLDC-VSKAKN 809
Query: 68 QFPDKEMSELLDEKTSDFLNQMRESLFVLKE 98
+ KE +LL + L + +ES+ K+
Sbjct: 810 EAERKECEKLLTPEARKLLEEAKESVKAYKD 840
Score = 25.4 bits (54), Expect = 0.65
Identities = 23/91 (25%), Positives = 41/91 (44%), Gaps = 2/91 (2%)
Query: 8 LENALKQLKELIDLTERDIRDIKLAKHTEIFERNHQKQLAIQAFEKEKANIDVQMLSLKN 67
LE A + +K D R R+ K + E ++L ++ + KA +D + KN
Sbjct: 828 LEEAKESVKAYKDCVSR-ARNEKEKQECEKLLTPEARKLLEESKKSVKAYLDC-VSKAKN 885
Query: 68 QFPDKEMSELLDEKTSDFLNQMRESLFVLKE 98
+ KE +LL + L + +ES+ K+
Sbjct: 886 EAERKECEKLLTPEARKLLEEAKESVKAYKD 916
Score = 23.9 bits (50), Expect = 1.9
Identities = 15/56 (26%), Positives = 26/56 (45%), Gaps = 1/56 (1%)
Query: 44 KQLAIQAFEKEKANIDVQMLS-LKNQFPDKEMSELLDEKTSDFLNQMRESLFVLKE 98
K L + KE + + +S KN+ KE +LL + L + +ES+ K+
Sbjct: 968 KDLQKKVLAKESVRVYLDCVSKAKNEAERKECEKLLTPEARKLLEEAKESVKAYKD 1023
>ref|NP_224063.1| putative thiophene/furan oxidation protein [Helicobacter pylori
J99]
Length = 461
Score = 25.0 bits (53), Expect = 0.85
Identities = 25/116 (21%), Positives = 50/116 (42%), Gaps = 6/116 (5%)
Query: 15 LKELIDLTERDIRDIKLAKHTEIFERNHQKQLAIQAFEKEKANIDVQMLSLKNQFPDKEM 74
++E+I+L +R I A E + ++L I+ K N D+ + F +
Sbjct: 263 IEEVIELKGHKVRLIDTAGIRE--SADEIERLGIEKSLKSLENCDI----ILGVFDLSKP 316
Query: 75 SELLDEKTSDFLNQMRESLFVLKEKNLIYSRMAFAVSEFYSSLIQQIIPHDTCDYK 130
E D D LN+ ++ V+ KN + ++ + + Y + I+ +T + K
Sbjct: 317 LEKEDFNLMDTLNRTKKPCIVVLNKNDLAPKLELEILKSYLKIPYSILETNTLNSK 372
>ref|NP_224130.1| ATP-DEPENDENT DNA HELICASE [Helicobacter pylori J99]
Length = 623
Score = 24.6 bits (52), Expect = 1.1
Identities = 22/82 (26%), Positives = 37/82 (44%), Gaps = 4/82 (4%)
Query: 30 KLAKHTEIFERNHQKQLAIQAFEKEKANIDVQMLSLKNQFPDKEMSELLDEK---TSDFL 86
K+ H +I E N QK L+++ +KE +V L L+ FP + + S L
Sbjct: 128 KVKNHKKIQE-NLQKLLSLENLKKEGVKENVARLLLEIFFPTPHFVKDFETNKNFPSQHL 186
Query: 87 NQMRESLFVLKEKNLIYSRMAF 108
N ++ + KNL ++ F
Sbjct: 187 NALKYIEMLFYMKNLERKKLQF 208
>ref|NP_223591.1| putative [Helicobacter pylori J99]
Length = 291
Score = 24.6 bits (52), Expect = 1.1
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
Query: 42 HQKQLAIQAFEKEKANID--------VQMLSLKNQFPDKEMSELLDEKTSDFLNQMRESL 93
H KQL + FE+ + N++ V +K + D MS L +SD +M E +
Sbjct: 221 HTKQL-VSFFEETEKNLNKVLNIFIRVNSGGVKLSYSDLLMSILTASFSSDIREKMNELV 279
Query: 94 FVLKEK 99
LK+K
Sbjct: 280 DALKDK 285
>ref|NP_222774.1| putative [Helicobacter pylori J99]
Length = 327
Score = 24.6 bits (52), Expect = 1.1
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 43 QKQLAIQAFEKEKANIDVQMLSLKNQFPDKEMSELLDEKTSDFLNQMRESLFVLKEKNLI 102
+++L + E E N + L + ++ E SEL D +D L Q + LF+ K+K
Sbjct: 15 REELEARISELEDENTE---LLREREYLAAETSELKD--ANDQLRQKNDKLFITKDKLTK 69
Query: 103 YSRMAFAVSEFYS 115
+ FA +E S
Sbjct: 70 ENTELFAENESLS 82
>ref|NP_222882.1| putative PEPTIDYL-PROLYL CIS-TRANS ISOMERASE [Helicobacter pylori
J99]
Length = 299
Score = 24.3 bits (51), Expect = 1.4
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 13/56 (23%)
Query: 43 QKQLAIQAFEKEKANIDVQMLSLKNQFPDKEMSELLDEKTSDFLNQMRESLFVLKE 98
