BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645742|ref|NP_207919.1| hypothetical protein
[Helicobacter pylori 26695]
(84 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223773.1| putative [Helicobacter pylori J99] 116 7e-29
ref|NP_223684.1| METHIONYL-TRNA SYNTHETASE [Helicobacter py... 28 0.044
ref|NP_224063.1| putative thiophene/furan oxidation protein... 27 0.098
ref|NP_223555.1| Hydrogenase expression/formation protein [... 26 0.17
ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99] 26 0.17
ref|NP_222931.1| putative PEPTIDE METHIONINE SULFOXIDE REDU... 26 0.17
ref|NP_223189.1| cag island protein [Helicobacter pylori J99] 25 0.22
ref|NP_223436.1| putative [Helicobacter pylori J99] 25 0.28
ref|NP_223814.1| AMINO ACID ABC TRANSPORTER, PERMEASE PROTE... 25 0.37
ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [He... 24 0.63
ref|NP_223506.1| putative [Helicobacter pylori J99] 23 0.83
ref|NP_223139.1| putative [Helicobacter pylori J99] 23 0.83
ref|NP_222988.1| putative [Helicobacter pylori J99] 23 0.83
ref|NP_223910.1| NADH oxidoreductase I [Helicobacter pylori... 23 1.1
ref|NP_223659.1| putative [Helicobacter pylori J99] 23 1.1
ref|NP_223770.1| putative [Helicobacter pylori J99] 23 1.4
ref|NP_223345.1| FERROUS IRON TRANSPORT PROTEIN B [Helicoba... 23 1.4
ref|NP_223350.1| putative HYDANTOIN UTILIZATION [Helicobact... 22 1.8
ref|NP_223895.1| RIBOSOME RECYCLING FACTOR (RIBOSOME RELEAS... 22 2.4
ref|NP_223180.1| putative [Helicobacter pylori J99] 22 2.4
ref|NP_223060.1| ASPARTATE CARBAMOYLTRANSFERASE CATALYTIC C... 22 2.4
ref|NP_223965.1| putative [Helicobacter pylori J99] 22 3.1
ref|NP_223951.1| 30S RIBOSOMAL PROTEIN S3 [Helicobacter pyl... 22 3.1
ref|NP_223258.1| putative [Helicobacter pylori J99] 22 3.1
ref|NP_224097.1| putative [Helicobacter pylori J99] 21 4.1
ref|NP_223849.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 21 4.1
ref|NP_223743.1| PHOSPHOGLUCONATE DEHYDRATASE [Helicobacter... 21 4.1
ref|NP_223674.1| putative [Helicobacter pylori J99] 21 4.1
ref|NP_223516.1| putative [Helicobacter pylori J99] 21 4.1
ref|NP_223386.1| putative [Helicobacter pylori J99] 21 4.1
ref|NP_223298.1| putative [Helicobacter pylori J99] 21 4.1
ref|NP_223249.1| putative FLAGELLAR MOTOR SWITCH PROTEIN [... 21 4.1
ref|NP_223195.1| cag island protein [Helicobacter pylori J99] 21 4.1
ref|NP_223191.1| cag island protein, DNA transfer protein [... 21 4.1
ref|NP_223141.1| GLUTATHIONE-REGULATED POTASSIUM-EFFLUX SYS... 21 4.1
ref|NP_224176.1| TRANSCRIPTION-REPAIR COUPLING FACTOR [Heli... 21 5.4
ref|NP_223569.1| putative IRON-REGULATED OUTER MEMBRANE PRO... 21 5.4
ref|NP_223500.1| PHOSPHOMETHYLPYRIMIDINE KINASE [Helicobact... 21 5.4
ref|NP_223243.1| putative [Helicobacter pylori J99] 21 5.4
