BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645750|ref|NP_207927.1| ATP synthase F0, subunit b
(atpF) [Helicobacter pylori 26695]
(171 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223781.1| ATP synthase F0, subunit b [Helicobacter p... 313 2e-87
ref|NP_223788.1| putative [Helicobacter pylori J99] 40 4e-05
ref|NP_223610.1| putative [Helicobacter pylori J99] 34 0.002
ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori... 33 0.003
ref|NP_223971.1| putative [Helicobacter pylori J99] 31 0.016
ref|NP_223301.1| POLYNUCLEOTIDE ADENYLYLTRANSFERASE [Helico... 31 0.016
ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATE... 30 0.027
ref|NP_223656.1| putative [Helicobacter pylori J99] 30 0.046
ref|NP_222978.1| putative [Helicobacter pylori J99] 29 0.060
ref|NP_222831.1| putative [Helicobacter pylori J99] 29 0.060
ref|NP_223640.1| Component of conjugal plasmid transfer sys... 28 0.13
ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99] 28 0.13
ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [He... 28 0.13
ref|NP_224151.1| putative [Helicobacter pylori J99] 28 0.17
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 28 0.17
ref|NP_223637.1| topoisomerase I [Helicobacter pylori J99] 27 0.23
ref|NP_222757.1| DNA transformation compentancy [Helicobact... 27 0.30
ref|NP_224188.1| putative [Helicobacter pylori J99] 27 0.39
ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobac... 27 0.39
ref|NP_223759.1| putative [Helicobacter pylori J99] 27 0.39
ref|NP_223642.1| putative [Helicobacter pylori J99] 27 0.39
ref|NP_223531.1| putative [Helicobacter pylori J99] 27 0.39
ref|NP_223520.1| putative [Helicobacter pylori J99] 26 0.50
ref|NP_223195.1| cag island protein [Helicobacter pylori J99] 26 0.50
ref|NP_223646.1| putative [Helicobacter pylori J99] 26 0.66
ref|NP_223189.1| cag island protein [Helicobacter pylori J99] 26 0.66
ref|NP_224196.1| putative [Helicobacter pylori J99] 25 0.86
ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 25 0.86
ref|NP_223787.1| putative [Helicobacter pylori J99] 25 0.86
ref|NP_223327.1| putative [Helicobacter pylori J99] 25 0.86
ref|NP_224083.1| putative TYPE II DNA MODIFICATION ENZYME (... 25 1.1
ref|NP_223645.1| putative [Helicobacter pylori J99] 25 1.1
ref|NP_222979.1| putative [Helicobacter pylori J99] 25 1.1
ref|NP_223249.1| putative FLAGELLAR MOTOR SWITCH PROTEIN [... 25 1.5
ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN... 25 1.5
ref|NP_223895.1| RIBOSOME RECYCLING FACTOR (RIBOSOME RELEAS... 24 1.9
ref|NP_223858.1| GLYCINAMIDE RIBONUCLEOTIDE SYNTHETASE [Hel... 24 1.9
ref|NP_224176.1| TRANSCRIPTION-REPAIR COUPLING FACTOR [Heli... 24 2.5
ref|NP_224129.1| TYPE III DNA MODIFICATION ENZYME (METHYLTR... 24 2.5
ref|NP_223835.1| ELONGATION FACTOR G (EF-G) [Helicobacter p... 24 2.5
ref|NP_223830.1| putative [Helicobacter pylori J99] 24 2.5
ref|NP_223758.1| EXCINUCLEASE ABC SUBUNIT B [Helicobacter p... 24 2.5
ref|NP_223534.1| putative [Helicobacter pylori J99] 24 2.5
ref|NP_223310.1| putative [Helicobacter pylori J99] 24 2.5
ref|NP_223287.1| putative [Helicobacter pylori J99] 24 2.5
ref|NP_224100.1| putative [Helicobacter pylori J99] 23 3.3
ref|NP_223865.1| OXYGEN-INDEPENDENT COPROPORPHYRINOGEN III ... 23 3.3
ref|NP_223099.1| putative [Helicobacter pylori J99] 23 3.3
ref|NP_223854.1| POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE ... 23 4.3
ref|NP_223770.1| putative [Helicobacter pylori J99] 23 4.3
ref|NP_223636.1| DNA transfer protein [Helicobacter pylori ... 23 4.3
ref|NP_223478.1| EXCINUCLEASE ABC SUBUNIT C [Helicobacter p... 23 4.3
ref|NP_223449.1| TRIGGER FACTOR [Helicobacter pylori J99] 23 4.3
