BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645743|ref|NP_207920.1| biopolymer transport
protein (exbD) [Helicobacter pylori 26695]
(133 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223774.1| BIOPOLYMER TRANSPORT PROTEIN [Helicobacter... 263 1e-72
ref|NP_223977.1| BIOPOLYMER TRANSPORT EXBD PROTEIN [Helicob... 51 1e-08
ref|NP_224057.1| BIOPOLYMER TRANSPORT PROTEIN [Helicobacter... 49 6e-08
ref|NP_222912.1| putative [Helicobacter pylori J99] 26 0.33
ref|NP_223699.1| 30S RIBOSOMAL PROTEIN S1 [Helicobacter pyl... 25 0.56
ref|NP_223288.1| putative 2,3,4,5-TETRAHYDROPYRIDINE-2-CARB... 22 6.2
ref|NP_223135.1| putative [Helicobacter pylori J99] 22 6.2
ref|NP_222946.1| putative OCTAPRENYL-DIPHOSPHATE SYNTHASE [... 22 6.2
ref|NP_223631.1| GTPase in circumferential ring formation [... 22 8.1
ref|NP_223549.1| putative [Helicobacter pylori J99] 22 8.1
>ref|NP_223774.1| BIOPOLYMER TRANSPORT PROTEIN [Helicobacter pylori J99]
Length = 133
Score = 263 bits (672), Expect = 1e-72
Identities = 132/133 (99%), Positives = 133/133 (99%)
Query: 1 MNYDNYWDEDKPELNITPLVDVMLVLLAILMVTTPTLTYKEEIALPSGSKTARATQDKMI 60
MNYDNYWDEDKPELNITPLVDVMLVLLAILMVTTPTLTYKEEIALPSGSKTARATQDK+I
Sbjct: 1 MNYDNYWDEDKPELNITPLVDVMLVLLAILMVTTPTLTYKEEIALPSGSKTARATQDKVI 60
Query: 61 EIRMDKDAKIYIDSQTYEYNSFPDTFNLLSKKYDKDTRVSIRADKRLTYDKVIYLLKTIK 120
EIRMDKDAKIYIDSQTYEYNSFPDTFNLLSKKYDKDTRVSIRADKRLTYDKVIYLLKTIK
Sbjct: 61 EIRMDKDAKIYIDSQTYEYNSFPDTFNLLSKKYDKDTRVSIRADKRLTYDKVIYLLKTIK 120
Query: 121 EAGFLKVSLITSP 133
EAGFLKVSLITSP
Sbjct: 121 EAGFLKVSLITSP 133
>ref|NP_223977.1| BIOPOLYMER TRANSPORT EXBD PROTEIN [Helicobacter pylori J99]
Length = 129
Score = 50.8 bits (120), Expect = 1e-08
Identities = 31/121 (25%), Positives = 65/121 (53%), Gaps = 7/121 (5%)
Query: 14 LNITPLVDVMLVLLAI-LMVTTPTLTYKEEIALPS--GSKTARATQDKMIEIRMDKDAKI 70
LN+ P +D+MLVLLAI L ++T K +++LP+ ++ ++ K++ I +D+ I
Sbjct: 10 LNVVPFIDIMLVLLAIVLSISTFIAQGKIKVSLPNAKNAEKSQPNDQKVVVISVDEHDNI 69
Query: 71 YIDSQTYEYNSFPDTFNLLSKKYDKDTRVSIRADKRLTYDKVIYLLKTIKEAGFLKVSLI 130
++D + + + + K+ D T + +++DK ++ I ++ +KE S+
Sbjct: 70 FVDDKPTNL----EALSAVVKQTDPKTLIDLKSDKSSRFETFISIMDILKEHNHENFSIS 125
Query: 131 T 131
T
Sbjct: 126 T 126
>ref|NP_224057.1| BIOPOLYMER TRANSPORT PROTEIN [Helicobacter pylori J99]
Length = 133
Score = 48.5 bits (114), Expect = 6e-08
Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 12/113 (10%)
Query: 14 LNITPLVDVMLVLLAILMVTTPTL-TYKEEIALPSGSKTARATQD----KMIEIRMDKDA 68
+N+ P +D+MLVLL I++ T + T K I++P K + ++D K + I +
Sbjct: 7 MNVVPFIDIMLVLLVIVLTTASFVQTSKLPISIPQVDKDSTDSKDVLDKKQVTIAISNKG 66
Query: 69 KIYIDSQTYEYNSFPDTFNLLSKKYDKDTRVSIRADKRLTYD---KVIYLLKT 118
Y D + + + + L+ KDT + ++ DK+ D KV+ LL+T
Sbjct: 67 SFYFDDKEISFENLKHKVSTLA----KDTPIVLQGDKKSNLDNFIKVVDLLQT 115
>ref|NP_222912.1| putative [Helicobacter pylori J99]
Length = 916