ref|NP_223102.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobact... 21 5.4
ref|NP_222942.1| putative [Helicobacter pylori J99] 21 5.4
ref|NP_222815.1| putative [Helicobacter pylori J99] 21 5.4
ref|NP_223664.1| putative [Helicobacter pylori J99] 20 7.0
ref|NP_223536.1| CYSTEINYL-TRNA SYNTHETASE [Helicobacter py... 20 7.0
ref|NP_223019.1| putative [Helicobacter pylori J99] 20 7.0
ref|NP_222842.1| L-serine transporter, similar to E. coli n... 20 7.0
ref|NP_224160.1| TYPE II RESTRICTION ENZYME [Helicobacter p... 20 9.2
ref|NP_223771.1| putative Outer membrane protein [Helicobac... 20 9.2
ref|NP_223560.1| putative [Helicobacter pylori J99] 20 9.2
ref|NP_223546.1| putative [Helicobacter pylori J99] 20 9.2
ref|NP_223252.1| putative [Helicobacter pylori J99] 20 9.2
ref|NP_223199.1| cag island protein [Helicobacter pylori J99] 20 9.2
ref|NP_223173.1| putative [Helicobacter pylori J99] 20 9.2
ref|NP_223113.1| FLAGELLAR MOTOR SWITCH PROTEIN [Helicobact... 20 9.2
ref|NP_223108.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 20 9.2
ref|NP_223048.1| GTP-BINDING PROTEIN [Helicobacter pylori J99] 20 9.2
>ref|NP_223773.1| putative [Helicobacter pylori J99]
Length = 263
Score = 116 bits (291), Expect = 7e-29
Identities = 62/75 (82%), Positives = 68/75 (90%), Gaps = 1/75 (1%)
Query: 1 MSKSAIFVVSGFLAFLLYALLLYGLLLERHNKEAEKILLDLGKKNEQVIDLNLEDLPSDE 60
MSKSAIFV+SGFLAFLLYALLLYGLLLERHNKEAEKILLDL KK+EQ IDLNLEDLPS E
Sbjct: 1 MSKSAIFVLSGFLAFLLYALLLYGLLLERHNKEAEKILLDLNKKDEQAIDLNLEDLPS-E 59
Query: 61 KKDEKIAEKAEEKKD 75
KK+EKI + E++ D
Sbjct: 60 KKNEKIEKVTEKQGD 74
>ref|NP_223684.1| METHIONYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 656
Score = 27.7 bits (60), Expect = 0.044
Identities = 13/32 (40%), Positives = 19/32 (58%)
Query: 53 LEDLPSDEKKDEKIAEKAEEKKDEKVVEKNAN 84
+E + EK +E +AEKAE+K+ EK N
Sbjct: 518 IEKIEKIEKGEEALAEKAEKKEKEKAPPTQEN 549
>ref|NP_224063.1| putative thiophene/furan oxidation protein [Helicobacter pylori
J99]
Length = 461
Score = 26.6 bits (57), Expect = 0.098
Identities = 14/32 (43%), Positives = 20/32 (61%)
Query: 32 KEAEKILLDLGKKNEQVIDLNLEDLPSDEKKD 63
+EA LL L +E +ID + ED+PSD K+
Sbjct: 165 EEARNNLLKLLASSEVLIDYSEEDIPSDFLKE 196
>ref|NP_223555.1| Hydrogenase expression/formation protein [Helicobacter pylori
J99]
Length = 242
Score = 25.8 bits (55), Expect = 0.17
Identities = 13/29 (44%), Positives = 17/29 (57%)
Query: 52 NLEDLPSDEKKDEKIAEKAEEKKDEKVVE 80
+L++ P+ KKD KI EK K D K E
Sbjct: 8 SLQNNPNLSKKDIKIVEKILSKNDIKAAE 36
>ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99]
Length = 856
Score = 25.8 bits (55), Expect = 0.17
Identities = 16/60 (26%), Positives = 30/60 (49%), Gaps = 8/60 (13%)
Query: 27 LERHNKEAEKILLDLGKKN---EQVIDLNLEDLPSDEKKDEKIAEKAEEKKDEKVVEKNA 83
