BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645749|ref|NP_207926.1| ATP synthase F1, subunit
delta (atpH) [Helicobacter pylori 26695]
(180 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223780.1| putative ATP synthase F1, subunit delta [H... 318 7e-89
ref|NP_223789.1| putative [Helicobacter pylori J99] 32 0.013
ref|NP_223637.1| topoisomerase I [Helicobacter pylori J99] 28 0.14
ref|NP_223645.1| putative [Helicobacter pylori J99] 26 0.55
ref|NP_223629.1| putative [Helicobacter pylori J99] 26 0.55
ref|NP_223062.1| multi-drug resistance protein [Helicobacte... 25 1.2
ref|NP_223761.1| putative [Helicobacter pylori J99] 25 1.6
ref|NP_223600.1| putative [Helicobacter pylori J99] 25 1.6
ref|NP_222728.1| PANTOATE--BETA-ALANINE LIGASE [Helicobacte... 25 1.6
ref|NP_223628.1| ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE ... 24 2.7
ref|NP_223535.1| putative [Helicobacter pylori J99] 23 3.6
ref|NP_223158.1| putative [Helicobacter pylori J99] 23 3.6
ref|NP_224003.1| putative [Helicobacter pylori J99] 23 4.7
ref|NP_223747.1| ZINC-DEPENDENT ALCOHOL DEHYDROGENASE [Heli... 23 6.1
ref|NP_223701.1| D-3-PHOSPHOGLYCERATE DEHYDROGENASE [Helico... 23 6.1
ref|NP_223412.1| putative [Helicobacter pylori J99] 22 7.9
ref|NP_223301.1| POLYNUCLEOTIDE ADENYLYLTRANSFERASE [Helico... 22 7.9
ref|NP_222787.1| UREASE ACCESSORY PROTEIN [Helicobacter pyl... 22 7.9
>ref|NP_223780.1| putative ATP synthase F1, subunit delta [Helicobacter pylori J99]
Length = 180
Score = 318 bits (814), Expect = 7e-89
Identities = 167/180 (92%), Positives = 171/180 (94%)
Query: 1 MQDLKVISKHYAKALKNHTKSDLALLEEIVVGLKNATEAIRQHKLNQVLAHVSLKVKKEV 60
MQDLKVISKHYAKALKNHTKSDLALLEEIVVGLKN EAI+ HKLNQVLAHVSLKVKKEV
Sbjct: 1 MQDLKVISKHYAKALKNHTKSDLALLEEIVVGLKNLAEAIKLHKLNQVLAHVSLKVKKEV 60
Query: 61 VFEILEKITSIKACSVLKPVMEVVLKNNRLDMLELITEELSFDSKRTLEATLLVPEKLEN 120
V EILEKIT KACS+LKPVMEVVLKNNRLDMLEL+ EELSFDSKRTLEATLLVP+KLEN
Sbjct: 61 VLEILEKITPTKACSILKPVMEVVLKNNRLDMLELVAEELSFDSKRTLEATLLVPQKLEN 120
Query: 121 NELEAVQQKLQARFNAPVEITQDTWSKKGVSLSVSSLDLEIGFSKEDILKKIEKQVIQSI 180
NELE VQQKLQARFNAPVEI QDTWSKKGVSLSVSSLDLEIGFSKEDILKKIEKQVIQSI
Sbjct: 121 NELEEVQQKLQARFNAPVEIAQDTWSKKGVSLSVSSLDLEIGFSKEDILKKIEKQVIQSI 180
>ref|NP_223789.1| putative [Helicobacter pylori J99]
Length = 97
Score = 31.6 bits (70), Expect = 0.013
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 1 MQDLKVISKHYAKALKNHTKSDLALLEEIVVGLKNATEAIRQHKLNQVLAHVSLKVKKEV 60
+ L+++ K A+ LKN+T L V + +T A R +N L V L+ K +
