BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645741|ref|NP_207918.1| hypothetical protein
[Helicobacter pylori 26695]
(193 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223773.1| putative [Helicobacter pylori J99] 345 5e-97
ref|NP_223025.1| putative [Helicobacter pylori J99] 39 9e-05
ref|NP_223830.1| putative [Helicobacter pylori J99] 38 2e-04
ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter py... 35 0.001
ref|NP_223788.1| putative [Helicobacter pylori J99] 32 0.008
ref|NP_222823.1| 24kDa chaperone [Helicobacter pylori J99] 32 0.008
ref|NP_224152.1| DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N... 31 0.019
ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATE... 31 0.019
ref|NP_222782.1| putative [Helicobacter pylori J99] 31 0.019
ref|NP_223176.1| putative [Helicobacter pylori J99] 31 0.025
ref|NP_222840.1| putative [Helicobacter pylori J99] 30 0.055
ref|NP_223643.1| putative [Helicobacter pylori J99] 29 0.072
ref|NP_223318.1| putative Outer membrane protein [Helicobac... 29 0.072
ref|NP_223645.1| putative [Helicobacter pylori J99] 29 0.094
ref|NP_223195.1| cag island protein [Helicobacter pylori J99] 29 0.094
ref|NP_222757.1| DNA transformation compentancy [Helicobact... 29 0.094
ref|NP_222831.1| putative [Helicobacter pylori J99] 28 0.12
ref|NP_223515.1| putative [Helicobacter pylori J99] 28 0.16
ref|NP_223189.1| cag island protein [Helicobacter pylori J99] 28 0.16
ref|NP_223108.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 28 0.16
ref|NP_223656.1| putative [Helicobacter pylori J99] 28 0.21
ref|NP_223625.1| putative [Helicobacter pylori J99] 27 0.27
ref|NP_223614.1| putative [Helicobacter pylori J99] 27 0.36
ref|NP_222772.1| putative [Helicobacter pylori J99] 27 0.36
ref|NP_224039.1| putative histidine and glutamine-rich meta... 27 0.47
ref|NP_223642.1| putative [Helicobacter pylori J99] 26 0.61
ref|NP_223404.1| putative [Helicobacter pylori J99] 26 0.61
ref|NP_223610.1| putative [Helicobacter pylori J99] 26 0.79
ref|NP_223561.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 25 1.0
ref|NP_223365.1| putative [Helicobacter pylori J99] 25 1.4
ref|NP_223111.1| RNA POLYMERASE SIGMA FACTOR (sigma 28) [He... 25 1.4
ref|NP_223574.1| putative vacuolating cytotoxin (VacA) para... 25 1.8
ref|NP_223322.1| putative [Helicobacter pylori J99] 25 1.8
ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99] 25 1.8
ref|NP_223306.1| GLUTAMYL-TRNA SYNTHETASE [Helicobacter pyl... 24 2.3
ref|NP_223040.1| putative [Helicobacter pylori J99] 24 2.3
ref|NP_223787.1| putative [Helicobacter pylori J99] 24 3.0
ref|NP_223219.1| putative [Helicobacter pylori J99] 24 3.0
ref|NP_223180.1| putative [Helicobacter pylori J99] 24 3.0
ref|NP_223029.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 24 3.0
ref|NP_223682.1| putative [Helicobacter pylori J99] 23 3.9
ref|NP_223635.1| DNA transfer protein [Helicobacter pylori ... 23 3.9
ref|NP_223502.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 23 3.9
ref|NP_223147.1| putative Outer membrane protein [Helicobac... 23 3.9
ref|NP_223054.1| septum formation protein [Helicobacter pyl... 23 3.9
ref|NP_222871.1| DELTA-AMINOLEVULINIC ACID DEHYDRATASE [Hel... 23 3.9
ref|NP_223990.1| putative [Helicobacter pylori J99] 23 5.1
ref|NP_223618.1| putative [Helicobacter pylori J99] 23 5.1
ref|NP_223258.1| putative [Helicobacter pylori J99] 23 5.1
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 23 5.1
ref|NP_222776.1| putative [Helicobacter pylori J99] 23 5.1
ref|NP_224176.1| TRANSCRIPTION-REPAIR COUPLING FACTOR [Heli... 23 6.7
ref|NP_223562.1| putative FLAGELLAR BASAL-BODY/ROD/HOOKPROT... 23 6.7
ref|NP_223222.1| ACETYL-COENZYME A CARBOXYLASE SUBUNIT A [H... 23 6.7
ref|NP_224183.1| FLAGELLAR HOOK-BASAL BODY COMPLEX PROTEIN ... 22 8.8
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 22 8.8
ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Heli... 22 8.8
ref|NP_223895.1| RIBOSOME RECYCLING FACTOR (RIBOSOME RELEAS... 22 8.8
ref|NP_223422.1| putative [Helicobacter pylori J99] 22 8.8
ref|NP_223088.1| putative [Helicobacter pylori J99] 22 8.8
ref|NP_223039.1| putative [Helicobacter pylori J99] 22 8.8
ref|NP_222738.1| putative [Helicobacter pylori J99] 22 8.8
>ref|NP_223773.1| putative [Helicobacter pylori J99]
Length = 263
Score = 345 bits (885), Expect = 5e-97
Identities = 171/196 (87%), Positives = 186/196 (94%), Gaps = 6/196 (3%)
Query: 3 TDKEGDFIDPKEQ-----EESLENIFSSLNDFQEKTDANAQKNEQKNEQEEEQRRLKEQQ 57
