BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645739|ref|NP_207916.1| peptidoglycan associated
lipoprotein precursor (omp18) [Helicobacter pylori 26695]
(179 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223771.1| putative Outer membrane protein [Helicobac... 342 3e-96
ref|NP_223470.1| FLAGELLAR MOTOR PROTEIN [Helicobacter pylo... 32 0.010
ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEI... 30 0.049
ref|NP_223247.1| putative SIDEROPHORE-MEDIATED IRON TRANSPO... 28 0.14
ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT ... 27 0.42
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 27 0.42
ref|NP_224045.1| FORMYLTETRAHYDROFOLATE HYDROLASE [Helicoba... 25 1.2
ref|NP_223919.1| ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE [He... 25 1.2
ref|NP_224172.1| FOLYLPOLYGLUTAMATE SYNTHASE [Helicobacter ... 24 2.1
ref|NP_223515.1| putative [Helicobacter pylori J99] 24 2.1
ref|NP_223773.1| putative [Helicobacter pylori J99] 24 2.7
ref|NP_223500.1| PHOSPHOMETHYLPYRIMIDINE KINASE [Helicobact... 24 2.7
ref|NP_222899.1| Fumarate reductase [Helicobacter pylori J99] 24 2.7
ref|NP_223493.1| putative [Helicobacter pylori J99] 23 4.6
ref|NP_223186.1| putative [Helicobacter pylori J99] 23 6.0
ref|NP_224064.1| putative Outer membrane protein [Helicobac... 22 7.9
>ref|NP_223771.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 179
Score = 342 bits (877), Expect = 3e-96
Identities = 171/179 (95%), Positives = 175/179 (97%)
Query: 1 MKRSSVFSFLVAFLLVAGCSHKMDNKTVAGDVSAKTVQTAPVTTEPAPEKEEPKQEPAPV 60
MKRSSVFSFLVAFLLV GCSHKMDNKTVAGDVS K VQTAPVTTEPAPEKEEPKQEPAPV
Sbjct: 1 MKRSSVFSFLVAFLLVVGCSHKMDNKTVAGDVSTKAVQTAPVTTEPAPEKEEPKQEPAPV 60
Query: 61 VEEKPAVESGTIIASIYFDFDKYEIKESDQETLDEIVQKAKENHMQVLLEGNTDEFGSSE 120
VEEKPA+ESGTIIASIYFDFDKYEIKESDQETLDEIVQKAKENHMQVLLEGNTDEFGSSE
Sbjct: 61 VEEKPAIESGTIIASIYFDFDKYEIKESDQETLDEIVQKAKENHMQVLLEGNTDEFGSSE 120
Query: 121 YNQALGVKRTLSVKNALVIKGVEKDMIKTISFGETKPKCAQKTRECYKENRRVDVKLMK 179
YNQALGVKRTLSVKNALVIKGVEKDMIKTISFGE+KPKC QKTRECY+ENRRVDVKL+K
Sbjct: 121 YNQALGVKRTLSVKNALVIKGVEKDMIKTISFGESKPKCVQKTRECYRENRRVDVKLVK 179
>ref|NP_223470.1| FLAGELLAR MOTOR PROTEIN [Helicobacter pylori J99]
Length = 257
Score = 32.0 bits (71), Expect = 0.010
Identities = 34/158 (21%), Positives = 67/158 (41%), Gaps = 14/158 (8%)
Query: 31 DVSAKTVQTAPVTTEPAPEKEEPKQEPAPVVEEK--PAVESGTII---ASIYFDFDKYEI 85
D + Q A +++PA + E K A E ++ G+++ +S+ F+ +
Sbjct: 74 DSGKEEEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSVLKLPSSLLFENATSDA 133
Query: 86 KESDQ----ETLDEIVQKAKENHMQVLLEGNTDEFGSSEY----NQALGVKRTLSVKNAL 137
D E + +I+QK + + + + G TD ++ + L R V L
Sbjct: 134 INQDMMLYIERIAKIIQKLPKR-VHINVRGFTDNTPLNKTRFKSHYELAANRAYRVMKVL 192
Query: 138 VIKGVEKDMIKTISFGETKPKCAQKTRECYKENRRVDV 175
+ GV+ + + S+G T P + E +N RV++
Sbjct: 193 IQYGVDPNQLSFSSYGSTNPIAPNDSLENRMKNNRVEI 230
>ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEIN [Helicobacter pylori
J99]
Length = 280
Score = 29.6 bits (65), Expect = 0.049
Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 18/105 (17%)
Query: 45 EPAPE-KEEPKQEPAPVVEEKPAVESGTIIASIYFDFDKYEIKESDQE--------TLDE 95
+P P+ K EPK +P P VEE E + K E KE +E T D
Sbjct: 108 KPKPKPKPEPKPKPEPKVEEPKKEEPKE-------EPKKEEAKEEAKEKSVPKQVTTKDI 160
Query: 96 IVQKAKENHMQVLLEGNTDEFGSSEYNQALGVKRTLSVKNALVIK 140