+KQ ++ + K++A +V+ K Q P+KEM DF N ++ LFV +E
Sbjct: 114 KKQALVEFWAKKQAE-EVK----KIQIPEKEMQ--------DFYNANKDQLFVKQE 156
>ref|NP_223971.1| putative [Helicobacter pylori J99]
Length = 376
Score = 23.9 bits (50), Expect = 1.9
Identities = 17/81 (20%), Positives = 38/81 (45%), Gaps = 1/81 (1%)
Query: 49 QAFEKEKANIDVQMLSLKNQFPDKEMSELLDEKTSDF-LNQMRESLFVLKEKNLIYSRMA 107
++ E E+ + Q L L+ P + L+E ++ + + +LF+LKE L +
Sbjct: 112 ESMEHERLIKESQALFLQEHCPYLSGVKNLEEASNALEVQEKNNALFLLKEPKLFHLLSR 171
Query: 108 FAVSEFYSSLIQQIIPHDTCD 128
+ ++L Q++ ++ D
Sbjct: 172 LDLMSALNALCDQVLENEIQD 192
>ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT [Helicobacter pylori J99]
Length = 2890
Score = 23.9 bits (50), Expect = 1.9
Identities = 7/22 (31%), Positives = 16/22 (71%)
Query: 72 KEMSELLDEKTSDFLNQMRESL 93
K+++ +L++KT DF ++R +
Sbjct: 1154 KQIASMLEDKTKDFAKELRAKM 1175
>ref|NP_222733.1| putative [Helicobacter pylori J99]
Length = 350
Score = 23.9 bits (50), Expect = 1.9
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 8 LENALKQLKELIDLTERDIRDIKLAKHTEIFERNHQKQLAIQAFEKEKANIDVQ 61
+ N +K LKE ++ D + K+ F H +L + E+E +D++
Sbjct: 228 VSNKIKNLKEYREMV---FEDGVIVKNGRYFVLPHNARLVVARNEEENHKLDIE 278
>ref|NP_223234.1| putative [Helicobacter pylori J99]
Length = 366
Score = 23.5 bits (49), Expect = 2.5
Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 28 DIKLAKHTEIFERNHQKQLAIQAFEKEKANIDVQMLSLKNQFPDKEMSELLDEKTSDFLN 87
++ LA + +R + Q A+++ K+ N+ LSLK + + ++ TS+
Sbjct: 132 ELILADIATLDKRIDRLQKALKS-SKDAKNLLECALSLKTHLEELKPAKTFPLNTSEAFL 190
Query: 88 QMRESLFVLKEKNLIY 103
++ + L L K +IY
Sbjct: 191 ELDKELRFLSHKKMIY 206
>ref|NP_223786.1| METHIONYL-TRNA FORMYLTRANSFERASE [Helicobacter pylori J99]
Length = 305
Score = 23.1 bits (48), Expect = 3.2
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 26 IRDIKLAKHTEIFERNHQKQLAIQAFEKEKANIDVQMLSL 65
++ + EIF N K L ++ E EK++ + ++L++
Sbjct: 221 LKSLAFKSWPEIFLENSLKLLEVELVENEKSHKEGEILAI 260
>ref|NP_222993.1| putative [Helicobacter pylori J99]
Length = 172
Score = 23.1 bits (48), Expect = 3.2
Identities = 16/52 (30%), Positives = 24/52 (45%), Gaps = 1/52 (1%)
Query: 33 KHTEIFERNHQKQLAIQAFEKEKANIDVQMLSLKNQFPDKEMSELLDEKTSD 84
K ++F Q + F KE +D Q+ K + +E+ LLD K SD
Sbjct: 70 KRLQLFLFQKDPQSYMDNFYKE-VGLDAQLERFKKEGSLEELEFLLDYKYSD 120
>ref|NP_222984.1| GUANOSINE-5'-TRIPHOSPHATE,3'-DIPHOSPHATE PYROPHOSPHATASE
[Helicobacter pylori J99]
Length = 484
Score = 23.1 bits (48), Expect = 3.2
Identities = 15/57 (26%), Positives = 28/57 (48%)
Query: 51 FEKEKANIDVQMLSLKNQFPDKEMSELLDEKTSDFLNQMRESLFVLKEKNLIYSRMA 107
+ K NI+ ++SLK++F E +K L ++ L + EK L + ++A
Sbjct: 300 YHKFPPNINPSLISLKDRFLPHEKHSQKVKKECVKLFEVLSPLHKIDEKYLFHLKIA 356
>ref|NP_223077.1| response regulator [Helicobacter pylori J99]
Length = 124
Score = 22.7 bits (47), Expect = 4.2
Identities = 14/58 (24%), Positives = 29/58 (49%), Gaps = 6/58 (10%)
Query: 34 HTEIFERNHQKQLAIQAFEKEKANIDVQMLSLKNQFPDKEMSELLDEKTSDFLNQMRE 91
+ ++ E H ++A+EK AN D ++L P+ +L+ + +D N+ +E