T+K+GDF++PKE+ EESLE+IFSSLNDFQEKTD NAQK+EQKNEQEE QRRL+EQQ
Sbjct: 69 TEKQGDFLEPKEEPKEEPEESLEDIFSSLNDFQEKTDKNAQKDEQKNEQEE-QRRLREQQ 127
Query: 58 RLRKNQKNQEMLKGLQQNLNQFAQKLESVKNKTLDLQIPKQDGVDEKAYQEWYAQIYQIL 117
RL++NQ+NQEMLKGLQQNLNQF QKLESVKNKTLDLQIPKQDGVDEKAYQEWYAQIYQIL
Sbjct: 128 RLKQNQENQEMLKGLQQNLNQFTQKLESVKNKTLDLQIPKQDGVDEKAYQEWYAQIYQIL 187
Query: 118 YKGWKGVFYHKASVSALIMIAKDGEFDYTILSYSDFKDYNKSVMTLLNDLKKVDFPPYPG 177
YKGW+GVFYHKASVS LIMI KDGEFDYTILSYSDFKDYNKSVMTLL+DLKKVDFPPYPG
Sbjct: 188 YKGWRGVFYHKASVSVLIMITKDGEFDYTILSYSDFKDYNKSVMTLLDDLKKVDFPPYPG 247
Query: 178 GSMISIQVNFTTKEEQ 193
G+MISI+VNFTTKEEQ
Sbjct: 248 GNMISIKVNFTTKEEQ 263
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 38.9 bits (89), Expect = 9e-05
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 12 PKEQEESLENIFSSLNDFQEKTDANAQKNEQKNEQEEEQRRLKEQQRLRKNQKNQEMLKG 71
PKE+ + E I + +E+ Q + E E Q +KE Q +Q+N++ +
Sbjct: 241 PKEETQEQEPIKEETQEIKEEKQEKTQDSPSAQELEAMQELVKEIQENSNDQENKKETQE 300
Query: 72 LQQNLNQFAQKLESVKNKTLDLQIPKQDGVDEKA 105
Q+N + Q +E T +L+IPK++ E A
Sbjct: 301 TQEN-TETPQDIE-----TQELEIPKEEETQEVA 328
Score = 31.2 bits (69), Expect = 0.019
Identities = 22/102 (21%), Positives = 52/102 (50%), Gaps = 6/102 (5%)
Query: 13 KEQEESLENIFSSLNDFQEKTDANAQKNEQKNEQEEEQR---RLKEQQRLRKNQKNQEML 69
KE+ + E + +LN+ + +T + E K E+ +E + + K++Q + +N +++E
Sbjct: 152 KEEPNNEEQLLPTLNEQEGETPKEEAQEEVKKEEVKEMQEEVKEKQKQEVAENPQDEEKP 211
Query: 70 KGLQQNLNQFAQKLESVKNK---TLDLQIPKQDGVDEKAYQE 108
K + + K E V + +L+ PK++ +++ +E
Sbjct: 212 KDDETQGSVEPPKDEEVSKELETQEELETPKEETQEQEPIKE 253
Score = 25.0 bits (53), Expect = 1.4
Identities = 23/134 (17%), Positives = 54/134 (40%), Gaps = 30/134 (22%)
Query: 2 PTDKEGDFIDPKEQEESLENIFSSLNDFQEKTDANAQKNEQKNEQEEEQRRLKE------ 55
P +E I ++QE++ ++ + + ++ Q+N E ++E + +E
Sbjct: 250 PIKEETQEIKEEKQEKTQDSPSAQELEAMQELVKEIQENSNDQENKKETQETQENTETPQ 309
Query: 56 -----QQRLRKNQKNQEML-------------------KGLQQNLNQFAQKLESVKNKTL 91
+ + K ++ QE+ K +Q+ ++ Q+LE+ K
Sbjct: 310 DIETQELEIPKEEETQEVAEKTQVQGLEKEEIAETPQEKEIQETQDETPQELEAQDEKLQ 369
Query: 92 DLQIPKQDGVDEKA 105
+ + PK + + E A
Sbjct: 370 ENETPKDESMQESA 383
>ref|NP_223830.1| putative [Helicobacter pylori J99]
Length = 383
Score = 37.7 bits (86), Expect = 2e-04
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 13 KEQEESLENIFSS---LNDFQEKTDANAQKNEQ---KNEQEEEQRRLKEQQRLRKNQKNQ 66
KE E + + S L ++KT+ QK EQ K EQE+++ ++Q+ ++ QK
Sbjct: 108 KEAENARDRANKSGIELEQEEQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTS 167
Query: 67 EMLKGLQQNLNQFAQKLESVKNKTLDLQ 94
+ Q + Q QK E K KT + Q
Sbjct: 168 NIETNNQIKVEQEQQKTEQEKQKTNNTQ 195
Score = 32.0 bits (71), Expect = 0.011
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 14 EQEESLENIFSSLNDFQEKTDANAQKNEQKNEQEEEQRRLKEQQRLRKNQKN--QEMLKG 71
EQE+ + +++ +N + N Q ++E+Q+ +E+Q+ QK+ + +
Sbjct: 146 EQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDLVNKAEQN 205
Query: 72 LQQNLNQFAQKLESVK 87
Q+N NQF K +K
Sbjct: 206 CQENHNQFFIKKLGIK 221
Score = 29.6 bits (65), Expect = 0.055
Identities = 16/75 (21%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Query: 30 QEKTDANAQKNEQKNEQEEEQRRLKEQQRLRKNQKNQEMLKGLQQNLNQFAQKLESVKNK 89
+++ + + + EQ+ ++ E++++ EQ++ + Q+ +Q Q QK E K K
Sbjct: 114 RDRANKSGIELEQEEQKTEQEKQKTEQEKQKTEQE--------KQKTEQEKQKTEQEKQK 165
Query: 90 TLDLQIPKQDGVDEK 104
T +++ Q V+++
Sbjct: 166 TSNIETNNQIKVEQE 180
>ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter pylori J99]
Length = 831
Score = 35.0 bits (79), Expect = 0.001
Identities = 22/49 (44%), Positives = 30/49 (60%), Gaps = 2/49 (4%)
Query: 39 KNEQKNEQEEEQRRLKEQQRLRKNQKNQEMLKGLQQNLNQFAQKLESVK 87
K QK EQ ++ LKEQ L++ QK K ++LNQ+ QKLES+K
Sbjct: 214 KVHQKMEQTNKEYFLKEQ--LKQIQKELGTDKQRDEDLNQYYQKLESIK 260
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 32.3 bits (72), Expect = 0.008
Identities = 20/88 (22%), Positives = 45/88 (50%), Gaps = 4/88 (4%)
Query: 16 EESLENIF----SSLNDFQEKTDANAQKNEQKNEQEEEQRRLKEQQRLRKNQKNQEMLKG 71
EE+ +N F L Q++ D +++ ++ +++E E RLK + +++ E K
Sbjct: 100 EEARKNAFLEQQKGLELLQKELDEKSKQVQELHQKEAEIERLKRENNEAESRLKAENEKK 159
Query: 72 LQQNLNQFAQKLESVKNKTLDLQIPKQD 99
L + L +K+E ++ +L+ +Q+
Sbjct: 160 LNEKLELEREKIEKALHEKNELKFKQQE 187
Score = 23.9 bits (50), Expect = 3.0
Identities = 22/78 (28%), Positives = 39/78 (49%), Gaps = 8/78 (10%)
Query: 5 KEGDFIDPKEQEESLENIFSSLNDFQEKTD-ANAQKNEQKNEQEEEQ-----RRLKEQQR 58
+E + + + + E+ + + L +EK + A +KNE K +Q+EEQ LK Q
Sbjct: 143 RENNEAESRLKAENEKKLNEKLELEREKIEKALHEKNELKFKQQEEQLEMLRNELKNAQ- 201
Query: 59 LRKNQKNQEMLKGLQQNL 76