+ +K K+ EG T E + YN + + + ++ A+ K
Sbjct: 161 VKEKDKQEESNKTSEGATSE--AQAYNPGVSNEFLMKIQTAISSK 203
Score = 25.4 bits (54), Expect = 0.93
Identities = 10/18 (55%), Positives = 13/18 (71%)
Query: 48 PEKEEPKQEPAPVVEEKP 65
P+KEEPK+E P + KP
Sbjct: 86 PKKEEPKKETKPKPKPKP 103
Score = 23.9 bits (50), Expect = 2.7
Identities = 22/81 (27%), Positives = 30/81 (36%), Gaps = 17/81 (20%)
Query: 2 KRSSVFSFLVAFLLVA--------------GCSHKMDNKTVAGDVSAKTVQTAPVTTEPA 47
K S+ SFL++F L A + K S T E A
Sbjct: 12 KVSTSVSFLISFALYAIGFGYFLLREDAPEPLAQAGTTKVTMSLASINTNSNTKTNAESA 71
Query: 48 PEKEEPKQEPAPVVEEKPAVE 68
KEEPK++P +E+P E
Sbjct: 72 KPKEEPKEKPK---KEEPKKE 89
>ref|NP_223247.1| putative SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEIN [Helicobacter
pylori J99]
Length = 317
Score = 28.1 bits (61), Expect = 0.14
Identities = 14/39 (35%), Positives = 18/39 (45%)
Query: 27 TVAGDVSAKTVQTAPVTTEPAPEKEEPKQEPAPVVEEKP 65
T+AG T T P P E+PK EP P + +P
Sbjct: 87 TLAGPQKPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPEP 125
>ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT [Helicobacter pylori J99]
Length = 2890
Score = 26.6 bits (57), Expect = 0.42
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 86 KESDQETLDEIVQKAKENHMQVLLEGNTDEFGSSEYNQALGVKRTLSVKNALVIK 140
KES E + + + ++ H ++ LE EFG S+Y ++R ++ L IK
Sbjct: 45 KESGIEKVFKSIFPIQDEHNRITLEYAGCEFGKSKYTVREAMERGITYSIPLKIK 99
Score = 25.0 bits (53), Expect = 1.2
Identities = 19/80 (23%), Positives = 36/80 (44%)
Query: 24 DNKTVAGDVSAKTVQTAPVTTEPAPEKEEPKQEPAPVVEEKPAVESGTIIASIYFDFDKY 83
D+K + GD+ +K + T A + E EP + + A+ S +II++ F
Sbjct: 2781 DSKFIEGDLVSKKLFKEENTRVIALKGEPAIAEPVLLGITRAAIGSDSIISAASFQETTK 2840
Query: 84 EIKESDQETLDEIVQKAKEN 103
+ E+ + ++ KEN
Sbjct: 2841 VLTEASIAMKKDFLEDLKEN 2860
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 26.6 bits (57), Expect = 0.42
Identities = 11/34 (32%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 33 SAKTVQTAPVTTEPAPEK--EEPKQEPAPVVEEK 64
++KT + +P P+K E+ K+ PAP++++K
Sbjct: 91 ASKTPKKEETKAQPKPKKTKEKKKEAPAPIIKKK 124
Score = 22.3 bits (46), Expect = 7.9
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 22 KMDNKTVAGDVSAKTVQTAPVTTEPAPEKEEPKQEPAP 59
K DNK +A T + P+KEE K +P P
Sbjct: 71 KQDNKDDLN--TAATPKPLAKKASKTPKKEETKAQPKP 106
>ref|NP_224045.1| FORMYLTETRAHYDROFOLATE HYDROLASE [Helicobacter pylori J99]
Length = 293
Score = 25.0 bits (53), Expect = 1.2
Identities = 11/27 (40%), Positives = 18/27 (65%)
Query: 84 EIKESDQETLDEIVQKAKENHMQVLLE 110
EIKE ++ +L + KA EN ++L+E
Sbjct: 61 EIKEQEERSLKTALFKALENFSELLIE 87
>ref|NP_223919.1| ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE [Helicobacter pylori J99]
Length = 335
Score = 25.0 bits (53), Expect = 1.2
Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 7/93 (7%)
Query: 24 DNKTVAGDVSAKTVQTAPVTTEPAP--EKEEPKQEPAPVVEEK-----PAVESGTIIASI 76
+N+ + D+SAK P + +E Q ++E K V + + + +
Sbjct: 238 NNEILEYDLSAKDFDLPPYDLKELQIENAKESVQACLDILENKGKDSHTMVVAANVASLL 297
Query: 77 YFDFDKYEIKESDQETLDEIVQKAKENHMQVLL 109
Y ++KE TL+ + KA H+Q ++
Sbjct: 298 YLSHRAKDLKEGVSMTLEHLKTKAPYAHLQKII 330
>ref|NP_224172.1| FOLYLPOLYGLUTAMATE SYNTHASE [Helicobacter pylori J99]
Length = 389
Score = 24.3 bits (51), Expect = 2.1
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 90 QETLDEIVQK-AKENHMQVLLEGNTDEFGSSEYNQALGVKRTLSVKNALVIKGVE 143