Sbjct: 25 YEDVLEAEH----GVEAWEKLDANADTKVLITDWNMPEMNGLDLVKKVRAD--NRFKE 76
>ref|NP_223994.1| putative [Helicobacter pylori J99]
Length = 168
Score = 22.3 bits (46), Expect = 5.5
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 14/76 (18%)
Query: 6 SHLENAL--KQLKELIDLTERDIRDIKLAKH--------TEIFERNHQKQLAIQAFEKEK 55
S+ EN L K+L+EL E + + L K T + +Q Q ++ +KE+
Sbjct: 47 SYQENYLYSKRLREL----EGRLEGLSLEKSAKEDSSLKTTLSHLYNQLQEIQKSMDKER 102
Query: 56 ANIDVQMLSLKNQFPD 71
++ ++++L+N+F D
Sbjct: 103 DYLEEKIITLENKFKD 118
>ref|NP_223478.1| EXCINUCLEASE ABC SUBUNIT C [Helicobacter pylori J99]
Length = 594
Score = 22.3 bits (46), Expect = 5.5
Identities = 18/70 (25%), Positives = 29/70 (40%), Gaps = 13/70 (18%)
Query: 36 EIFERNHQKQLAI---------QAFEKEKANIDVQMLSLKNQFPDKEMSELLDEKTSDFL 86
EIF+ +H AF+K+ + LK +MSELL + DF
Sbjct: 396 EIFDTSHHSNSQCVGGMVVYENNAFQKDS----YRRYHLKGSNEYDQMSELLTRRALDFA 451
Query: 87 NQMRESLFVL 96
+ +L+V+
Sbjct: 452 KEPPPNLWVI 461
>ref|NP_223137.1| putative [Helicobacter pylori J99]
Length = 115
Score = 22.3 bits (46), Expect = 5.5
Identities = 9/51 (17%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 30 KLAKHTEIFERNHQKQLAIQAFEKEKANIDVQMLSLKNQFPDKEMSELLDE 80
K ++ E ++NH++++ +Q +KE+ +++ K + ++ +L ++
Sbjct: 63 KREEYIERLKKNHERKMILQDKQKEE---QMRLYQAKKERESRQKQDLKEQ 110
>ref|NP_223441.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobacter pylori J99]
Length = 865
Score = 21.6 bits (44), Expect = 9.3
Identities = 7/21 (33%), Positives = 16/21 (75%)
Query: 8 LENALKQLKELIDLTERDIRD 28
L+NA ++LK+ + E+D+++
Sbjct: 43 LQNAFEELKKRVRSVEKDLQE 63
>ref|NP_223195.1| cag island protein [Helicobacter pylori J99]
Length = 522
Score = 21.6 bits (44), Expect = 9.3
Identities = 19/80 (23%), Positives = 41/80 (50%), Gaps = 7/80 (8%)
Query: 13 KQLKELIDLTERDIRDIKLAKHTEIFERNHQKQLAIQAFEKEKANIDV---QMLSLKNQF 69
K+L+E E++ + A+ + +R +K+ K +AN++ M + +N
Sbjct: 139 KELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERA----KNRANLENLTNAMSNPQNLS 194
Query: 70 PDKEMSELLDEKTSDFLNQM 89
+K +SEL+ ++ + L+QM
Sbjct: 195 NNKNLSELIKQQRENELDQM 214
>ref|NP_223132.1| polyphosphate kinase [Helicobacter pylori J99]
Length = 675
Score = 21.6 bits (44), Expect = 9.3
Identities = 11/65 (16%), Positives = 27/65 (40%)
Query: 77 LLDEKTSDFLNQMRESLFVLKEKNLIYSRMAFAVSEFYSSLIQQIIPHDTCDYKGSRHVG 136
+ +++ D+ + M +SL + ++ + E +L+ + T YK + G
Sbjct: 225 ITEDEAHDYADLMSKSLRKRNQGEIVRLQTQKGSQELLKTLLASLRSFQTHSYKKHKLTG 284
Query: 137 SHFLR 141
H +
Sbjct: 285 MHIYK 289
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.320 0.134 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 143,962
Number of Sequences: 1491
Number of extensions: 6161
Number of successful extensions: 39
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 31
length of query: 144
length of database: 494,079
effective HSP length: 70
effective length of query: 74
effective length of database: 389,709
effective search space: 28838466
effective search space used: 28838466
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 44 (21.6 bits)