RK + + + +G Q L
Sbjct: 202 -RKAELSSQQFQGEVQEL 218
>ref|NP_222823.1| 24kDa chaperone [Helicobacter pylori J99]
Length = 191
Score = 32.3 bits (72), Expect = 0.008
Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 12/94 (12%)
Query: 4 DKEGDFIDPKEQEESLENIFSSLNDFQEKTDANAQKNEQKNEQEEEQRRLKEQQRLRKNQ 63
++E D + PKE E +Q+ Q+ E+K E E++ +KE L+ +
Sbjct: 6 NQEHDHLSPKEPE-----------SYQKAYACKEQQGEEKQEASEKEGEIKEDFELKYQE 54
Query: 64 KNQEMLKGLQQNLNQFAQKLESVKNKTLDLQIPK 97
++ L+ + + ++LE K+ L+ K
Sbjct: 55 MREQYLR-VHADFENVKKRLERDKSMALEYAYEK 87
>ref|NP_224152.1| DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N) [Helicobacter pylori
J99]
Length = 522
Score = 31.2 bits (69), Expect = 0.019
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 13 KEQEESLENIFSSLNDFQEKTDANAQKNEQKNEQEEEQRRLKEQQRL--RKNQKNQEMLK 70
+ + SLE+ D +E+ + K E+ + +E+E RL EQ++L K + N ++
Sbjct: 171 ERERRSLEDKKRFQKDLEERLNFEKMKLERLDLKEDEYERLLEQKKLLSSKEKLNDKIAL 230
Query: 71 GLQ--QNLNQFAQKLESV 86
L +N ++ LESV
Sbjct: 231 ALDVLENTHKITHALESV 248
>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN
[Helicobacter pylori J99]
Length = 1167
Score = 31.2 bits (69), Expect = 0.019
Identities = 19/81 (23%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 13 KEQEESLENIFSSLNDFQEKTDANAQKNE----QKNEQEEEQRRLKEQQRLRKNQKN-QE 67
K+ ++LE+ + N + K+ AN+QK+E E + R + Q L+ ++ +
Sbjct: 630 KDVAKNLESKSGNKNKMEAKSQANSQKDEIFALINKEANRDARAIAYAQNLKGIKRELSD 689
Query: 68 MLKGLQQNLNQFAQKLESVKN 88
L+ + ++L F++ + KN
Sbjct: 690 KLENINKDLKDFSKSFDEFKN 710
Score = 29.3 bits (64), Expect = 0.072
Identities = 26/111 (23%), Positives = 50/111 (44%), Gaps = 4/111 (3%)
Query: 11 DPKEQEESLENIFSSLNDFQEKTDANAQKNEQKNEQEEEQRRLKEQQRLRKNQKNQEMLK 70
+P++ +L+ F +++ D N + KN+++ Q K Q LR+ N+ +
Sbjct: 17 NPQQFINNLQVAFIKVDNVVASFDPNQKPIVDKNDRDNRQAFEKISQ-LREEFANKAIKN 75
Query: 71 GLQQNLNQFAQKLESVKNKTLDLQIPKQDGVDEKAYQEWYAQIYQILYKGW 121
++N Q+ S N +D G K++Q++ Q YQI + W
Sbjct: 76 PTKKN--QYFSSFISKSNDLIDKDNLIDTGSSIKSFQKFGTQRYQI-FMNW 123
>ref|NP_222782.1| putative [Helicobacter pylori J99]
Length = 117
Score = 31.2 bits (69), Expect = 0.019
Identities = 16/61 (26%), Positives = 30/61 (48%)
Query: 8 DFIDPKEQEESLENIFSSLNDFQEKTDANAQKNEQKNEQEEEQRRLKEQQRLRKNQKNQE 67
D + K + E+LEN+ +D + + + NEQ EE +RL++Q ++ E
Sbjct: 30 DDLGQKLKSEALENMLKIAHDLENLEQETQYEMRKINEQLEEAKRLEKQVDMQDRHSQSE 89
Query: 68 M 68
+
Sbjct: 90 I 90
>ref|NP_223176.1| putative [Helicobacter pylori J99]
Length = 450
Score = 30.8 bits (68), Expect = 0.025
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 14/103 (13%)
Query: 4 DKEGDFIDPKEQEESLE----NIFSSLNDFQEKTDAN--------AQKNEQKNEQEEEQR 51
DK + ++ KE E + N SS N+ K N A+K K +EE+R
Sbjct: 346 DKGNEKVNAKENEREINQESANEPSSENNATLKDTENTSVLKESAAKKEAPKPSSKEEKR 405
Query: 52 RLKEQQRLRK-NQKNQEMLKGLQQNLNQFAQKLESVKNKTLDL 93
RLKE+++ K Q+ +E + +++ + ++LE + K L++
Sbjct: 406 RLKEEKKKAKAEQRAREFEQRAREHQERDEKELEE-RRKALEM 447
Score = 29.6 bits (65), Expect = 0.055
Identities = 20/83 (24%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 11 DPKEQEESLENIFSSLNDFQEKTDANAQKNEQKNEQEEEQRRLKEQQRLRKNQKNQEMLK 70
+PK+ + EN + +EK N QK E+K + +EE+RR +++++ K K +
Sbjct: 270 EPKKANQGTENAPT----LEEK---NYQKAERKFDAKEERRRSRDERKKTKATKKAMEFE 322
Query: 71 GLQQNLNQFAQKLESVKNKTLDL 93
++ ++ +K + K L++
Sbjct: 323 EREKEHDERDEKETEERRKALEM 345
Score = 29.3 bits (64), Expect = 0.072
Identities = 21/67 (31%), Positives = 33/67 (48%), Gaps = 4/67 (5%)
Query: 4 DKEGDFIDPKEQEESLENIFSSLNDFQEKTDANAQKNEQKNEQEEEQRRLKEQQRLRKNQ 63
+KE D D KE EE + + ++ EK NA++NE++ QE E K+
Sbjct: 325 EKEHDERDEKETEERRKAL--EMDKGNEKV--NAKENEREINQESANEPSSENNATLKDT 380
Query: 64 KNQEMLK 70
+N +LK
Sbjct: 381 ENTSVLK 387
>ref|NP_222840.1| putative [Helicobacter pylori J99]
Length = 285
Score = 29.6 bits (65), Expect = 0.055
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 24 SSLNDFQEKTDANAQKNEQKNEQEEEQRRLKEQQRLRKNQKNQEMLKGLQQNLNQ 78
SS D T+AN K E E ++ K+ ++ R+ K ++ + LQQ +
Sbjct: 221 SSNPDLDPMTNANTLKETASKEPETSSKKEKKPKKKRRLSKKEKQQQALQQEFEK 275
>ref|NP_223643.1| putative [Helicobacter pylori J99]
Length = 338
Score = 29.3 bits (64), Expect = 0.072
Identities = 15/56 (26%), Positives = 28/56 (49%)
Query: 34 DANAQKNEQKNEQEEEQRRLKEQQRLRKNQKNQEMLKGLQQNLNQFAQKLESVKNK 89
+ NAQ+ + E E + L + + + N +++GL++ + F K E V NK
Sbjct: 45 ETNAQRTQSTQENSESKEALLKAKSGQINYVKTRIIQGLKEKNSPFWDKPEIVANK 100
>ref|NP_223318.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 906
Score = 29.3 bits (64), Expect = 0.072
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 17 ESLENIFSSLNDFQ--EKTDANAQKNEQKNEQEEEQRRLKEQQ 57
