BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644743|ref|NP_206913.1| hypothetical protein
[Helicobacter pylori 26695]
(98 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222826.1| putative [Helicobacter pylori J99] 184 3e-49
ref|NP_223787.1| putative [Helicobacter pylori J99] 27 0.080
ref|NP_223054.1| septum formation protein [Helicobacter pyl... 27 0.14
ref|NP_223801.1| putative Outer membrane protein [Helicobac... 25 0.40
ref|NP_223571.1| CARBAMOYL-PHOSPHATE SYNTHASE LARGE CHAIN [... 24 0.89
ref|NP_224090.1| putative [Helicobacter pylori J99] 22 3.4
ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATE... 22 4.4
ref|NP_223579.1| stress protein [Helicobacter pylori J99] 21 7.5
ref|NP_222729.1| putative Outer membrane protein [Helicobac... 21 7.5
ref|NP_224134.1| putative [Helicobacter pylori J99] 20 9.8
ref|NP_222988.1| putative [Helicobacter pylori J99] 20 9.8
>ref|NP_222826.1| putative [Helicobacter pylori J99]
Length = 98
Score = 184 bits (468), Expect = 3e-49
Identities = 89/98 (90%), Positives = 93/98 (94%)
Query: 1 MTINTHYTPNFTQLQTLNNINNDATIKDRNQVEQDLQQSNIQDGFSQDNAKNAPDFDRLQ 60
MTINTHYTPNFTQLQTLNNINNDATIKDRNQ EQDLQQS+IQDGFSQDN +NAPDFDRLQ
Sbjct: 1 MTINTHYTPNFTQLQTLNNINNDATIKDRNQAEQDLQQSSIQDGFSQDNTQNAPDFDRLQ 60
Query: 61 ALNAINNDGEIKDRSQVEKNLASGENIPEIYSSLDTYA 98
ALNAINNDGEIKD+SQVEK+L GEN PEIYSSLDTYA
Sbjct: 61 ALNAINNDGEIKDKSQVEKSLVDGENTPEIYSSLDTYA 98
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 27.3 bits (59), Expect = 0.080
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 11/63 (17%)
Query: 30 NQVEQDLQQSNIQDGFSQDNAK-------NAPDFDRLQALNAI---NNDGEIKDRSQVEK 79
N +D QQ N+ G SQ + K N F+ L+++N I N G+ S + K
Sbjct: 5 NMGNKDKQQQNVSSGISQISLKKVATFDENGASFENLKSINFIYGANGSGKTTTSSFL-K 63
Query: 80 NLA 82
NLA
Sbjct: 64 NLA 66
>ref|NP_223054.1| septum formation protein [Helicobacter pylori J99]
Length = 844
Score = 26.6 bits (57), Expect = 0.14
Identities = 22/96 (22%), Positives = 40/96 (40%), Gaps = 3/96 (3%)
Query: 1 MTINTHYTPNFTQLQTLNNINNDATIKDRNQVEQDL-QQSNIQDGFSQDNAKNAPDFDRL 59
M I+ T N + + N+ D + Q+ Q+ NI++ + +NAP F L
Sbjct: 288 MPISASNTENHDKTENHKTPNHPIKEDDLQESPQENPQKENIEENIEEKETQNAPSFSPL 347
Query: 60 QALNAINNDGEIKDRSQVEKNLASGENIPEIYSSLD 95
L + +K+ S+ K + G + E+ D
Sbjct: 348 -TLTSAKKPVMVKELSE-NKEILDGLDYGEVQKPKD 381
>ref|NP_223801.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 1237
Score = 25.0 bits (53), Expect = 0.40
Identities = 13/38 (34%), Positives = 19/38 (49%)
Query: 39 SNIQDGFSQDNAKNAPDFDRLQALNAINNDGEIKDRSQ 76
SN Q F Q A ++ + +LN NN E+K + Q
Sbjct: 144 SNTQSAFDQGIALSSNIISAVNSLNPSNNSQEVKAQLQ 181
Score = 20.8 bits (42), Expect = 7.5
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 2 TINTHYTPNFTQLQTLNNINNDATIKDRN 30
T NT N ++L+ + +NN+ K N
Sbjct: 544 TTNTQAKSNASKLKAMVMVNNEEEAKTTN 572
Score = 20.4 bits (41), Expect = 9.8
