BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645737|ref|NP_207914.1| peptidyl-prolyl cis-trans
isomerase, FKBP-type rotamase (slyD) [Helicobacter pylori 26695]
(185 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223769.1| FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMER... 361 e-102
ref|NP_223449.1| TRIGGER FACTOR [Helicobacter pylori J99] 25 1.7
ref|NP_222977.1| putative [Helicobacter pylori J99] 24 2.9
ref|NP_224108.1| PEPTIDYL-TRNA HYDROLASE [Helicobacter pylo... 23 3.7
ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori... 23 4.9
ref|NP_223537.1| vacuolating cytotoxin [Helicobacter pylori... 23 4.9
ref|NP_223309.1| UTP--GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERA... 23 4.9
>ref|NP_223769.1| FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE [Helicobacter pylori
J99]
Length = 185
Score = 361 bits (927), Expect = e-102
Identities = 176/185 (95%), Positives = 177/185 (95%)
Query: 1 MQNHDLESIKQAALIEYEVREQGSSIVLDSNISKEPLEFIIGTNQIIAGLEKAVLKAQIG 60
MQNHDLESIKQAALIEYEVREQGSS VLDSNISKEPLEFIIG NQII GLEKAVLKAQIG
Sbjct: 1 MQNHDLESIKQAALIEYEVREQGSSDVLDSNISKEPLEFIIGANQIIVGLEKAVLKAQIG 60
Query: 61 EWEEVVIAPEEAYGVYESSYLQEVPRDQFEGIELEKGMSVFGQTEDNQTIQAIIKDFSAT 120
EWEE+VIAPEEAYGVYES YLQEVPRDQFEGIELEKGMSVFGQTEDNQTIQA IKDFS T
Sbjct: 61 EWEEIVIAPEEAYGVYESGYLQEVPRDQFEGIELEKGMSVFGQTEDNQTIQATIKDFSNT 120
Query: 121 HVMVDYNHPLAGKTLAFRFKVLGFREVSEEEILASHHGGGTGCCGGHGGHGGKKGGGCGC 180
HVMVDYNHPLAGKTLAFRFKVLGFREVSEEEILASHH GTGCCGGHGGHGGKKGGGCGC
Sbjct: 121 HVMVDYNHPLAGKTLAFRFKVLGFREVSEEEILASHHDSGTGCCGGHGGHGGKKGGGCGC 180
Query: 181 SCSHG 185
SCSHG
Sbjct: 181 SCSHG 185
>ref|NP_223449.1| TRIGGER FACTOR [Helicobacter pylori J99]
Length = 451
Score = 24.6 bits (52), Expect = 1.7
Identities = 16/86 (18%), Positives = 38/86 (43%), Gaps = 7/86 (8%)
Query: 35 EPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEAYGVYESSYLQEVPRDQFEGIEL 94
E I+G+ Q++ EKA+L Q E +E + Y + + + + + I++
Sbjct: 187 ENFSLILGSKQMLEDFEKALLGMQASEEKEFPLTFPSGYHAEHLAGKEALFKVKLRQIQV 246
Query: 95 EKGMSVFGQ-------TEDNQTIQAI 113
+ + + + E+N T++ +
Sbjct: 247 REALEINDELAKIVLANEENATLELL 272
>ref|NP_222977.1| putative [Helicobacter pylori J99]
Length = 327
Score = 23.9 bits (50), Expect = 2.9
Identities = 15/63 (23%), Positives = 31/63 (48%), Gaps = 1/63 (1%)
Query: 32 ISKEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEAYGVYES-SYLQEVPRDQFE 90
+ ++P EFI + G++ + + E +E + + EEA G+ S +++ D +
Sbjct: 186 LEEQPEEFIESKEEDSMGMDNEAVDLFLSEIQEDIDSLEEAIGLDSSKDNSEKITEDAYS 245
Query: 91 GIE 93
IE
Sbjct: 246 LIE 248
>ref|NP_224108.1| PEPTIDYL-TRNA HYDROLASE [Helicobacter pylori J99]
Length = 186
Score = 23.5 bits (49), Expect = 3.7
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 165 GGHGGHGGKKGGGCGCSCSH 184
GG+GGH G K CS S+
Sbjct: 101 GGNGGHNGLKSIDALCSNSY 120
>ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 849
Score = 23.1 bits (48), Expect = 4.9
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 77 ESSYLQEVPRDQFEGIELEKGMSVFGQTEDNQT 109
E L P +FEG +L M FG E+N T
Sbjct: 655 EGRVLPLKPALRFEGYDLSDIMQGFGFVEENLT 687
>ref|NP_223537.1| vacuolating cytotoxin [Helicobacter pylori J99]
Length = 1288
Score = 23.1 bits (48), Expect = 4.9
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 60 GEWEEVVIAPEEAYGVYESSYLQEVPRDQFEGIELEKGMSVFGQTEDNQTIQAIIKDFSA 119
G+W ++ + ++A G Y+ S L+ + + ++K GQ N KD +
Sbjct: 127 GQWNKLEVDMKDAVGTYKLSGLRNFTGGDLD-VNMQKATLRLGQFNGNSFTS--YKDSAD 183
Query: 120 THVMVDYN 127
V++N
Sbjct: 184 RTTRVNFN 191
>ref|NP_223309.1| UTP--GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE [Helicobacter pylori
J99]
Length = 273
Score = 23.1 bits (48), Expect = 4.9
Identities = 17/62 (27%), Positives = 25/62 (39%), Gaps = 10/62 (16%)
Query: 32 ISKEPLEFIIGTNQIIAGLEKAVLKAQIGEW----------EEVVIAPEEAYGVYESSYL 81
I EP I+ + I+ +VLK + EEVV+ YGV +L
Sbjct: 119 IGNEPFAVILADDLCISHEYPSVLKQMTSLYQKYQCSIVAIEEVVLEEVSKYGVIRGEWL 178
Query: 82 QE 83
+E
Sbjct: 179 EE 180
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.315 0.137 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 197,024
Number of Sequences: 1491
Number of extensions: 8797
Number of successful extensions: 22
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 7
length of query: 185
length of database: 494,079
effective HSP length: 72
effective length of query: 113
effective length of database: 386,727
effective search space: 43700151
effective search space used: 43700151
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 46 (22.3 bits)