E+LEN S ND ++T AQKNE +NE + + KE +
Sbjct: 19 EALENDGSKPNDLASPKETPKEAQKNEAQNETSQSNQTPKEMK 61
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 28.9 bits (63), Expect = 0.094
Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 14/124 (11%)
Query: 15 QEESLENIFSSLNDFQEKTDANAQKNEQKNEQEEEQRRLKEQQRLRKNQKNQEMLKGLQQ 74
QE + + LN+ QE+T A Q +++ QE+ + Q++ + Q QE +Q
Sbjct: 346 QESKITDNSVELNNAQEQT-AQEQTTQEQTTQEQTTQEQTTQEQTTQEQTTQEQTT-QEQ 403
Query: 75 NLNQFAQKLESVKNKT-LDLQIPKQDGVDEKAYQEWYAQIYQILYKGWKGVFYHKASVSA 133
+ + A ++K +T + IP +D K +E +L KG K +KA++ A
Sbjct: 404 DTQENAP--TTIKQETPITPAIPLNPKIDFKPSEE-------VLIKGAK--TRYKANIKA 452
Query: 134 LIMI 137
+ ++
Sbjct: 453 IELL 456
Score = 23.5 bits (49), Expect = 3.9
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 53 LKEQQRLRKNQKNQEMLKGLQQNLNQFAQKLESVKNKTL 91
L Q LR ++N++ L NL+ L +++N T+
Sbjct: 212 LSAQNGLRDLEENRDQEGRLLSNLDNLESLLNAIRNNTI 250
>ref|NP_223195.1| cag island protein [Helicobacter pylori J99]
Length = 522
Score = 28.9 bits (63), Expect = 0.094
Identities = 19/61 (31%), Positives = 33/61 (53%), Gaps = 6/61 (9%)
Query: 13 KEQEESLENIFSSLNDFQEKTDANAQKN----EQKNEQEEEQRRLKEQQRLR--KNQKNQ 66
K+Q E+ + L D QE+ ANA K +K +E ++R K++ ++ K+QK+
Sbjct: 204 KQQRENELDQMERLEDMQEQAQANALKQIEELNKKQAEEAVRQRAKDKISIKTDKSQKSP 263
Query: 67 E 67
E
Sbjct: 264 E 264
Score = 28.1 bits (61), Expect = 0.16
Identities = 23/96 (23%), Positives = 47/96 (48%), Gaps = 16/96 (16%)
Query: 8 DFIDPKEQEESLENIFSSLNDFQEKTDANAQKNEQKNEQEEEQRRLKEQQRLRKNQKNQE 67
D DPKE EE + + + + A++ QK ++++ ++R +E+ KN+ N E
Sbjct: 134 DAPDPKELEEQKKAL---------EKEKEAKEQAQKAQKDKREKRKEERA---KNRANLE 181
Query: 68 MLKGLQQNLNQFAQKLESVKNKTLDLQIPKQDGVDE 103
L N Q L + KN + ++ +++ +D+
Sbjct: 182 NLTNAMSN----PQNLSNNKNLSELIKQQRENELDQ 213
>ref|NP_222757.1| DNA transformation compentancy [Helicobacter pylori J99]
Length = 328
Score = 28.9 bits (63), Expect = 0.094
Identities = 19/77 (24%), Positives = 42/77 (53%), Gaps = 8/77 (10%)
Query: 13 KEQEESLENIFSSLNDFQEKTDANAQKNEQKNEQEEEQRRLKEQQRLRKNQKNQEMLKGL 72
K Q+E+ EN+ E +AQKN + ++E+E+ + KE++ + N +K +
Sbjct: 168 KPQKENQENM-------SENAPKDAQKNNKPLKEEKEETKEKEEETIIIGD-NTNAMKII 219
Query: 73 QQNLNQFAQKLESVKNK 89
++++ + + L+S + K
Sbjct: 220 KKDIQKGYKALKSSQRK 236
>ref|NP_222831.1| putative [Helicobacter pylori J99]
Length = 412
Score = 28.5 bits (62), Expect = 0.12
Identities = 24/93 (25%), Positives = 40/93 (42%), Gaps = 5/93 (5%)
Query: 14 EQEESLENIFSSLNDFQEKTDANAQKNEQKNEQEEEQRRLKEQQRLRKNQKNQEMLKGLQ 73
+++ LE N K + QK EQ+ ++ + EQ+R + N+ E L Q
Sbjct: 124 DKQIELEQEKKEANKSGIKLEQERQKTEQERQKTNKSEIELEQERQKTNKSGIE-LANSQ 182
Query: 74 QNLNQFAQKLESVKNKT----LDLQIPKQDGVD 102
Q QK E K K ++L+ KQ ++
Sbjct: 183 IKAEQERQKTEQEKQKANKSEIELEQQKQKTIN 215
Score = 25.4 bits (54), Expect = 1.0
Identities = 17/78 (21%), Positives = 37/78 (46%), Gaps = 11/78 (14%)
Query: 10 IDPKEQEESLENIFSSLNDFQEKTDANAQKNEQKNE---------QEEEQRRLKEQQRLR 60
I+ +++ + L + Q K + QK EQ+ + ++++Q+ + Q+ L
Sbjct: 162 IELEQERQKTNKSGIELANSQIKAEQERQKTEQEKQKANKSEIELEQQKQKTINTQRDLI 221
Query: 61 KNQKNQEMLKGLQQNLNQ 78
K QK + +K +QN +
Sbjct: 222 KEQK--DFIKETEQNCQE 237
>ref|NP_223515.1| putative [Helicobacter pylori J99]
Length = 541
Score = 28.1 bits (61), Expect = 0.16
Identities = 17/58 (29%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 37 AQKNEQKNEQEEEQRRLKEQQRLRK-NQKNQEMLKGLQQNLNQFAQKLESVKNKTLDL 93
A+K K +EE+RRLKE+++ K Q+ +E + +++ + ++LE + K L++
Sbjct: 482 AKKEAPKPSSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKELEE-RRKALEM 538
Score = 25.4 bits (54), Expect = 1.0
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 2 PTDKEGDFIDPKEQE--ESLENIFSSLNDFQEKTDANAQKNEQKNEQEE------EQRRL 53
PT + + I E + ES S N +++ + K E++ +EE EQR
Sbjct: 453 PTKDQNNAIQQGETKNNESKNTPISKENAAKKEAPKPSSKEEKRRLKEEKKKAKAEQRAR 512
Query: 54 KEQQRLRKNQKNQE 67
+ +QR R++Q+ E
Sbjct: 513 EFEQRAREHQERDE 526
>ref|NP_223189.1| cag island protein [Helicobacter pylori J99]
Length = 481
Score = 28.1 bits (61), Expect = 0.16
Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 35 ANAQKNEQKNEQEEEQRRLKEQQRLRKNQKNQEMLKGLQQNLNQFAQKLESVKNKTLDLQ 94
AN ++ E+K E+E++ + + K+ +NQ+ LK L+ L +K + K + +++
Sbjct: 297 ANEEEREKKLLAEKEKQETELAKYKLKDLENQKKLKALEAEL----KKKNTKKPRVVEVP 352
Query: 95 IP 96
IP
Sbjct: 353 IP 354
>ref|NP_223108.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 455
Score = 28.1 bits (61), Expect = 0.16
Identities = 20/87 (22%), Positives = 43/87 (48%), Gaps = 17/87 (19%)
Query: 32 KTDA--NAQKNEQKNEQEEEQRRLKEQQRLRKNQKNQEMLKGLQQNLNQFAQKLESVKNK 89