Sbjct: 2 IDQLQIVPK--AQVLKNNTMERSLALALQKVSIPRSTSAHRTLLINHFLEQVILQNIKTI 59
Query: 61 VFEILEKITSIKACSVLKPVMEVVLKNN 88
F + K+T +LKP + N+
Sbjct: 60 AFRGIIKLTPHNENPLLKPYSAFITLNS 87
>ref|NP_223637.1| topoisomerase I [Helicobacter pylori J99]
Length = 425
Score = 28.1 bits (61), Expect = 0.14
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 1 MQDLKVISKHYAKALKNHTKSDLALLEEIVVGLKNATEAIRQHKLNQVLAHVSLKVKKEV 60
+ DLKV + + + + +K+ A+ E V+ K ++ H+ N VLA+ +LKV K +
Sbjct: 371 IDDLKVYTLIFFNTICSQSKN--AIYENTVLNFK-----VKTHRFNAVLANSNLKVLKRL 423
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 26.2 bits (56), Expect = 0.55
Identities = 34/148 (22%), Positives = 58/148 (38%), Gaps = 29/148 (19%)
Query: 26 LEEIVVG---LKNATEAIRQHKLN------QVLAHVSLKVKKEV--------VFEILEK- 67
L++ +VG LK+ T I K +VL + ++KK + F +L+
Sbjct: 270 LKDSIVGAQLLKDPTTKIFYDKFQLKISPKKVLEILENRLKKSIETTNETLNAFNVLDSQ 329
Query: 68 ---ITSIKACSVLKPVMEVVLKNNRLDM--------LELITEELSFDSKRTLEATLLVPE 116
+ +I L P E + +N +++ E T+E + + T E T
Sbjct: 330 AIDLNAISNSVGLNPTQESKITDNSVELNNAQEQTAQEQTTQEQTTQEQTTQEQTTQEQT 389
Query: 117 KLENNELEAVQQKLQARFNAPVEITQDT 144
E E Q+ + NAP I Q+T
Sbjct: 390 TQEQTTQEQTTQEQDTQENAPTTIKQET 417
>ref|NP_223629.1| putative [Helicobacter pylori J99]
Length = 487
Score = 26.2 bits (56), Expect = 0.55
Identities = 33/136 (24%), Positives = 53/136 (38%), Gaps = 16/136 (11%)
Query: 1 MQDLKVISKHYAKALKNHTKSDLALLEEIVVGLKNATEAIRQHKLNQVLAHVSLKVKKEV 60
+QD K + + L ++ AL I + NA Q K
Sbjct: 264 LQDFKSVQEQVKHDLNMQKANEKALRSYIALKKGNAQNYTTQD---------FEKNNSPY 314
Query: 61 VFEILEKITSIKACSVLKP------VMEVVLKNNRLDMLELITEELS-FDSKRTLEATLL 113
EI +K+T++K VLKP + V L + D L+ E S ++ T E TL+
Sbjct: 315 TAEITQKLTALKPLEVLKPEPFKDGFIVVQLVSQIKDELQNFDEAKSALKTRLTQEKTLM 374
Query: 114 VPEKLENNELEAVQQK 129
+ L +L+ + K
Sbjct: 375 ALQTLAKEKLKDFKGK 390
>ref|NP_223062.1| multi-drug resistance protein [Helicobacter pylori J99]
Length = 551
Score = 25.0 bits (53), Expect = 1.2
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 4 LKVISKHYAKALKNHTKSDLALL-EEIVVGLKNA 36
+K+ + Y+K LK H KS + +L +VV L A
Sbjct: 1 MKLFFRRYSKYLKEHYKSFIVVLFSSLVVALSTA 34
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 24.6 bits (52), Expect = 1.6
Identities = 31/135 (22%), Positives = 60/135 (43%), Gaps = 22/135 (16%)
Query: 8 SKHYAKALKNH--TKSDLALLEEIVVGLKNATEAIRQHKLNQVLAHVSLKVKKEVVFEIL 65
SK+ + KN T + L ++EE+ G+K A+E I++ + +K +I
Sbjct: 34 SKNLELSAKNSKFTNNTLKIIEELNNGVKQASEEIKEKAFD-------FSNEKLTNEQIK 86
