BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645736|ref|NP_207913.1| hypothetical protein
[Helicobacter pylori 26695]
(76 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223768.1| putative [Helicobacter pylori J99] 126 9e-32
ref|NP_223684.1| METHIONYL-TRNA SYNTHETASE [Helicobacter py... 30 0.009
ref|NP_223380.1| putative Outer membrane protein [Helicobac... 25 0.38
ref|NP_222846.1| putative [Helicobacter pylori J99] 25 0.38
ref|NP_223731.1| putative [Helicobacter pylori J99] 24 0.50
ref|NP_224094.1| UBIQUINONE/MENAQUINONE BIOSYNTHESIS METHLY... 23 1.1
ref|NP_223377.1| putative Outer membrane protein [Helicobac... 23 1.5
ref|NP_224091.1| SERYL-TRNA SYNTHETASE [Helicobacter pylori... 22 1.9
ref|NP_223894.1| PROTEIN-EXPORT MEMBRANE PROTEIN [Helicobac... 22 1.9
ref|NP_223373.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU ... 22 1.9
ref|NP_223972.1| putative TRNA (5-METHYLAMINOMETHYL-2-THIOU... 22 2.5
ref|NP_223788.1| putative [Helicobacter pylori J99] 22 2.5
ref|NP_223686.1| putative [Helicobacter pylori J99] 22 2.5
ref|NP_222990.1| putative [Helicobacter pylori J99] 22 2.5
ref|NP_222950.1| putative histidine kinase sensor protein [... 22 3.2
ref|NP_224012.1| PREPHENATE DEHYDROGENASE [Helicobacter pyl... 21 4.2
ref|NP_222827.1| putative [Helicobacter pylori J99] 21 4.2
ref|NP_223787.1| putative [Helicobacter pylori J99] 21 5.5
ref|NP_223486.1| INOSINE-5'-MONOPHOSPHATE DEHYDROGENASE [He... 21 5.5
ref|NP_223317.1| putative [Helicobacter pylori J99] 21 5.5
ref|NP_222876.1| putative PROTEASE [Helicobacter pylori J99] 21 5.5
ref|NP_223387.1| putative [Helicobacter pylori J99] 20 7.2
ref|NP_223274.1| putative vacuolating cytotoxin (VacA) para... 20 7.2
ref|NP_224129.1| TYPE III DNA MODIFICATION ENZYME (METHYLTR... 20 9.4
ref|NP_223530.1| putative [Helicobacter pylori J99] 20 9.4
ref|NP_222891.1| LYSYL-TRNA SYNTHETASE [Helicobacter pylori... 20 9.4
ref|NP_222780.1| putative [Helicobacter pylori J99] 20 9.4
ref|NP_222774.1| putative [Helicobacter pylori J99] 20 9.4
>ref|NP_223768.1| putative [Helicobacter pylori J99]
Length = 67
Score = 126 bits (316), Expect = 9e-32
Identities = 63/67 (94%), Positives = 66/67 (98%)
Query: 10 MINAVSSLAPVQSLGNYKRVEKNEKVENNEAALDRVAEIKKAIENNQYKINLHETSHKMA 69
MINAVSSL PVQS+GNYKRVEKNEKVENNEAALDRVAEIK+AIENNQYKINLHETSHKMA
Sbjct: 1 MINAVSSLTPVQSVGNYKRVEKNEKVENNEAALDRVAEIKQAIENNQYKINLHETSHKMA 60
Query: 70 KDLLGIS 76
+DLLGIS
Sbjct: 61 QDLLGIS 67
>ref|NP_223684.1| METHIONYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 656
Score = 30.0 bits (66), Expect = 0.009
Identities = 14/47 (29%), Positives = 26/47 (54%)
Query: 4 KLKDFTMINAVSSLAPVQSLGNYKRVEKNEKVENNEAALDRVAEIKK 50
KL+D + + + ++ + +++EK EK+E E AL AE K+
Sbjct: 493 KLQDMVLQDTEPLFSKIEKIEKIEKIEKIEKIEKGEEALAEKAEKKE 539
Score = 20.4 bits (41), Expect = 7.2
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 25 NYKRVEKNEKVENNEAALDRVAEIKKAIENNQYKINLHE 63
NY +E +KVE + I+K+ + + K++L E
Sbjct: 549 NYISIEDFKKVEIKVGLIKEAQRIEKSNKLLRLKVDLGE 587