+E KEAE+ K+N +Q ++ +P EKK++++ K E + + +NA
Sbjct: 476 MEGLKKEAERF-----KRNGDYQQAAEIEYSKIPEKEKKEKELQHKWETMQQNGALLQNA 530
Score = 20.0 bits (40), Expect = 9.2
Identities = 13/51 (25%), Positives = 26/51 (50%)
Query: 25 LLLERHNKEAEKILLDLGKKNEQVIDLNLEDLPSDEKKDEKIAEKAEEKKD 75
+L E + + EKI L+ +NE+ + + L + + +K AE+ + D
Sbjct: 441 ILKELSDLKEEKIQLEAQFENEKEVFKEISRLKMEMEGLKKEAERFKRNGD 491
>ref|NP_222931.1| putative PEPTIDE METHIONINE SULFOXIDE REDUCTASE [Helicobacter
pylori J99]
Length = 359
Score = 25.8 bits (55), Expect = 0.17
Identities = 14/43 (32%), Positives = 22/43 (50%)
Query: 39 LDLGKKNEQVIDLNLEDLPSDEKKDEKIAEKAEEKKDEKVVEK 81
+DL K +E ++D + PSDE +K+ + E K EK
Sbjct: 186 IDLKKADEVIVDDDKYTKPSDEVLKKKLTKLQYEVTQNKHTEK 228
>ref|NP_223189.1| cag island protein [Helicobacter pylori J99]
Length = 481
Score = 25.4 bits (54), Expect = 0.22
Identities = 17/66 (25%), Positives = 32/66 (47%), Gaps = 1/66 (1%)
Query: 16 LLYALLLYGLLLERHNKEAEKILLDLGKKNEQVIDLNLEDLPSDEKKDEKIAE-KAEEKK 74
L+ L+ L+ + +K+L + K+ ++ L+DL + +K AE K + K
Sbjct: 285 LIEELIANSQLIANEEEREKKLLAEKEKQETELAKYKLKDLENQKKLKALEAELKKKNTK 344
Query: 75 DEKVVE 80
+VVE
Sbjct: 345 KPRVVE 350
>ref|NP_223436.1| putative [Helicobacter pylori J99]
Length = 429
Score = 25.0 bits (53), Expect = 0.28
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 50 DLNLEDLPSDEKKDEKIAEKAEEKKDEK 77
D N++ SDE+ EK+ E +E + EK
Sbjct: 140 DFNIQVFDSDEESPEKLEETYKEIEKEK 167
>ref|NP_223814.1| AMINO ACID ABC TRANSPORTER, PERMEASE PROTEIN [Helicobacter pylori
J99]
Length = 223
Score = 24.6 bits (52), Expect = 0.37
Identities = 19/60 (31%), Positives = 32/60 (52%), Gaps = 3/60 (5%)
Query: 2 SKSAIFVV---SGFLAFLLYALLLYGLLLERHNKEAEKILLDLGKKNEQVIDLNLEDLPS 58
SK IF V FL+ L +L L+ +++ + +DL K +Q+I+LNL +P+
Sbjct: 128 SKKVIFNVIFPQSFLSLLPSSLNLFTRMIKTTALVSLIGAVDLLKVGQQIIELNLLRMPN 187
>ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [Helicobacter pylori J99]
Length = 681
Score = 23.9 bits (50), Expect = 0.63
Identities = 14/67 (20%), Positives = 31/67 (45%)
Query: 15 FLLYALLLYGLLLERHNKEAEKILLDLGKKNEQVIDLNLEDLPSDEKKDEKIAEKAEEKK 74
+L+ + Y L + +++ +E + +D S+E ++ + +K +K
Sbjct: 211 YLIDFIYAYKDALINRERRVKELFRSFDDDDENSVSDPKKDDDSEEDEENEERKKVVSEK 270
Query: 75 DEKVVEK 81
D+K VEK
Sbjct: 271 DKKRVEK 277
>ref|NP_223506.1| putative [Helicobacter pylori J99]
Length = 313
Score = 23.5 bits (49), Expect = 0.83
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 24 GLLLERHNKEAEKILLDLGKKNEQVIDLNLEDLPSDEKKDEKIAE-KAEEKKDEKV 78
G L+ RH L+DL K+ + + DL +DE K + K +EK D V
Sbjct: 214 GYLVGRHIDTHNPQLMDLLKRLHASFGIGVIDLRTDEDKSAILLNAKHKEKIDYTV 269
>ref|NP_223139.1| putative [Helicobacter pylori J99]
Length = 162
Score = 23.5 bits (49), Expect = 0.83
