BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645745|ref|NP_207922.1| ATP synthase F1, subunit
epsilon (atpC) [Helicobacter pylori 26695]
(124 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223776.1| ATP synthase F1, subunit epsilon [Helicoba... 233 1e-63
ref|NP_222759.1| phosphomannose isomerase/GDP-mannose pyrop... 24 1.1
ref|NP_224126.1| putative [Helicobacter pylori J99] 22 7.1
ref|NP_223721.1| putative [Helicobacter pylori J99] 22 7.1
ref|NP_223288.1| putative 2,3,4,5-TETRAHYDROPYRIDINE-2-CARB... 22 7.1
ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99] 21 9.3
>ref|NP_223776.1| ATP synthase F1, subunit epsilon [Helicobacter pylori J99]
Length = 123
Score = 233 bits (594), Expect = 1e-63
Identities = 121/123 (98%), Positives = 122/123 (98%)
Query: 2 MALLKISVVVPEGEVYTGEVKSVVLPGVEGEFGVLYGHSNMITLLQAGVIEIETENQKEH 61
MALLKISVVVPEGEVYTGEVKSVVLPGVEGEFGVLYGHSNMITLLQAGV+EIETENQKEH
Sbjct: 1 MALLKISVVVPEGEVYTGEVKSVVLPGVEGEFGVLYGHSNMITLLQAGVVEIETENQKEH 60
Query: 62 IAINWGYAEVTNERVDILADGAVFIKKESDDRDDAISRAKKLLEDASSDRLAVSSVLAKI 121
IAINWGYAEVTNERVDILADGAVFIKK SDDRDDAISRAKKLLEDASSDRLAVSSVLAKI
Sbjct: 61 IAINWGYAEVTNERVDILADGAVFIKKGSDDRDDAISRAKKLLEDASSDRLAVSSVLAKI 120
Query: 122 ESL 124
ESL
Sbjct: 121 ESL 123
>ref|NP_222759.1| phosphomannose isomerase/GDP-mannose pyrophosphorylase
[Helicobacter pylori J99]
Length = 470
Score = 24.3 bits (51), Expect = 1.1
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 29 VEGEFGVLYGHSNMITLLQAGVIEIETENQ---KEHIAI--NWGYAEVTNE 74
++ + +L H + L+A V EIET NQ + H + WG EV +E
Sbjct: 319 IDTKDALLVAHKDKAKDLKALVSEIETHNQELLQTHTKVYRPWGSYEVLHE 369
>ref|NP_224126.1| putative [Helicobacter pylori J99]
Length = 227
Score = 21.6 bits (44), Expect = 7.1
Identities = 12/29 (41%), Positives = 14/29 (47%)
Query: 37 YGHSNMITLLQAGVIEIETENQKEHIAIN 65
Y H N TLL G + K HIA+N
Sbjct: 125 YYHENKDTLLIKGKKRLLYNYIKAHIALN 153
>ref|NP_223721.1| putative [Helicobacter pylori J99]
Length = 223
Score = 21.6 bits (44), Expect = 7.1
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 77 DILADGAVFIKKESDDRDDAISRAKKLLEDASSDRLAVS 115
++L+ G K+ +D RD+ ++ LED D ++S
Sbjct: 36 NLLSSGTQSSKELNDKRDNIDKKSYAGLEDVFLDNKSIS 74
>ref|NP_223288.1| putative 2,3,4,5-TETRAHYDROPYRIDINE-2-CARBOXYLATE
N-SUCCINYLTRANSFERASE [Helicobacter pylori J99]
Length = 401
Score = 21.6 bits (44), Expect = 7.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 43 ITLLQAGVIEIETENQKEHIAIN 65
+T+L VIEIE K+ + +N
Sbjct: 330 VTILAGSVIEIEENEFKKLLEVN 352
>ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99]
Length = 856
Score = 21.2 bits (43), Expect = 9.3
Identities = 7/42 (16%), Positives = 23/42 (54%)
Query: 73 NERVDILADGAVFIKKESDDRDDAISRAKKLLEDASSDRLAV 114
++ +D++ +GA +K + + +S K+ ++ ++ A+
Sbjct: 385 DKAIDLIDEGAAQLKMQMESEPAKLSSVKRSIQRLEMEKQAL 426
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.313 0.133 0.352
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,440
Number of Sequences: 1491
Number of extensions: 4301
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 6
length of query: 124
length of database: 494,079
effective HSP length: 68
effective length of query: 56
effective length of database: 392,691
effective search space: 21990696
effective search space used: 21990696
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 43 (21.2 bits)