K DA A K+E +++E E+R +K+ +E +K + L++ L+ ++N
Sbjct: 124 KQDALLQALKDEANHKKEREKREVKQ----------EEEIKDINAQLSKIRDSLKLIQNM 173
Query: 90 TLDLQIPKQDGVDEKAYQEWYAQIYQI 116
D + P + ++ +A+IY++
Sbjct: 174 FWDEKNPNSVNIPQE-----FAEIYKL 195
>ref|NP_223656.1| putative [Helicobacter pylori J99]
Length = 337
Score = 27.7 bits (60), Expect = 0.21
Identities = 15/67 (22%), Positives = 32/67 (47%)
Query: 16 EESLENIFSSLNDFQEKTDANAQKNEQKNEQEEEQRRLKEQQRLRKNQKNQEMLKGLQQN 75
+E E IF + + + K N E ++EE +++KE + K + + M ++++
Sbjct: 77 QEYREKIFECVEEEKHKQALNLINKEDTEDKEELAKKIKEIKEKAKVLRQKFMAFEMKEH 136
Query: 76 LNQFAQK 82
+F K
Sbjct: 137 SKEFPNK 143
>ref|NP_223625.1| putative [Helicobacter pylori J99]
Length = 362
Score = 27.3 bits (59), Expect = 0.27
Identities = 18/65 (27%), Positives = 32/65 (48%), Gaps = 4/65 (6%)
Query: 17 ESLENIFSSLND---FQEKTDANAQKNEQKNEQEEEQRRLKEQQRLRKNQKN-QEMLKGL 72
++L+++ S N +++ ANA + E ++ RRLKE + N QE+ K
Sbjct: 168 DNLKDMIKSYNKGSRWEKNEKANADAEKYYEEIQDRIRRLKESKIFDSQSSNDQELQKSA 227
Query: 73 QQNLN 77
NL+
Sbjct: 228 NSNLD 232
>ref|NP_223614.1| putative [Helicobacter pylori J99]
Length = 230
Score = 26.9 bits (58), Expect = 0.36
Identities = 23/109 (21%), Positives = 49/109 (44%), Gaps = 18/109 (16%)
Query: 15 QEESLENIFSSLNDFQEKTDANAQKNEQKNEQEEEQRRLKEQQRL--------------- 59
+EE+ N SLND + + + ++ + +EE R +E +++
Sbjct: 105 KEEADNNYQESLNDEKLQNNLREWRDLKNTPEEENYREFEEIKKMVLYFRDWCMFRLDWY 164
Query: 60 RKNQKNQEMLKGLQQNLNQFAQKLESVKNKTLDLQIPKQDGVDEKAYQE 108
+ Q+ + + L N N+ Q S+KN ++ + + ++EK YQ+
Sbjct: 165 KLRQEEIQKHRDLMDNDNRLLQLDYSLKNLSI---LKRFKEINEKNYQD 210
>ref|NP_222772.1| putative [Helicobacter pylori J99]
Length = 220
Score = 26.9 bits (58), Expect = 0.36
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Query: 30 QEKTDANAQKNEQKNEQE----EEQRRLKEQQRLRKNQKN 65
+EKT+ Q NE KN ++ E+ L+E++ L K+++N
Sbjct: 65 KEKTELQKQVNELKNSKQVLENEKADWLREKENLTKDREN 104
Score = 22.7 bits (47), Expect = 6.7
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 8/72 (11%)
Query: 30 QEKTDANAQKNEQKNEQ---EEEQRRLKEQQRLRKNQKNQEMLKGLQQNLNQFAQKLESV 86
+EKT++ Q NE KN + E E+ L + K K L + + + +
Sbjct: 135 KEKTESQKQVNELKNSKQVLENEKADLTNENTKLKTDKTD-----LTEKNQRLTTEKTEL 189
Query: 87 KNKTLDLQIPKQ 98
NK L K+
Sbjct: 190 NNKITGLATEKE 201
>ref|NP_224039.1| putative histidine and glutamine-rich metal-binding protein
[Helicobacter pylori J99]
Length = 77
Score = 26.6 bits (57), Expect = 0.47
Identities = 8/32 (25%), Positives = 24/32 (75%)
Query: 36 NAQKNEQKNEQEEEQRRLKEQQRLRKNQKNQE 67
+A++ +++ Q+++Q++ +QQ+ + Q+NQ+
Sbjct: 45 HAEQQAEQHAQQQQQQQAHQQQQQKAQQQNQQ 76
Score = 23.1 bits (48), Expect = 5.1
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 41 EQKNEQEEEQRRLKEQQRLRKNQKNQEMLKGLQQN 75
+Q EQ+ EQ ++QQ+ Q+ Q K QQN
Sbjct: 43 QQHAEQQAEQHAQQQQQQQAHQQQQQ---KAQQQN 74
>ref|NP_223642.1| putative [Helicobacter pylori J99]
Length = 195
Score = 26.2 bits (56), Expect = 0.61
Identities = 21/92 (22%), Positives = 43/92 (45%), Gaps = 1/92 (1%)
Query: 13 KEQEESLENIFSSLNDFQEKTDANAQKNEQKNEQEEEQRRLKEQQRLRKNQKNQEMLKGL 72
++ + SL+N +S T + +QK EQ+R Q N++N E+ K
Sbjct: 81 RDYDPSLDNDENSSELLDAFTSSLENLEKQKINPIREQKRESGWQNNEDNKENSELEKAF 140
Query: 73 QQNLNQFAQKLESVKNKTLDLQIPKQDGVDEK 104
+++L+ F+Q +K + K++ ++ K
Sbjct: 141 KKDLS-FSQSNPIPLDKKETSKEEKEEELESK 171
Score = 25.8 bits (55), Expect = 0.79
Identities = 15/47 (31%), Positives = 21/47 (43%), Gaps = 1/47 (2%)
Query: 11 DPKEQEESLENIFSSLNDFQEKTDANAQKNEQKNEQEEEQRRLKEQQ 57
D KE E LE F F + K E E++EE+ KE++
Sbjct: 129 DNKENSE-LEKAFKKDLSFSQSNPIPLDKKETSKEEKEEELESKEKE 174
>ref|NP_223404.1| putative [Helicobacter pylori J99]
Length = 268
Score = 26.2 bits (56), Expect = 0.61
Identities = 21/81 (25%), Positives = 37/81 (44%), Gaps = 4/81 (4%)
Query: 37 AQKNEQKNEQEEEQRRLKEQQRLRKNQKNQEMLKGLQQNLNQFAQKLESVKNKTLDLQIP 96
A K N E ++ L++ +KN LQ + ++LE++K K L+IP
Sbjct: 66 ALKEIDPNYSLEPLQKTLGADGLKELKKNLPFFYSLQLSTFPTQERLENIKEKL--LKIP 123
Query: 97 KQDGVDEKAYQEWYAQIYQIL 117
V+ + + Y Q+Y +L
Sbjct: 124 GVQKVE--VFAKTYMQVYDLL 142
>ref|NP_223610.1| putative [Helicobacter pylori J99]
Length = 267
Score = 25.8 bits (55), Expect = 0.79
Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 5/104 (4%)
Query: 10 IDPKEQEESLENIFSSLNDFQE--KTDANAQKNEQKNEQEEEQRRLKEQQRLRKNQKNQE 67
I K E E SLN ++ K +N E +N Q E + + ++Q+ L+K E
Sbjct: 77 IQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKHKSEKQEVLKKEMLELE 136
Query: 68 MLKGLQQNLNQFAQKLESVKNKTLDLQIPKQDGVDEKAYQEWYA 111
L +NL + +++++K +T + K++ + EK + Y+