Query: 66 EKITSIKACSVLKPVMEVVLKNNRLDMLELITEELSFDSKRTLEATLLVPEKLENNELEA 125
E + + K + + + N +M+E + + ++K+ ++ EK N ELE
Sbjct: 87 ELLNNAKIPTSGRDAITFGTNNLNPEMVEFLHK----NNKK------MIIEKASNKELEL 136
Query: 126 VQQKLQARFNAPVEI 140
++ A F P I
Sbjct: 137 LK---DANFKHPENI 148
>ref|NP_223600.1| putative [Helicobacter pylori J99]
Length = 337
Score = 24.6 bits (52), Expect = 1.6
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 12/70 (17%)
Query: 105 KRTLEATLLVPEKLENNELEAVQQKLQARFNAPVEITQDTWSKKGVSLSVSSLDLEIGFS 164
K L+A + E L+ E V+ L+A F + DT L +S L ++G+
Sbjct: 204 KEVLKAVNAMQEDLDK---ECVKAFLKAFFEK--SLNTDT-------LKISELCKKVGYD 251
Query: 165 KEDILKKIEK 174
K+D LK +K
Sbjct: 252 KDDYLKLAQK 261
>ref|NP_222728.1| PANTOATE--BETA-ALANINE LIGASE [Helicobacter pylori J99]
Length = 276
Score = 24.6 bits (52), Expect = 1.6
Identities = 25/78 (32%), Positives = 32/78 (40%), Gaps = 10/78 (12%)
Query: 28 EIVVGLKNATEAIRQHKLNQVLAHVSLKVKKEVVFEILEKITSI-----KACSVLKPVME 82
EIV N + R LN +L + K LEKI KAC LK +
Sbjct: 174 EIVRDSDNLALSSRNVCLNATERKQALAIPKA-----LEKIQQAIDRGEKACEKLKKLGL 228
Query: 83 VVLKNNRLDMLELITEEL 100
+LKN +D LE +L
Sbjct: 229 EILKNLEVDYLECCNHKL 246
>ref|NP_223628.1| ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE AMINOTRANSFERASE
[Helicobacter pylori J99]
Length = 439
Score = 23.9 bits (50), Expect = 2.7
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 16 KNHTKSDLALLEEIVVGLKNATEAIRQHKLNQVLAHVSLKVKKEVVFEILEKITSIKACS 75
+N + + AL E I L+NA + + + ++ L H+ + EV + E+++
Sbjct: 332 ENVIEKNKALSEFIFSALQNALKPLIERQVVSDLRHLGMVFAFEVFLQTKERLSLAVFKK 391
Query: 76 VLKPVMEVVLKNNRLDMLE--LITEE 99
LK + + NN + ++ +IT E
Sbjct: 392 ALKKGLLLRPLNNTIYLMPPYIITHE 417
>ref|NP_223535.1| putative [Helicobacter pylori J99]
Length = 460
Score = 23.5 bits (49), Expect = 3.6
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 61 VFEILEKITSIKACSVLKPVMEVVLKNNRLDML 93
VF++ + +I + L P + + LKNN+ D++
Sbjct: 254 VFQLPLALFAIAISTALFPSIAIALKNNQQDLI 286
>ref|NP_223158.1| putative [Helicobacter pylori J99]
Length = 912
Score = 23.5 bits (49), Expect = 3.6
Identities = 19/77 (24%), Positives = 34/77 (43%), Gaps = 13/77 (16%)
Query: 19 TKSDLALLEEIVVGLKNATEAIRQHKLNQVLAHVSLKVKKEVVFEILEKITSIKACSVLK 78
+ + L ++EE+ G+K A+E I+ + K E + L+KI K +
Sbjct: 7 SNNTLKIIEELTNGVKQASEEIK-----------AKATKYEKALQELQKIDESKLTKEQQ 55
Query: 79 PVMEVVLKNNRLDMLEL 95
V++V LD E+
Sbjct: 56 QVLKVF--KGELDQTEI 70
>ref|NP_224003.1| putative [Helicobacter pylori J99]
Length = 972
Score = 23.1 bits (48), Expect = 4.7