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 43 KKNEQVIDLNLEDLPSDEKKDEKIAEKAEEKKDEK 77
+KNE ++ N D +K+E IA+ E KKDE+
Sbjct: 102 EKNENIVLFNRCDSLELFQKEEPIAQ--EPKKDER 134
>ref|NP_222988.1| putative [Helicobacter pylori J99]
Length = 478
Score = 23.5 bits (49), Expect = 0.83
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 58 SDEKKDEKIAEKAEEKKDEKVV 79
S ++ EK E EE KDEK++
Sbjct: 101 SVKRDSEKTLENNEENKDEKLI 122
>ref|NP_223910.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 612
Score = 23.1 bits (48), Expect = 1.1
Identities = 12/35 (34%), Positives = 21/35 (59%)
Query: 4 SAIFVVSGFLAFLLYALLLYGLLLERHNKEAEKIL 38
SA+F V F+A L + L+G + NK+ ++I+
Sbjct: 272 SAVFEVGYFIACLGAFVALFGASMALVNKDLKRIV 306
>ref|NP_223659.1| putative [Helicobacter pylori J99]
Length = 677
Score = 23.1 bits (48), Expect = 1.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 49 IDLNLEDLPSDEKKDEKIAEKAEEKKDEKVVEK 81
I L L+DL +EK E+I +E K ++K
Sbjct: 237 IKLQLQDLEKEEKALEQIKSPQDEWDLNKALQK 269
>ref|NP_223770.1| putative [Helicobacter pylori J99]
Length = 331
Score = 22.7 bits (47), Expect = 1.4
Identities = 13/39 (33%), Positives = 20/39 (50%)
Query: 27 LERHNKEAEKILLDLGKKNEQVIDLNLEDLPSDEKKDEK 65
L++ NKE ++L L + I L + L E+K EK
Sbjct: 127 LDKQNKEMSELLTKLSQDLVSQIALIQKALKEQEEKAEK 165
>ref|NP_223345.1| FERROUS IRON TRANSPORT PROTEIN B [Helicobacter pylori J99]
Length = 642
Score = 22.7 bits (47), Expect = 1.4
Identities = 15/46 (32%), Positives = 23/46 (49%)
Query: 6 IFVVSGFLAFLLYALLLYGLLLERHNKEAEKILLDLGKKNEQVIDL 51
IF+ GF+ + L G +++ +E KIL D K+N DL
Sbjct: 227 IFIFLGFMFIIFSLSFLIGGGVQKALEEGFKILSDSIKENVANEDL 272
>ref|NP_223350.1| putative HYDANTOIN UTILIZATION [Helicobacter pylori J99]
Length = 765
Score = 22.3 bits (46), Expect = 1.8
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 24 GLLLERHNKEAEKILLDLGKKNEQVIDLNLEDLPSDEKKDEKIAEKAEEKKDEKVV 79
G E HN E + KN + L + P+D ++ I+ ++ K+D++ +
Sbjct: 544 GYRFEAHNTNLENRI-----KNNASLPLGGDFNPTDRGYEKHISHASQVKRDKQCI 594
>ref|NP_223895.1| RIBOSOME RECYCLING FACTOR (RIBOSOME RELEASING FACTOR) (RRF)
[Helicobacter pylori J99]
Length = 185
Score = 21.9 bits (45), Expect = 2.4
Identities = 11/39 (28%), Positives = 24/39 (61%)
Query: 43 KKNEQVIDLNLEDLPSDEKKDEKIAEKAEEKKDEKVVEK 81
KK E+ +++ ++ +++ +KI ++A +K DE V K
Sbjct: 140 KKLEKDKEISEDESKKAQEQIQKITDEAIKKIDESVKNK 178
>ref|NP_223180.1| putative [Helicobacter pylori J99]
Length = 706
Score = 21.9 bits (45), Expect = 2.4
Identities = 11/27 (40%), Positives = 18/27 (65%), Gaps = 3/27 (11%)
Query: 57 PSDEKKDEKIAEKAEE---KKDEKVVE 80
P EKK++K ++ EE KK++KV +
Sbjct: 558 PKKEKKEKKEKKEKEEYKLKKEKKVYD 584
>ref|NP_223060.1| ASPARTATE CARBAMOYLTRANSFERASE CATALYTIC CHAIN [Helicobacter
pylori J99]
Length = 307
Score = 21.9 bits (45), Expect = 2.4