Sbjct: 137 KLALELENLVE--NEVKNIK-ETQQIIFKKKEELVEKTEPKIYS 177
>ref|NP_223561.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 363
Score = 25.4 bits (54), Expect = 1.0
Identities = 15/68 (22%), Positives = 33/68 (48%)
Query: 11 DPKEQEESLENIFSSLNDFQEKTDANAQKNEQKNEQEEEQRRLKEQQRLRKNQKNQEMLK 70
D K Q+ S + Q+ + QK + Q+ ++++ EQ+ L + +Q+ K
Sbjct: 280 DQKPQKLSEQKALEQKISEQKPQEPLDQKLSDQKPQKPLEQKISEQKPLDQKLSDQKPQK 339
Query: 71 GLQQNLNQ 78
L+Q +++
Sbjct: 340 PLEQKISE 347
>ref|NP_223365.1| putative [Helicobacter pylori J99]
Length = 114
Score = 25.0 bits (53), Expect = 1.4
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 44 NEQEEEQRRLKEQQRLRKNQKNQEMLKGLQQN 75
N E+++R L E+Q++ KN+ +E K +N
Sbjct: 74 NTLEDQKRLLLEEQQILKNELEKERFKYYIEN 105
>ref|NP_223111.1| RNA POLYMERASE SIGMA FACTOR (sigma 28) [Helicobacter pylori J99]
Length = 255
Score = 25.0 bits (53), Expect = 1.4
Identities = 17/75 (22%), Positives = 39/75 (51%), Gaps = 1/75 (1%)
Query: 9 FIDPKEQEESLENIFSSLNDFQEKT-DANAQKNEQKNEQEEEQRRLKEQQRLRKNQKNQE 67
+++ +E S E++ +L + EK +A + +EQ EQ + + + +E
Sbjct: 132 YLNEHGKEPSDEHLAEALGENIEKIREAKTASDIYALVPIDEQFNAIEQDEITQKIEAEE 191
Query: 68 MLKGLQQNLNQFAQK 82
+L+ +Q+ LNQ +++
Sbjct: 192 LLEHIQKVLNQMSER 206
>ref|NP_223574.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2399
Score = 24.6 bits (52), Expect = 1.8
Identities = 15/39 (38%), Positives = 20/39 (50%), Gaps = 3/39 (7%)
Query: 11 DPKEQEESLENI---FSSLNDFQEKTDANAQKNEQKNEQ 46
D K E+ L I +S F E+ AQK EQ++EQ
Sbjct: 502 DEKALEKDLAQIKQLANSTTGFNEQAFTQAQKQEQQDEQ 540
>ref|NP_223322.1| putative [Helicobacter pylori J99]
Length = 413
Score = 24.6 bits (52), Expect = 1.8
Identities = 11/55 (20%), Positives = 29/55 (52%)
Query: 4 DKEGDFIDPKEQEESLENIFSSLNDFQEKTDANAQKNEQKNEQEEEQRRLKEQQR 58
D + + ++ ++QE SL+ +E + + + KN++E+++ + K + R
Sbjct: 23 DSKVEALEGRKQESSLDKKIRQELKSKELKNKELKNKDLKNKEEKKETKAKRKPR 77
>ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99]
Length = 856
Score = 24.6 bits (52), Expect = 1.8
Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Query: 13 KEQEESLENIFSSLNDF-QEKTDANAQKNEQKNEQEEEQRRLKEQQRLRKNQKNQEMLKG 71
+ + ++ I L+D +EK AQ +K +E R E + L+K + +
Sbjct: 432 ESNHKRMQEILKELSDLKEEKIQLEAQFENEKEVFKEISRLKMEMEGLKKEAERFKRNGD 491
Query: 72 LQQNLNQFAQKLESVKNKTLDLQ 94
QQ K+ + K +LQ
Sbjct: 492 YQQAAEIEYSKIPEKEKKEKELQ 514
>ref|NP_223306.1| GLUTAMYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 439
Score = 24.3 bits (51), Expect = 2.3
Identities = 9/22 (40%), Positives = 14/22 (62%)
Query: 154 KDYNKSVMTLLNDLKKVDFPPY 175
+D+ + +TL N LK +DF Y
Sbjct: 361 EDFKERCLTLFNALKSMDFQAY 382
>ref|NP_223040.1| putative [Helicobacter pylori J99]
Length = 293
Score = 24.3 bits (51), Expect = 2.3
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 18/87 (20%)
Query: 48 EEQRRLKEQQRLRKNQKNQEMLKGLQQNLNQFAQKLESVKNKTLDLQIPKQDGVDEKAYQ 107
++QR + QQ +RK+Q Q +++ + N+ +KL + K GV +K Q
Sbjct: 36 DKQRLKQNQQTVRKSQIIQGVVRLIYFKPNEKQEKL---------VFEAKDFGVFDKPAQ 86
Query: 108 EWYAQIYQILYKGWKGVFYHKASVSAL 134
+Y KG FYH++ + +
Sbjct: 87 ---------IYTHPKGYFYHESLLDCI 104
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 23.9 bits (50), Expect = 3.0
Identities = 18/86 (20%), Positives = 41/86 (46%), Gaps = 11/86 (12%)
Query: 13 KEQEESLENIFSSLNDFQEKTDANAQK------NEQKNEQEEEQRRL----KEQQRLRKN 62
K+ E + N ++ D +++ + ++ NE K++ +E ++ K L K
Sbjct: 398 KKANEQITNHNETIKDIEKQKKSCKEQTWKFLINEFKSDIQEYNKKYCGLEKGINNLEKE 457
Query: 63 -QKNQEMLKGLQQNLNQFAQKLESVK 87
+NQE +K L+ + + + + S+K
Sbjct: 458 ISENQEKVKKLENEIKELEKNMVSIK 483
>ref|NP_223219.1| putative [Helicobacter pylori J99]
Length = 321
Score = 23.9 bits (50), Expect = 3.0
Identities = 12/45 (26%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Query: 11 DPKEQEESLE-----NIFSSLNDFQEKTDANAQKNEQKNEQEEEQ 50
+ +EQE +++ N F+ N +EK K E+K++++++Q
Sbjct: 177 EEREQERAIKPDTKNNSFNETNPTEEKKLEPTPKLEEKHKEQDKQ 221
>ref|NP_223180.1| putative [Helicobacter pylori J99]
Length = 706
Score = 23.9 bits (50), Expect = 3.0
Identities = 8/29 (27%), Positives = 21/29 (71%)
Query: 31 EKTDANAQKNEQKNEQEEEQRRLKEQQRL 59
E+ +K E+K ++E+E+ +LK+++++
Sbjct: 554 EEYKPKKEKKEKKEKKEKEEYKLKKEKKV 582
Score = 23.1 bits (48), Expect = 5.1
Identities = 7/23 (30%), Positives = 19/23 (82%)
Query: 42 QKNEQEEEQRRLKEQQRLRKNQK 64
+K ++E+++++ KE+ +L+K +K
Sbjct: 559 KKEKKEKKEKKEKEEYKLKKEKK 581
>ref|NP_223029.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 180
Score = 23.9 bits (50), Expect = 3.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 137 IAKDGEFDYTILSYSDFKDYN 157
I+KD EF +L Y D K YN