>ref|NP_223380.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 651
Score = 24.6 bits (52), Expect = 0.38
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 20 VQSLGNYKRVEKNEKVENNEAALDRVAEIKKAIEN 54
V++ G K + NEK E L++VA +K++I+N
Sbjct: 40 VKNTGELKNL--NEKYEQLSQYLNQVASLKQSIQN 72
>ref|NP_222846.1| putative [Helicobacter pylori J99]
Length = 211
Score = 24.6 bits (52), Expect = 0.38
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 26 YKRVEKNEKVENNEAALDRVAE-IKKAIENNQYKINLHET 64
YK + K E E+A + + + I KA+EN Q K LH T
Sbjct: 41 YKHFQVLNKAELIESAKENLEQAILKALENFQSKKVLHST 80
>ref|NP_223731.1| putative [Helicobacter pylori J99]
Length = 201
Score = 24.3 bits (51), Expect = 0.50
Identities = 15/62 (24%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 21 QSLGNYKRVEKNEKVENNEAALDRVAEIKKAIENN------QYKINLHETSHKMAKDLLG 74
Q + + R E+N++++N +++ K+A ++N + ++ + K AK+L+G
Sbjct: 20 QRVSPHARKEENKEIQNLSENDEKIKLAKQAKQDNLAIGDLESRLKSLKGMDKDAKELVG 79
Query: 75 IS 76
IS
Sbjct: 80 IS 81
>ref|NP_224094.1| UBIQUINONE/MENAQUINONE BIOSYNTHESIS METHLYTRANSFERASE [Helicobacter
pylori J99]
Length = 246
Score = 23.1 bits (48), Expect = 1.1
Identities = 10/31 (32%), Positives = 18/31 (57%)
Query: 29 VEKNEKVENNEAALDRVAEIKKAIENNQYKI 59
++K E++EN + + A+ K +ENN I
Sbjct: 100 IKKCEELENKASFIQAQAKDLKGVENNSVDI 130
>ref|NP_223377.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 638
Score = 22.7 bits (47), Expect = 1.5
Identities = 14/43 (32%), Positives = 25/43 (57%), Gaps = 4/43 (9%)
Query: 20 VQSLGNYKRVEKNEKVENNEAALDRVAEIKKAIE--NNQYKIN 60
V++ G K + N+K E +L ++A +KK+I+ NN +N
Sbjct: 40 VKNTGELKNL--NDKYEQLSQSLAQLASLKKSIQTANNIQAVN 80
>ref|NP_224091.1| SERYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 415
Score = 22.3 bits (46), Expect = 1.9
Identities = 7/15 (46%), Positives = 13/15 (86%)
Query: 46 AEIKKAIENNQYKIN 60
+++KK +ENN+ K+N
Sbjct: 71 SDLKKELENNKIKLN 85
>ref|NP_223894.1| PROTEIN-EXPORT MEMBRANE PROTEIN [Helicobacter pylori J99]
Length = 198
Score = 22.3 bits (46), Expect = 1.9
Identities = 12/41 (29%), Positives = 21/41 (50%), Gaps = 4/41 (9%)
Query: 30 EKNEKVENNEAALDRVAEIKKAIENNQYKINLHETSHKMAK 70
++NEK E N+A + + K +E N+ T+H+ K
Sbjct: 146 KQNEKNEKNDAKENGI----KGVEKNKENAKTPPTTHQKPK 182
Score = 20.8 bits (42), Expect = 5.5
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 20 VQSLGNYKRVEKNEKVENNEAALDRVAEIKKAIENNQYKINLHETSH 66
V+S ++ EKN+ EN +++ E K K H T++
Sbjct: 142 VESPKQNEKNEKNDAKENGIKGVEKNKENAKTPPTTHQKPKTHATTN 188
>ref|NP_223373.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU [Helicobacter pylori J99]
Length = 582
Score = 22.3 bits (46), Expect = 1.9
Identities = 11/32 (34%), Positives = 17/32 (52%)
Query: 8 FTMINAVSSLAPVQSLGNYKRVEKNEKVENNE 39
F ++S AP Q + +R+E EK+E E
Sbjct: 352 FNQSPSISYNAPKQEPKSTERIEGREKLEKRE 383
>ref|NP_223972.1| putative TRNA
(5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE
[Helicobacter pylori J99]
Length = 360
Score = 21.9 bits (45), Expect = 2.5
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 24 GNYKRVEKNEKVENNEAALDRVAE 47