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 26 LLERHNKEAEKILLDLGKKNEQVIDLNLEDLPSDEKKDEKI 66
LL+ + ++I L L K + D N L + EK +KI
Sbjct: 8 LLQTSDLSLDEIKLLLNKASVYANDFNAVSLETREKMQDKI 48
>ref|NP_223965.1| putative [Helicobacter pylori J99]
Length = 412
Score = 21.6 bits (44), Expect = 3.1
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 27 LERHNKEAEKILLDLGKKNEQVIDLNLEDLPSDEKKDEKIAE 68
+E + + L L KK E + NLE + K++EKIA+
Sbjct: 322 VENAKNKTRHLALKLLKKLE-TLQKNLESINKIIKQNEKIAQ 362
>ref|NP_223951.1| 30S RIBOSOMAL PROTEIN S3 [Helicobacter pylori J99]
Length = 234
Score = 21.6 bits (44), Expect = 3.1
Identities = 10/60 (16%), Positives = 30/60 (49%)
Query: 24 GLLLERHNKEAEKILLDLGKKNEQVIDLNLEDLPSDEKKDEKIAEKAEEKKDEKVVEKNA 83
GL++ + + EK+ L ++ + +N++++ + + AE + +++V + A
Sbjct: 74 GLIIGKKGVDIEKVKEGLKTLIKKEVSINIKEVKRPQADAQLAAENVATQLEKRVAFRRA 133
>ref|NP_223258.1| putative [Helicobacter pylori J99]
Length = 591
Score = 21.6 bits (44), Expect = 3.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 51 LNLEDLPSDEKKDEKIAEKAEEKKDEKVVE 80
LN+E+ +KD EK K EK+VE
Sbjct: 455 LNVENGVPIYQKDVSSCEKHRSKAYEKIVE 484
>ref|NP_224097.1| putative [Helicobacter pylori J99]
Length = 376
Score = 21.2 bits (43), Expect = 4.1
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 1 MSKSAIFVVSGFLAFLLYALLLYGLL 26
M AI G L L+ A L+YGLL
Sbjct: 9 MELRAIVSHKGVLLILIGAPLIYGLL 34
>ref|NP_223849.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 329
Score = 21.2 bits (43), Expect = 4.1
Identities = 12/42 (28%), Positives = 21/42 (49%), Gaps = 2/42 (4%)
Query: 22 LYGLLLERHNKEAEKILLDLGKKNEQVIDLNLEDLPSDEKKD 63
+YG L+R K A+K L+ G + + LN ++ + D
Sbjct: 158 VYGAFLKRLKKSAQKELILKGAHFD--VSLNANEVYQQDSND 197
>ref|NP_223743.1| PHOSPHOGLUCONATE DEHYDRATASE [Helicobacter pylori J99]
Length = 608
Score = 21.2 bits (43), Expect = 4.1
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 7 FVVSGFLAFLLYALLLYGLLLE 28
F G LAF++ LL GLL E
Sbjct: 342 FEACGGLAFVIKELLKEGLLFE 363
>ref|NP_223674.1| putative [Helicobacter pylori J99]
Length = 200
Score = 21.2 bits (43), Expect = 4.1
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 45 NEQVIDLNLEDLPSDEKKDEKIAEKAEEKKDEKVVEKNAN 84
N +I N S++ DEK E + EK V KNA+
Sbjct: 117 NLLLIPKNANSSLSNKPFDEKRKEYLKGSYSEKEVAKNAS 156
>ref|NP_223516.1| putative [Helicobacter pylori J99]
Length = 218
Score = 21.2 bits (43), Expect = 4.1
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 52 NLEDLPSDEKKDEKIAEKA 70
NLE + ++ K DEK+ E A
Sbjct: 6 NLEQVRNEFKSDEKLLEGA 24
>ref|NP_223386.1| putative [Helicobacter pylori J99]
Length = 569
Score = 21.2 bits (43), Expect = 4.1
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 27 LERHNKEAEKILLDLGKKNEQVIDLNLE 54
L+ N+E E + L K+ +++ DLN E
Sbjct: 295 LQDINREMEYLNKTLEKRRKEIQDLNKE 322
>ref|NP_223298.1| putative [Helicobacter pylori J99]