Sbjct: 153 ISKDKEFIDVLLYYKDKKGYN 173
>ref|NP_223682.1| putative [Helicobacter pylori J99]
Length = 261
Score = 23.5 bits (49), Expect = 3.9
Identities = 11/23 (47%), Positives = 15/23 (64%)
Query: 12 PKEQEESLENIFSSLNDFQEKTD 34
PKEQ ++ + SL DF +KTD
Sbjct: 215 PKEQRKTDFILGQSLEDFLDKTD 237
>ref|NP_223635.1| DNA transfer protein [Helicobacter pylori J99]
Length = 475
Score = 23.5 bits (49), Expect = 3.9
Identities = 15/80 (18%), Positives = 33/80 (40%)
Query: 7 GDFIDPKEQEESLENIFSSLNDFQEKTDANAQKNEQKNEQEEEQRRLKEQQRLRKNQKNQ 66
G +I+P ++S EN N + + ++ + + + +++ +QKNQ
Sbjct: 321 GFYINPFSLKDSEENRQFLANWIKFMLNIDSDNQQDNKASQSIDKVIRDTYNYMGDQKNQ 380
Query: 67 EMLKGLQQNLNQFAQKLESV 86
L + +NL Q +
Sbjct: 381 INLLEIAKNLGSSEQDFNEI 400
>ref|NP_223502.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 875
Score = 23.5 bits (49), Expect = 3.9
Identities = 22/97 (22%), Positives = 45/97 (45%), Gaps = 5/97 (5%)
Query: 13 KEQEESLENIFSSLNDFQEKTDA---NAQKNEQKNEQEEEQRRLKEQQ--RLRKNQKNQE 67
+++EE +NI +EK + +A + N E + E++ R KN + QE
Sbjct: 779 QKREEEFQNIIEENRLNEEKAYSFMQHAFSGGEINFSGTEFPEIIEEKVSRFDKNSRYQE 838
Query: 68 MLKGLQQNLNQFAQKLESVKNKTLDLQIPKQDGVDEK 104
+ + + +L++F + + + K+D V+EK
Sbjct: 839 VKERVAASLSRFFHRFCDLTSAIFKKNEIKKDEVNEK 875
>ref|NP_223147.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 371
Score = 23.5 bits (49), Expect = 3.9
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Query: 13 KEQEESLENIFSSLNDFQEKTDANAQKNEQKNEQEEEQRRLKEQQRLRKNQKNQEMLKGL 72
K + ++ N F+ +N NA KN K E+Q Q +N + ML G
Sbjct: 73 KNEITNMPNTFNYIN--------NALKNNAKLTPTEKQAETYYLQSTLQNIEKIVMLSGG 124
Query: 73 QQNLNQFAQKLESVK 87
+ + AQ LE ++
Sbjct: 125 VASNPKLAQALEKMQ 139
>ref|NP_223054.1| septum formation protein [Helicobacter pylori J99]
Length = 844
Score = 23.5 bits (49), Expect = 3.9
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 23 FSSLNDFQEKTDANAQKNEQKNEQEEEQRRLKE 55
FS + E T +++QK E N++E+E LKE
Sbjct: 169 FSLKKEGFENTPSDSQKKETNNDKEKE--NLKE 199
>ref|NP_222871.1| DELTA-AMINOLEVULINIC ACID DEHYDRATASE [Helicobacter pylori J99]
Length = 323
Score = 23.5 bits (49), Expect = 3.9
Identities = 15/72 (20%), Positives = 36/72 (49%), Gaps = 1/72 (1%)
Query: 54 KEQQRLRKNQKNQEMLKGLQQNLNQFAQKLESVKNKT-LDLQIPKQDGVDEKAYQEWYAQ 112
K +RLR ++ + M++ + N+N F L +++ + + +I GV + + + +
Sbjct: 3 KRLRRLRSSENLRAMVRETRLNINDFIAPLFVIESDSGIKNEISSMPGVYQMSIEPLLKE 62
Query: 113 IYQILYKGWKGV 124
+++ G K V
Sbjct: 63 CEELVGLGIKAV 74
>ref|NP_223990.1| putative [Helicobacter pylori J99]
Length = 1164
Score = 23.1 bits (48), Expect = 5.1
Identities = 14/57 (24%), Positives = 22/57 (38%)
Query: 2 PTDKEGDFIDPKEQEESLENIFSSLNDFQEKTDANAQKNEQKNEQEEEQRRLKEQQR 58
P D + D K+ E + EN F + T+ +KN R+LK +
Sbjct: 765 PFDIRKVYYDTKKLERARENTFKHMLPPPPPTNPKTPNQTRKNVALNTPRQLKNNDK 821
>ref|NP_223618.1| putative [Helicobacter pylori J99]
Length = 340
Score = 23.1 bits (48), Expect = 5.1
Identities = 9/29 (31%), Positives = 20/29 (68%)
Query: 4 DKEGDFIDPKEQEESLENIFSSLNDFQEK 32
+KE D ++Q++ LEN ++L+D +++
Sbjct: 307 EKEKHLNDLEDQKQILENKINALSDLEQQ 335
>ref|NP_223258.1| putative [Helicobacter pylori J99]
Length = 591
Score = 23.1 bits (48), Expect = 5.1
Identities = 14/57 (24%), Positives = 23/57 (39%)
Query: 127 HKASVSALIMIAKDGEFDYTILSYSDFKDYNKSVMTLLNDLKKVDFPPYPGGSMISI 183
HK ++ L+ +A+DG I + Y + + LKK F G + I
Sbjct: 272 HKRNIDTLVFVARDGYLLQKIFNILYPNSYKTTYVYAPRILKKAVFLEVVEGESLEI 328
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 23.1 bits (48), Expect = 5.1
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 14/91 (15%)
Query: 13 KEQEESLENIFSSLNDFQEKTDANAQKNEQKNEQEEEQRRLKEQQRLRKNQKNQEMLKGL 72
K++E + N F + E T ++ + K +Q+L++ QK++E L L
Sbjct: 122 KKKEIEIVNTFENQTPLVENTPKAVSHSQIE----------KAKQKLQEIQKSREALNKL 171
Query: 73 QQ---NLNQFAQKLESVKNKTLDL-QIPKQD 99
Q N A +V N ++ ++ KQ+
Sbjct: 172 TQSNTNTTNNANSASNVSNAKKEISEVKKQE 202
Score = 22.3 bits (46), Expect = 8.8
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 34 DANAQKNEQKNEQEEEQRRLKEQQRLRKNQKNQEM 68
D + Q N K E+EE++ R R+R +KN M
Sbjct: 311 DLHEQDNLNK-EEEEKEARQNINDRVRVQRKNPWM 344
>ref|NP_222776.1| putative [Helicobacter pylori J99]
Length = 522
Score = 23.1 bits (48), Expect = 5.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 18 SLENIFSSLNDFQEKTDANAQKNEQKNEQEE 48
+L+ I S L F E DAN + ++NE E
Sbjct: 298 NLQTIASQLRPFLENLDANIIEAIEENENFE 328
>ref|NP_224176.1| TRANSCRIPTION-REPAIR COUPLING FACTOR [Helicobacter pylori J99]
Length = 1001
Score = 22.7 bits (47), Expect = 6.7
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 143 FDYTILSYSDFKDYN--KSVMTLLN-DLKKVDFP 173