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 23 DATIKDRNQVEQDLQQSN 40
DA I RNQV+ Q+N
Sbjct: 1022 DAMINARNQVQNAQNQAN 1039
>ref|NP_223571.1| CARBAMOYL-PHOSPHATE SYNTHASE LARGE CHAIN [Helicobacter pylori J99]
Length = 1085
Score = 23.9 bits (50), Expect = 0.89
Identities = 15/63 (23%), Positives = 32/63 (49%), Gaps = 1/63 (1%)
Query: 3 INTHYTPNFTQLQTLNNIN-NDATIKDRNQVEQDLQQSNIQDGFSQDNAKNAPDFDRLQA 61
IN+ + +L+ L N+ +DA I + + ++L+ S + ++ N + AP F+ +
Sbjct: 467 INSSVLTDAKKLRGLKNLGFSDARIATKIKENENLEVSPFEVELARSNLQIAPHFEEVDT 526
Query: 62 LNA 64
A
Sbjct: 527 CAA 529
>ref|NP_224090.1| putative [Helicobacter pylori J99]
Length = 841
Score = 21.9 bits (45), Expect = 3.4
Identities = 14/42 (33%), Positives = 19/42 (44%), Gaps = 2/42 (4%)
Query: 12 TQLQTLNNINNDATIKDRNQVEQDLQQSNIQ--DGFSQDNAK 51
T LQT N+ T D N E + Q N+ D +D+ K
Sbjct: 92 TSLQTNTATTNNETPNDTNNAEAEGQIENLDLPDLIGKDSLK 133
>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN
[Helicobacter pylori J99]
Length = 1167
Score = 21.6 bits (44), Expect = 4.4
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 39 SNIQDGFSQDNAKNAPDFDRLQALNAINNDGEIK 72
S+++ GFS+ N P+ + L + + D E K
Sbjct: 530 SHLEAGFSKVAVFNLPNLNNLAITSVVRQDLEDK 563
>ref|NP_223579.1| stress protein [Helicobacter pylori J99]
Length = 310
Score = 20.8 bits (42), Expect = 7.5
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 59 LQALNAINNDGEIKDRSQVEKN 80
++AL I+ND D +++KN
Sbjct: 257 IRALQKISNDYTNNDYKEIDKN 278
>ref|NP_222729.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 668
Score = 20.8 bits (42), Expect = 7.5
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 60 QALNAINNDGEIKDRSQVEKNLAS 83
+A + N GE+K S +NL++
Sbjct: 32 EAAQMVKNTGELKKLSDTYENLSN 55
>ref|NP_224134.1| putative [Helicobacter pylori J99]
Length = 479
Score = 20.4 bits (41), Expect = 9.8
Identities = 12/42 (28%), Positives = 19/42 (44%)
Query: 3 INTHYTPNFTQLQTLNNINNDATIKDRNQVEQDLQQSNIQDG 44
I+ H T QT NN A ++ R+ E+ + +DG
Sbjct: 294 ISVHKTEPLEDPQTFEAKNNFAILQARSSTEKCKRARARKDG 335
>ref|NP_222988.1| putative [Helicobacter pylori J99]
Length = 478
Score = 20.4 bits (41), Expect = 9.8
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 8 TPNFTQLQTLNNINNDATIKDRNQVEQDLQQSNIQDGFSQ 47
T +F LQ LN+ +DA + ++ EQ + IQ F +
Sbjct: 56 TSSFRLLQVLNDEVSDAFLIIQDFKEQRIIHKIIQTHFKR 95
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.308 0.126 0.340
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,952
Number of Sequences: 1491
Number of extensions: 4280
Number of successful extensions: 15
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of query: 98
length of database: 494,079
effective HSP length: 64
effective length of query: 34
effective length of database: 398,655
effective search space: 13554270
effective search space used: 13554270
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 41 (20.4 bits)