Length = 150
Score = 21.2 bits (43), Expect = 4.1
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 1 MSKSAIFVVSGFLAFLLYA 19
+SK +F+ +G LA+LL A
Sbjct: 16 LSKIVLFLNTGLLAYLLSA 34
>ref|NP_223249.1| putative FLAGELLAR MOTOR SWITCH PROTEIN [Helicobacter pylori
J99]
Length = 123
Score = 21.2 bits (43), Expect = 4.1
Identities = 9/22 (40%), Positives = 14/22 (62%)
Query: 56 LPSDEKKDEKIAEKAEEKKDEK 77
+P E KIAEK +EK +++
Sbjct: 1 MPETEANKLKIAEKEKEKANKE 22
>ref|NP_223195.1| cag island protein [Helicobacter pylori J99]
Length = 522
Score = 21.2 bits (43), Expect = 4.1
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 60 EKKDEKIAEKAEEKKDEKVVEKNA 83
EK+ ++ A+KA++ K EK E+ A
Sbjct: 151 EKEAKEQAQKAQKDKREKRKEERA 174
>ref|NP_223191.1| cag island protein, DNA transfer protein [Helicobacter pylori J99]
Length = 748
Score = 21.2 bits (43), Expect = 4.1
Identities = 9/35 (25%), Positives = 19/35 (53%)
Query: 21 LLYGLLLERHNKEAEKILLDLGKKNEQVIDLNLED 55
+ YG+ + + + EK+ LGK Q + +++D
Sbjct: 609 MYYGINNDNYYEHFEKLSKVLGKYTRQDVSRSIDD 643
>ref|NP_223141.1| GLUTATHIONE-REGULATED POTASSIUM-EFFLUX SYSTEM PROTEIN [Helicobacter
pylori J99]
Length = 416
Score = 21.2 bits (43), Expect = 4.1
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 6 IFVVSGFLAFLLYALLLYGLLLERHNKEAEKILLDLGKKNE 46
+ +V F F++YALL + R K A K L L + E
Sbjct: 298 LILVMSFKTFIIYALLRF----FRDAKTAIKTALSLAQIGE 334
>ref|NP_224176.1| TRANSCRIPTION-REPAIR COUPLING FACTOR [Helicobacter pylori J99]
Length = 1001
Score = 20.8 bits (42), Expect = 5.4
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 33 EAEKILLDLGKKNEQVI 49
E+E+I+L+ K N QV+
Sbjct: 731 ESEEIMLEFAKGNYQVL 747
>ref|NP_223569.1| putative IRON-REGULATED OUTER MEMBRANE PROTEIN [Helicobacter
pylori J99]
Length = 815
Score = 20.8 bits (42), Expect = 5.4
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 68 EKAEEKKDEKVVEKN 82
E EE+K+EK E+N
Sbjct: 25 EAKEEEKEEKKTERN 39
>ref|NP_223500.1| PHOSPHOMETHYLPYRIMIDINE KINASE [Helicobacter pylori J99]
Length = 269
Score = 20.8 bits (42), Expect = 5.4
Identities = 15/46 (32%), Positives = 20/46 (42%), Gaps = 3/46 (6%)
Query: 29 RHNKEAEK---ILLDLGKKNEQVIDLNLEDLPSDEKKDEKIAEKAE 71
R +K A K +L DLG KN + + E + D E AE
Sbjct: 153 RDDKSASKAMGVLRDLGVKNAVIKGGHTEHFQGEFSNDWVFLEDAE 198
>ref|NP_223243.1| putative [Helicobacter pylori J99]
Length = 678
Score = 20.8 bits (42), Expect = 5.4
Identities = 13/63 (20%), Positives = 29/63 (45%), Gaps = 2/63 (3%)
Query: 21 LLYGLLLERHNKEAEKILLDLGKKNEQVIDLNLEDLPSDEKKDEKIAEKAEEKKDEKVVE 80
+L+ +LE N + + + N + ++NL+ +K ++ EK K E + +
Sbjct: 442 ILFDYILENTNPHEKTFSMVMTLSNHAIKNVNLKAFGVPLEKIQQFVEKT--PKSENLPD 499
Query: 81 KNA 83
N+
Sbjct: 500 ANS 502
>ref|NP_223102.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 733