QE + + QK AK+ H Q+++ N G S+Y + + L++ + +K E
Sbjct: 193 QELVLNVAQKIAKDKHAQLIVVQNEISKGVSDYIERHHLAHFLAMNLEVALKAFE 247
>ref|NP_223515.1| putative [Helicobacter pylori J99]
Length = 541
Score = 24.3 bits (51), Expect = 2.1
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 24 DNKTVAGDVSAKTVQTAPVTTEPAPEKEEP----KQEPAPVVEEKPAVESGTIIASIYFD 79
+N G+ + P++ E A +KE P K+E + EEK ++ + F+
Sbjct: 458 NNAIQQGETKNNESKNTPISKENAAKKEAPKPSSKEEKRRLKEEKKKAKAEQ--RAREFE 515
Query: 80 FDKYEIKESDQETLDE 95
E +E D++ L+E
Sbjct: 516 QRAREHQERDEKELEE 531
>ref|NP_223773.1| putative [Helicobacter pylori J99]
Length = 263
Score = 23.9 bits (50), Expect = 2.7
Identities = 22/92 (23%), Positives = 37/92 (39%), Gaps = 29/92 (31%)
Query: 1 MKRSSVF------SFLVAFLLVAGC---SHKMDNKTVAGDVSAKTVQTAPVTTEPAPE-- 49
M +S++F +FL+ LL+ G H + + + D++ K Q + E P
Sbjct: 1 MSKSAIFVLSGFLAFLLYALLLYGLLLERHNKEAEKILLDLNKKDEQAIDLNLEDLPSEK 60
Query: 50 ------------------KEEPKQEPAPVVEE 63
KEEPK+EP +E+
Sbjct: 61 KNEKIEKVTEKQGDFLEPKEEPKEEPEESLED 92
>ref|NP_223500.1| PHOSPHOMETHYLPYRIMIDINE KINASE [Helicobacter pylori J99]
Length = 269
Score = 23.9 bits (50), Expect = 2.7
Identities = 13/20 (65%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
Query: 122 NQALGVKRTLSVKNALVIKG 141
++A+GV R L VKNA VIKG
Sbjct: 159 SKAMGVLRDLGVKNA-VIKG 177
>ref|NP_222899.1| Fumarate reductase [Helicobacter pylori J99]
Length = 714
Score = 23.9 bits (50), Expect = 2.7
Identities = 17/58 (29%), Positives = 25/58 (42%), Gaps = 8/58 (13%)
Query: 81 DKYEIKESDQETLDEIVQKAKENHMQVLLEGNTDEFGSSEYNQALGVKRTLSVKNALV 138
D YEI+E +E +DE V V EG E E + + + VKN ++
Sbjct: 489 DVYEIRERMKEVMDEKV--------GVFREGKKLEEALKELQELYARSKNICVKNKVL 538
>ref|NP_223493.1| putative [Helicobacter pylori J99]
Length = 201
Score = 23.1 bits (48), Expect = 4.6
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 8 SFLVAFLLVAGCSHKMDNKTVAGDV--SAKTVQTAPV--TTEPAPEKE-EPKQEPAPVVE 62
S LVA LL++GCS T A + SA +Q AP+ T P K +P P
Sbjct: 12 SLLVATLLISGCSLFKKRNTNAQLIPPSANGLQ-APIYPPTNFTPRKSIQPLPSPRLENN 70
Query: 63 EKPAVES 69
++P + S
Sbjct: 71 DQPIISS 77
>ref|NP_223186.1| putative [Helicobacter pylori J99]
Length = 283
Score = 22.7 bits (47), Expect = 6.0
Identities = 17/67 (25%), Positives = 23/67 (33%), Gaps = 11/67 (16%)
Query: 103 NHMQVLLEGNTDEFGSSEYNQA-----------LGVKRTLSVKNALVIKGVEKDMIKTIS 151
NH E D F +Y QA +G+ K L KGV+ D K
Sbjct: 55 NHKTYYFENGLDHFNQGQYKQAFKDFKLAQEYSIGLGNVYLAKMYLEGKGVKVDYKKAQF 114
Query: 152 FGETKPK 158
+ + K
Sbjct: 115 YAQNAIK 121
>ref|NP_224064.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 744
Score = 22.3 bits (46), Expect = 7.9
Identities = 9/26 (34%), Positives = 13/26 (49%)
Query: 38 QTAPVTTEPAPEKEEPKQEPAPVVEE 63
QT T EK +PK +P P+ +
Sbjct: 46 QTQEQTIATTQEKPKPKPKPKPITPQ 71
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.311 0.128 0.346
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 175,797
Number of Sequences: 1491
Number of extensions: 7615
Number of successful extensions: 46
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 24
length of query: 179
length of database: 494,079
effective HSP length: 72
effective length of query: 107
effective length of database: 386,727
effective search space: 41379789
effective search space used: 41379789
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 46 (22.3 bits)