G+Y RV++ +KV + ALD+ +
Sbjct: 134 GHYARVKEIDKVSYIQEALDKTKD 157
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 21.9 bits (45), Expect = 2.5
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 31 KNEKVENNEAALDRVAEIKKAI-ENNQYKINLHETSHKMAKDLL 73
+NEK N + L+R +I+KA+ E N+ K E +M ++ L
Sbjct: 155 ENEKKLNEKLELER-EKIEKALHEKNELKFKQQEEQLEMLRNEL 197
>ref|NP_223686.1| putative [Helicobacter pylori J99]
Length = 623
Score = 21.9 bits (45), Expect = 2.5
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 21 QSLGNYKRVEKNEKVENNEAALDRVAEIKKAIENNQYKI 59
++LGN K E + + E L+ E+ + I+N+ ++
Sbjct: 170 KNLGNVKMHELEQMFSDYELRLNTYTEVLRYIKNHPKEV 208
>ref|NP_222990.1| putative [Helicobacter pylori J99]
Length = 523
Score = 21.9 bits (45), Expect = 2.5
Identities = 18/74 (24%), Positives = 35/74 (46%), Gaps = 5/74 (6%)
Query: 2 NIKLKDFTMINAVSSLAPVQSLGNYKRVEKNEKVENNEAALDRVAEIKKAIENNQYKINL 61
+++LK + N +SL V L +++ ++ N ALD+ A++ I Q K
Sbjct: 137 SMRLKHENLKNNQTSLGEVLKL-----LDQKHQLLNQWHALDKSAKLSDEIYQTQAKRLE 191
Query: 62 HETSHKMAKDLLGI 75
+ + + K +GI
Sbjct: 192 LQGAQNILKTTIGI 205
>ref|NP_222950.1| putative histidine kinase sensor protein [Helicobacter pylori
J99]
Length = 381
Score = 21.6 bits (44), Expect = 3.2
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 43 DRVAEIKKAIENNQYKINLHETSHKMAKDLL 73
D+ + K +EN I+L K ++DLL
Sbjct: 21 DKASSFKGLLENENNVISLENFKPKESEDLL 51
>ref|NP_224012.1| PREPHENATE DEHYDROGENASE [Helicobacter pylori J99]
Length = 275
Score = 21.2 bits (43), Expect = 4.2
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 8 FTMINAVSSLAPVQSLGNYKRVEKNEKVENNEAALDRVAEIKKAIENNQYK 58
F ++ +S +P+ +K+ ++ +E E +A+ K IENN Y+
Sbjct: 210 FRDMSRLSKSSPLMWKDIFKQ-NRDNVLEAIEKCEKEIAQAKAWIENNDYE 259
>ref|NP_222827.1| putative [Helicobacter pylori J99]
Length = 627
Score = 21.2 bits (43), Expect = 4.2
Identities = 13/41 (31%), Positives = 19/41 (45%)
Query: 32 NEKVENNEAALDRVAEIKKAIENNQYKINLHETSHKMAKDL 72
NEK E A +VAE + +E K L E + ++L
Sbjct: 502 NEKKTQVEEAFLKVAEFLEKVEKLHEKNKLEELDFEELENL 542
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 20.8 bits (42), Expect = 5.5
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 31 KNEKVENNEAALDRVAEIKKAIENN 55
K + + AL+R+ EI K +NN
Sbjct: 318 KEDYTNKTDEALERLDEIIKTEQNN 342
Score = 20.4 bits (41), Expect = 7.2
Identities = 7/32 (21%), Positives = 18/32 (55%)
Query: 32 NEKVENNEAALDRVAEIKKAIENNQYKINLHE 63
NE++ N+ + + + KK+ + +K ++E
Sbjct: 401 NEQITNHNETIKDIEKQKKSCKEQTWKFLINE 432
>ref|NP_223486.1| INOSINE-5'-MONOPHOSPHATE DEHYDROGENASE [Helicobacter pylori J99]
Length = 481
Score = 20.8 bits (42), Expect = 5.5
Identities = 10/42 (23%), Positives = 19/42 (44%)
Query: 23 LGNYKRVEKNEKVENNEAALDRVAEIKKAIENNQYKINLHET 64
LG V KN ++ + +V + + + N+ I+ H T
Sbjct: 63 LGGIGIVHKNMDIQTQVKEITKVKKSESGVINDPIFIHAHRT 104
>ref|NP_223317.1| putative [Helicobacter pylori J99]
Length = 360
Score = 20.8 bits (42), Expect = 5.5
Identities = 14/72 (19%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 4 KLKDFTMI--NAVSSLAPVQSLGNYKRVEK-NEKVENNEAALDRVAEIKKAIENNQYKIN 60