Score = 26.2 bits (56), Expect = 0.33
Identities = 18/53 (33%), Positives = 29/53 (53%), Gaps = 13/53 (24%)
Query: 57 DKMIEIRMDKDAKIYIDSQTYEYNSFPDTFNLLSKKY----DKDTRVSIRADK 105
+K +I+ DKD +IY DS ++FN +SKKY D+++ I+ K
Sbjct: 459 NKRSKIKFDKDLEIYFDSH--------ESFN-ISKKYLQEIDQESLKKIKQSK 502
>ref|NP_223699.1| 30S RIBOSOMAL PROTEIN S1 [Helicobacter pylori J99]
Length = 552
Score = 25.4 bits (54), Expect = 0.56
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 22/103 (21%)
Query: 2 NYDNYWDEDKPELNITPLVDVMLV-------------LLAILMVTTPTLTYKEEIALPSG 48
N+D +WD+DK + + DV+ V L A +VT+PT EE A
Sbjct: 400 NHDAFWDKDKKCKDHYKIGDVIKVKILKINKKDKKISLSAKHLVTSPT----EEFA--QK 453
Query: 49 SKTARATQDKMIEIRMDKDAKIYIDSQTYEYNSFPDTFNLLSK 91
KT Q K++ I KD ++I + + + N L K
Sbjct: 454 HKTDSVIQGKVVSI---KDFGVFIHADGIDVLIKNEDLNPLKK 493
>ref|NP_223288.1| putative 2,3,4,5-TETRAHYDROPYRIDINE-2-CARBOXYLATE
N-SUCCINYLTRANSFERASE [Helicobacter pylori J99]
Length = 401
Score = 21.9 bits (45), Expect = 6.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 20 VDVMLVLLAILMVTTPTLTYKEE 42
VD+ + IL T P L +KEE
Sbjct: 29 VDIAPISKKILCATYPVLNWKEE 51
>ref|NP_223135.1| putative [Helicobacter pylori J99]
Length = 631
Score = 21.9 bits (45), Expect = 6.2
Identities = 10/32 (31%), Positives = 17/32 (52%)
Query: 61 EIRMDKDAKIYIDSQTYEYNSFPDTFNLLSKK 92
E +D + I ++ Y +F D+ LLSK+
Sbjct: 433 EKEIDTSSLISVEGNVEGYETFSDSLFLLSKE 464
>ref|NP_222946.1| putative OCTAPRENYL-DIPHOSPHATE SYNTHASE [Helicobacter pylori J99]
Length = 307
Score = 21.9 bits (45), Expect = 6.2
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 58 KMIEIRMDKDAKIYIDSQTYEYNSFPDTFNLLSKKYDKDT 97
K + I ++KDAK+Y D + +F +LL D +T
Sbjct: 172 KSMAILLNKDAKMYADFGLHFGMAFQIIDDLLDITQDANT 211
>ref|NP_223631.1| GTPase in circumferential ring formation [Helicobacter pylori J99]
Length = 385
Score = 21.6 bits (44), Expect = 8.1
Identities = 7/19 (36%), Positives = 13/19 (67%)
Query: 115 LLKTIKEAGFLKVSLITSP 133
++K KE G L ++++T P
Sbjct: 134 IVKIAKEVGALTIAIVTKP 152
>ref|NP_223549.1| putative [Helicobacter pylori J99]
Length = 90
Score = 21.6 bits (44), Expect = 8.1
Identities = 13/31 (41%), Positives = 20/31 (63%), Gaps = 3/31 (9%)
Query: 90 SKKYDKDTRVSIR--ADKRLTYDKVIYLLKT 118
SKK+DKD ++ ++ D +L Y KV+ L T
Sbjct: 7 SKKFDKDLKILVKNGFDLKLLY-KVVGNLAT 36
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.317 0.134 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 129,833
Number of Sequences: 1491
Number of extensions: 5074
Number of successful extensions: 19
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 10
length of query: 133
length of database: 494,079
effective HSP length: 69
effective length of query: 64
effective length of database: 391,200
effective search space: 25036800
effective search space used: 25036800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 44 (21.6 bits)