Score = 20.8 bits (42), Expect = 5.4
Identities = 18/65 (27%), Positives = 30/65 (45%), Gaps = 1/65 (1%)
Query: 12 FLAFLLYALLLYGLLLERHNKEAEKILLDLGKKNEQVIDLNLEDLPSDEKKDEKIAEKAE 71
F+A+L+ GLL + N ++K LDL +K + + K E+I + E
Sbjct: 328 FIAWLISREGKDGLLTKLENYLSQKFGLDLSEKPHS-SKIKPHAPTTKTKTPEEIKREEE 386
Query: 72 EKKDE 76
+ DE
Sbjct: 387 QAIDE 391
>ref|NP_222942.1| putative [Helicobacter pylori J99]
Length = 123
Score = 20.8 bits (42), Expect = 5.4
Identities = 15/57 (26%), Positives = 24/57 (41%)
Query: 21 LLYGLLLERHNKEAEKILLDLGKKNEQVIDLNLEDLPSDEKKDEKIAEKAEEKKDEK 77
+LY + + + K L LGK +LNLE++ + + K E K K
Sbjct: 66 ILYAPKINHLDFKTFKDALSLGKGMMPKYNLNLEEIQAIYLYITSLGHKDERKDPSK 122
>ref|NP_222815.1| putative [Helicobacter pylori J99]
Length = 260
Score = 20.8 bits (42), Expect = 5.4
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 16/68 (23%)
Query: 27 LERHNKEAEKILLDLGKKNEQVID----------------LNLEDLPSDEKKDEKIAEKA 70
LE K ++I + +K+E + D LN +D DE EK+ +
Sbjct: 46 LEIIQKYKDRIACVMSEKDEGIYDAMNKGIKRSSGDIIALLNSDDFYKDEFVVEKVVHEF 105
Query: 71 EEKKDEKV 78
E K + V
Sbjct: 106 ENKNCDSV 113
>ref|NP_223664.1| putative [Helicobacter pylori J99]
Length = 466
Score = 20.4 bits (41), Expect = 7.0
Identities = 7/23 (30%), Positives = 16/23 (69%)
Query: 56 LPSDEKKDEKIAEKAEEKKDEKV 78
+P+D KD+K ++ E+K +++
Sbjct: 400 IPADALKDDKEHQENLEQKQQEI 422
>ref|NP_223536.1| CYSTEINYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 465
Score = 20.4 bits (41), Expect = 7.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 41 LGKKNEQVIDLNLEDLPSDEKKDEKI 66
LG V++ N EDL +K+ +KI
Sbjct: 297 LGVHYRSVLNFNEEDLLMSKKRLDKI 322
>ref|NP_223019.1| putative [Helicobacter pylori J99]
Length = 251
Score = 20.4 bits (41), Expect = 7.0
Identities = 7/19 (36%), Positives = 12/19 (62%)
Query: 1 MSKSAIFVVSGFLAFLLYA 19
++ S F++ G + FLL A
Sbjct: 221 LATSTFFIIGGIILFLLSA 239
>ref|NP_222842.1| L-serine transporter, similar to E. coli nhaB [Helicobacter pylori
J99]
Length = 413
Score = 20.4 bits (41), Expect = 7.0
Identities = 9/17 (52%), Positives = 11/17 (63%)
Query: 11 GFLAFLLYALLLYGLLL 27
GFL LLY L +Y + L
Sbjct: 92 GFLITLLYFLAIYPICL 108
>ref|NP_224160.1| TYPE II RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 326
Score = 20.0 bits (40), Expect = 9.2
Identities = 10/36 (27%), Positives = 18/36 (49%)
Query: 35 EKILLDLGKKNEQVIDLNLEDLPSDEKKDEKIAEKA 70
+ + + K+ + LN E+ +D+K I EKA
Sbjct: 179 QSVFFETNKERLILKTLNEENKQNDKKLKRSIKEKA 214
>ref|NP_223771.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 179
Score = 20.0 bits (40), Expect = 9.2
Identities = 8/27 (29%), Positives = 18/27 (66%)
Query: 58 SDEKKDEKIAEKAEEKKDEKVVEKNAN 84
SD++ ++I +KA+E + ++E N +
Sbjct: 88 SDQETLDEIVQKAKENHMQVLLEGNTD 114
>ref|NP_223560.1| putative [Helicobacter pylori J99]