FDY IL+ DFK+ K V++ ++K V FP
Sbjct: 14 FDYQILACKDFKESELAKEVISYFKPNIKAVLFP 47
>ref|NP_223562.1| putative FLAGELLAR BASAL-BODY/ROD/HOOKPROTEIN [Helicobacter pylori
J99]
Length = 605
Score = 22.7 bits (47), Expect = 6.7
Identities = 17/44 (38%), Positives = 22/44 (49%), Gaps = 6/44 (13%)
Query: 5 KEGDFIDPKEQEESLENIFSSLNDFQ----EKT--DANAQKNEQ 42
K+ DF+ E EN F +L D Q EKT D N K+E+
Sbjct: 258 KKEDFVFTYGDAEKGENQFKTLGDLQKLLKEKTGLDLNLIKSEK 301
>ref|NP_223222.1| ACETYL-COENZYME A CARBOXYLASE SUBUNIT A [Helicobacter pylori J99]
Length = 312
Score = 22.7 bits (47), Expect = 6.7
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 4 DKEGDFIDPKEQEESLENIFSSLNDFQE 31
D++ I K ++ +++I+S+L DFQ+
Sbjct: 26 DEDAKEILEKRLDKEVKSIYSNLTDFQK 53
>ref|NP_224183.1| FLAGELLAR HOOK-BASAL BODY COMPLEX PROTEIN [Helicobacter pylori
J99]
Length = 109
Score = 22.3 bits (46), Expect = 8.8
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 13/77 (16%)
Query: 17 ESLENIFSSLNDFQEKTDANAQKNEQKNEQEEEQRRLKEQQRLRKNQKNQEMLKGLQQNL 76
+++ N S L+ F E N K E+ +E QK E K L+Q++
Sbjct: 2 QAIHNDKSLLSPFSELNTDNRTKREESGSTFKE-------------QKGGEFSKLLKQSI 48
Query: 77 NQFAQKLESVKNKTLDL 93
N+ E D+
Sbjct: 49 NELNNTQEQSDKALADM 65
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 22.3 bits (46), Expect = 8.8
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 11 DPKE-QEESLENIFSSLNDFQEKTDANAQKNEQKNE 45
+P+E ++E++EN +N E + QKNE
Sbjct: 16 NPQEPKKETIENFEKEINSLLENVPRQDDEEFQKNE 51
>ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 779
Score = 22.3 bits (46), Expect = 8.8
Identities = 25/121 (20%), Positives = 49/121 (39%), Gaps = 26/121 (21%)
Query: 53 LKEQQRLRKNQKNQEMLKGLQQNLNQFAQKLESVKNKTLDLQIPKQDGVDEKAYQEWYAQ 112
L + +R+ +++KNQE +NL+ LDL + ++
Sbjct: 240 LFKSERIEESKKNQERFNAFLENLS------------FLDL-------------ENFFNH 274
Query: 113 IYQILYKGWKGVFYHKASVSALIMIAKDGEFDYTILSYSDFKDYNKSVMTLLNDLKKVDF 172
+K K F + L+ + ++ + ++ ++ K+ KS M LLN L+ D
Sbjct: 275 SRNAFFKAAKSFFDEQNHTPNLVALLQNKFKESVQINTNNEKELEKS-MLLLNSLEDRDN 333
Query: 173 P 173
P
Sbjct: 334 P 334
>ref|NP_223895.1| RIBOSOME RECYCLING FACTOR (RIBOSOME RELEASING FACTOR) (RRF)
[Helicobacter pylori J99]
Length = 185
Score = 22.3 bits (46), Expect = 8.8
Identities = 13/55 (23%), Positives = 26/55 (46%)
Query: 49 EQRRLKEQQRLRKNQKNQEMLKGLQQNLNQFAQKLESVKNKTLDLQIPKQDGVDE 103
EQR+L + +K + ++ +Q+ N +KLE K + D Q+ + +
Sbjct: 108 EQRKLIAKDAKAMGEKAKVAVRNTRQDANNKVKKLEKDKEISEDESKKAQEQIQK 162
>ref|NP_223422.1| putative [Helicobacter pylori J99]
Length = 182
Score = 22.3 bits (46), Expect = 8.8
Identities = 10/43 (23%), Positives = 24/43 (55%)
Query: 49 EQRRLKEQQRLRKNQKNQEMLKGLQQNLNQFAQKLESVKNKTL 91
++ +L Q+R+ ++ +E ++ L+ NQF + E + T+
Sbjct: 73 KEAKLARQRRIEIEKECRESIRQLEMYQNQFNEVFERYFHGTI 115
>ref|NP_223088.1| putative [Helicobacter pylori J99]
Length = 289
Score = 22.3 bits (46), Expect = 8.8
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 12/88 (13%)
Query: 14 EQEESLENIFSSLNDFQEKTDANA-----QKNEQKNEQEEEQRRLKE------QQRLRKN 62
E+ + EN+ + N +E T +A +K Q E +EE K+ + + K
Sbjct: 26 EENITKENM-TETNTTEENTPKDAPILLEEKRAQTLELKEENEVAKKIDEKSLLEEIHKK 84
Query: 63 QKNQEMLKGLQQNLNQFAQKLESVKNKT 90
++ MLKG N+ + KNK+
Sbjct: 85 KRQLYMLKGELHEKNESILFQQMAKNKS 112
>ref|NP_223039.1| putative [Helicobacter pylori J99]
Length = 186
Score = 22.3 bits (46), Expect = 8.8
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 17 ESLENIFSSL-----NDFQEKTDANAQKNEQKNEQEEEQRRLKEQQRLR 60
E L NI + + K D+N + ++ K E+ LK+Q+ L+
Sbjct: 131 EKLSNIAEEIISKKQEESHHKEDSNDENHKDKLSNITEEMILKKQEELK 179
>ref|NP_222738.1| putative [Helicobacter pylori J99]
Length = 469
Score = 22.3 bits (46), Expect = 8.8
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 36 NAQKNEQKNEQEEEQRRLKE--QQRLRKNQKNQEMLKGLQQNLNQFAQKLESVKNKT 90
+A+ Q N E QRR KE + ++K K + K N+ + ++ + N T
Sbjct: 136 SAKARVQFNRANERQRRAKEFYYEEVQKAIKEIDSSKKHNINMERSRAEVSEILNNT 192
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.311 0.130 0.357
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 224,281
Number of Sequences: 1491
Number of extensions: 11344
Number of successful extensions: 144
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 41
Number of HSP's gapped (non-prelim): 91
length of query: 193
length of database: 494,079
effective HSP length: 73
effective length of query: 120
effective length of database: 385,236
effective search space: 46228320
effective search space used: 46228320
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 46 (22.3 bits)