K+ + TM+ + + + + + K+++ KVEN E + + ENN K+
Sbjct: 203 KMSNATMLFGHIENKIHRIDHMLRIKKIQSPKNKVENKEGGFNAFIPLLYQKENNYLKVG 262
Query: 61 LHETSHKMAKDL 72
++ ++ K +
Sbjct: 263 KSPSAIEILKTI 274
>ref|NP_222876.1| putative PROTEASE [Helicobacter pylori J99]
Length = 422
Score = 20.8 bits (42), Expect = 5.5
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 39 EAALDRVAEIKKAIENNQYKINLH 62
E +L+ EIKKA+ + + +I +H
Sbjct: 144 ELSLNDAVEIKKALPDLELEIFVH 167
>ref|NP_223387.1| putative [Helicobacter pylori J99]
Length = 371
Score = 20.4 bits (41), Expect = 7.2
Identities = 7/27 (25%), Positives = 16/27 (58%)
Query: 46 AEIKKAIENNQYKINLHETSHKMAKDL 72
++ KK+ + + NLH+ K+ +D+
Sbjct: 282 SDYKKSQQRKEVDKNLHQICEKIVQDV 308
>ref|NP_223274.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 3194
Score = 20.4 bits (41), Expect = 7.2
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 54 NNQYKINLHETSHKMAKDLL 73
NNQ+KIN +T +K ++
Sbjct: 779 NNQFKINGAQTDFTFSKGVV 798
>ref|NP_224129.1| TYPE III DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 641
Score = 20.0 bits (40), Expect = 9.4
Identities = 7/15 (46%), Positives = 12/15 (79%)
Query: 29 VEKNEKVENNEAALD 43
V+ +EK+E N++A D
Sbjct: 461 VQLDEKIEKNKSAYD 475
>ref|NP_223530.1| putative [Helicobacter pylori J99]
Length = 243
Score = 20.0 bits (40), Expect = 9.4
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 25 NYKRVEKNEKVENNEAALDRVAEIKKAIENNQY 57
N++R K K N ALD + I+ + ++++
Sbjct: 13 NFRRDIKQTKCVNYNIALDVIVTIRAFLLDDEW 45
>ref|NP_222891.1| LYSYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 501
Score = 20.0 bits (40), Expect = 9.4
Identities = 10/28 (35%), Positives = 16/28 (56%)
Query: 30 EKNEKVENNEAALDRVAEIKKAIENNQY 57
E N+ ++ E ++VAE +K E QY
Sbjct: 416 ELNDPLDQLERFKNQVAEKEKGDEEAQY 443
>ref|NP_222780.1| putative [Helicobacter pylori J99]
Length = 500
Score = 20.0 bits (40), Expect = 9.4
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 16 SLAPVQSLGNYKRVEKNEKVENNEAALDRVAEIKKAIENNQYKIN 60
S+ V S + KN V+N + AL+ E K N+ IN
Sbjct: 291 SVLGVPSYNESLTLAKNRCVKNFKEALEGFTEKIKESPNDSNAIN 335
>ref|NP_222774.1| putative [Helicobacter pylori J99]
Length = 327
Score = 20.0 bits (40), Expect = 9.4
Identities = 12/58 (20%), Positives = 26/58 (44%)
Query: 12 NAVSSLAPVQSLGNYKRVEKNEKVENNEAALDRVAEIKKAIENNQYKINLHETSHKMA 69
N + L N + + EK+ ++ L+R K++E + K +L + ++A
Sbjct: 230 NTNNQLRQALENSNVQLAQAKEKIAIEKSELEREIARLKSLEGMEAKSDLDLHNRRLA 287
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.309 0.126 0.323
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,086
Number of Sequences: 1491
Number of extensions: 3281
Number of successful extensions: 32
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of query: 76
length of database: 494,079
effective HSP length: 52
effective length of query: 24
effective length of database: 416,547
effective search space: 9997128
effective search space used: 9997128
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.8 bits)
S2: 40 (20.0 bits)