Length = 524
Score = 20.0 bits (40), Expect = 9.2
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 35 EKILLDLGKKNEQVIDLNLEDLPSDEKKDEKIAEK 69
+KI D E L+ P D K+D K EK
Sbjct: 43 QKISKDKTAPKESPNHSALKATPKDAKEDAKALEK 77
>ref|NP_223546.1| putative [Helicobacter pylori J99]
Length = 68
Score = 20.0 bits (40), Expect = 9.2
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 40 DLGKKNEQVIDLNLEDLPSDEKKDEKIAEKAEEKKDEKVVEK 81
+LGK +Q+ + L + E + ++ KKDE + K
Sbjct: 14 ELGKLEKQLAKYQSKVLEIKTQMKEIKKQYSQAKKDENLANK 55
>ref|NP_223252.1| putative [Helicobacter pylori J99]
Length = 978
Score = 20.0 bits (40), Expect = 9.2
Identities = 8/10 (80%), Positives = 9/10 (90%)
Query: 36 KILLDLGKKN 45
KI LDLG+KN
Sbjct: 437 KIALDLGQKN 446
>ref|NP_223199.1| cag island protein [Helicobacter pylori J99]
Length = 280
Score = 20.0 bits (40), Expect = 9.2
Identities = 11/41 (26%), Positives = 19/41 (45%)
Query: 42 GKKNEQVIDLNLEDLPSDEKKDEKIAEKAEEKKDEKVVEKN 82
G N+QVI+ + EK ++ ++K+ E KN
Sbjct: 175 GANNKQVINEVAREKAQLEKINQYYKTLLQDKEQEYTTRKN 215
>ref|NP_223173.1| putative [Helicobacter pylori J99]
Length = 251
Score = 20.0 bits (40), Expect = 9.2
Identities = 9/22 (40%), Positives = 14/22 (62%)
Query: 17 LYALLLYGLLLERHNKEAEKIL 38
L L ++GLL + H+ + KIL
Sbjct: 224 LEMLKIFGLLSQVHHNDVLKIL 245
>ref|NP_223113.1| FLAGELLAR MOTOR SWITCH PROTEIN [Helicobacter pylori J99]
Length = 285
Score = 20.0 bits (40), Expect = 9.2
Identities = 11/41 (26%), Positives = 22/41 (52%)
Query: 41 LGKKNEQVIDLNLEDLPSDEKKDEKIAEKAEEKKDEKVVEK 81
+G+K + D+ D+ S + D+ + + E D+KV+ K
Sbjct: 216 IGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAK 256
>ref|NP_223108.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 455
Score = 20.0 bits (40), Expect = 9.2
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 49 IDLNLEDLPSDEKKDEKIAEKAEEKKDEKVVEK 81
++ N +D KDE +K EK++ K E+
Sbjct: 120 LEANKQDALLQALKDEANHKKEREKREVKQEEE 152
>ref|NP_223048.1| GTP-BINDING PROTEIN [Helicobacter pylori J99]
Length = 604
Score = 20.0 bits (40), Expect = 9.2
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 49 IDLNLEDLPSDEKKDEKIAEKAEEKKD 75
+D NLE LP K D A E K+D
Sbjct: 127 LDNNLEILPVINKIDLPNANVLEVKQD 153
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.311 0.134 0.341
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,401
Number of Sequences: 1491
Number of extensions: 4596
Number of successful extensions: 59
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of query: 84
length of database: 494,079
effective HSP length: 60
effective length of query: 24
effective length of database: 404,619
effective search space: 9710856
effective search space used: 9710856
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.8 bits)
S2: 40 (20.0 bits)