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
Query: 37 TEAIRQHKLNQVLAHVSLKVKKEVVFEILEKITSIKACSVLKPVMEVVLKNNRLDMLELI 96
TE +Q + +V LK+K+ +++ K C LK V++V +++ L+ L I
Sbjct: 789 TEKHKQDRTFKVGDAELLKLKEHYYTPLIKA----KNCDWLKHVVKVKSESDFLEELLKI 844
Query: 97 TEELSFDSKRTLEATLLVPEKLENNELEAVQQKLQARF 134
TE L A + E L+N + + + RF
Sbjct: 845 TETL--QENYDFWAFSKIDEHLDNLFIPYIDNATERRF 880
>ref|NP_223747.1| ZINC-DEPENDENT ALCOHOL DEHYDROGENASE [Helicobacter pylori J99]
Length = 350
Score = 22.7 bits (47), Expect = 6.1
Identities = 11/40 (27%), Positives = 20/40 (49%)
Query: 43 HKLNQVLAHVSLKVKKEVVFEILEKITSIKACSVLKPVME 82
H++ V+ V +VKK V +++ + +C KP E
Sbjct: 64 HEIAGVIKEVGKEVKKFKVGDVVGVGCFVNSCKTCKPCKE 103
>ref|NP_223701.1| D-3-PHOSPHOGLYCERATE DEHYDROGENASE [Helicobacter pylori J99]
Length = 524
Score = 22.7 bits (47), Expect = 6.1
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 56 VKKEVVFEILEKITSIKAC 74
V +EV E+LE++ +I AC
Sbjct: 498 VDEEVSLEVLEELKNIPAC 516
>ref|NP_223412.1| putative [Helicobacter pylori J99]
Length = 292
Score = 22.3 bits (46), Expect = 7.9
Identities = 8/17 (47%), Positives = 14/17 (82%)
Query: 13 KALKNHTKSDLALLEEI 29
+ALK H K++L +L+E+
Sbjct: 28 QALKKHPKTNLVVLQEL 44
>ref|NP_223301.1| POLYNUCLEOTIDE ADENYLYLTRANSFERASE [Helicobacter pylori J99]
Length = 402
Score = 22.3 bits (46), Expect = 7.9
Identities = 13/62 (20%), Positives = 28/62 (44%)
Query: 118 LENNELEAVQQKLQARFNAPVEITQDTWSKKGVSLSVSSLDLEIGFSKEDILKKIEKQVI 177
+EN +E V + F + I + + +++ F+ +D+LK + K+ +
Sbjct: 140 IENQTIECVGEARLRFFEDALRILRALRFSATLGFKIAASTKRAVFACKDLLKHLSKERL 199
Query: 178 QS 179
QS
Sbjct: 200 QS 201
>ref|NP_222787.1| UREASE ACCESSORY PROTEIN [Helicobacter pylori J99]
Length = 170
Score = 22.3 bits (46), Expect = 7.9
Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 146 SKKGVSLSVSSLDL-EIGFSKEDILKKIEKQVI 177
+++G +++ D ++G S+ DIL K EK++I
Sbjct: 39 TRQGKDIAIRLKDAPKLGLSQGDILFKEEKEII 71
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.313 0.130 0.332
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 182,162
Number of Sequences: 1491
Number of extensions: 7821
Number of successful extensions: 37
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 18
length of query: 180
length of database: 494,079
effective HSP length: 72
effective length of query: 108
effective length of database: 386,727
effective search space: 41766516
effective search space used: 41766516
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 46 (22.3 bits)