ref|NP_223275.1| putative [Helicobacter pylori J99] 23 4.3
ref|NP_223200.1| cag island protein [Helicobacter pylori J99] 23 4.3
ref|NP_222961.1| putative [Helicobacter pylori J99] 23 4.3
ref|NP_224102.1| putative PHOSPHATE PERMEASE [Helicobacter ... 23 5.6
ref|NP_224062.1| putative [Helicobacter pylori J99] 23 5.6
ref|NP_224040.1| DIMETHYLADENOSINE TRANSFERASE [Helicobacte... 23 5.6
ref|NP_223651.1| putative [Helicobacter pylori J99] 23 5.6
ref|NP_223630.1| septum formation protein [Helicobacter pyl... 23 5.6
ref|NP_223323.1| putative [Helicobacter pylori J99] 23 5.6
ref|NP_223283.1| DNA MISMATCH REPAIR PROTEIN [Helicobacter ... 23 5.6
ref|NP_223234.1| putative [Helicobacter pylori J99] 23 5.6
ref|NP_222812.1| methyl-accepting chemotaxis protein (MCP) ... 23 5.6
ref|NP_224029.1| lipopolysaccharide biosynthesis protein [H... 22 7.3
ref|NP_223371.1| putative abc transporter, ATP-binding prot... 22 7.3
ref|NP_223184.1| GTP-binding protein [Helicobacter pylori J99] 22 7.3
ref|NP_223168.1| putative transporter [Helicobacter pylori ... 22 7.3
ref|NP_223089.1| putative [Helicobacter pylori J99] 22 7.3
ref|NP_223053.1| ALPHA-KETOGLUTARATE PERMEASE [Helicobacter... 22 7.3
ref|NP_222870.1| putative [Helicobacter pylori J99] 22 7.3
ref|NP_222827.1| putative [Helicobacter pylori J99] 22 7.3
ref|NP_223841.1| 50S RIBOSOMAL PROTEIN L1 [Helicobacter pyl... 22 9.5
ref|NP_223774.1| BIOPOLYMER TRANSPORT PROTEIN [Helicobacter... 22 9.5
ref|NP_223706.1| histidine kinase [Helicobacter pylori J99] 22 9.5
ref|NP_223643.1| putative [Helicobacter pylori J99] 22 9.5
ref|NP_223353.1| short-chain fatty acids transporter [Helic... 22 9.5
ref|NP_223069.1| putative [Helicobacter pylori J99] 22 9.5
>ref|NP_223781.1| ATP synthase F0, subunit b [Helicobacter pylori J99]
Length = 171
Score = 313 bits (802), Expect = 2e-87
Identities = 165/171 (96%), Positives = 168/171 (97%)
Query: 1 MFVVKMVLGFLILLSPLCATGLDISQTDIIERSLNFLLFVGILWYFSAKKLRSFLRSKSL 60
MFVVKMVLGFLILLSPLCATGLDISQTDIIERSLNFLLFVGILWYF AK+LRSFL SKSL
Sbjct: 1 MFVVKMVLGFLILLSPLCATGLDISQTDIIERSLNFLLFVGILWYFLAKRLRSFLHSKSL 60
Query: 61 EISKRLEEIQAQLKVSKENKKKLLKELEQAKEKAELIVSDANKEAYMITQKYELQTKMDV 120
EISKRLEEIQAQLKVSKE+KKKLLKELEQAKEKAELI+SDANKEAY ITQKYELQTKMDV
Sbjct: 61 EISKRLEEIQAQLKVSKEHKKKLLKELEQAKEKAELIISDANKEAYTITQKYELQTKMDV 120
Query: 121 ENLIKNSKALMDLEVKKIKRELVESVFKDLRESKKVSFNAQDCVNILKQRL 171
ENLIKNSKALMDLEVKKIKRELVESVFKDLRESKKVSFNAQDCVNILKQRL
Sbjct: 121 ENLIKNSKALMDLEVKKIKRELVESVFKDLRESKKVSFNAQDCVNILKQRL 171
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 39.7 bits (91), Expect = 4e-05
Identities = 31/126 (24%), Positives = 62/126 (48%), Gaps = 14/126 (11%)
Query: 55 LRSKSLEISK-RLEEIQAQLKVSKENKKKLLKELEQAKEKAELIVSDANKEAYMITQKYE 113
L K EI + + E +A+ ++ EN+KKL ++LE +EK E + + N+ + ++ E
Sbjct: 131 LHQKEAEIERLKRENNEAESRLKAENEKKLNEKLELEREKIEKALHEKNELKF---KQQE 187
Query: 114 LQTKMDVENLIKNSKALMDLEVKKIKRELVESVFKDLRESK---------KVSFNAQDCV 164
Q +M + N +KN++ +L ++ + E+ E ++ K K DC+
Sbjct: 188 EQLEM-LRNELKNAQRKAELSSQQFQGEVQELAIEEFLRQKFPLDSVEEIKKGQRGGDCI 246
Query: 165 NILKQR 170
++ R
Sbjct: 247 QVVHTR 252
>ref|NP_223610.1| putative [Helicobacter pylori J99]
Length = 267
Score = 33.9 bits (76), Expect = 0.002
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 47 SAKKLRSFLRSKSLEISKRLEEIQAQLKVSKENKK--KLLKELEQAKEKAELIVSDANKE 104
S +K S ++S+ S +EE A+ + ++ N++ L E++ EK E++ K+
Sbjct: 76 SIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKHKSEKQEVL-----KK 130
Query: 105 AYMITQKYELQTKMDVENLIKNSKALMDLEVKKIKRELVE 144
+ +K L+ + VEN +KN K + KK K ELVE
Sbjct: 131 EMLELEKLALELENLVENEVKNIKETQQIIFKK-KEELVE 169
>ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 849
Score = 33.5 bits (75), Expect = 0.003
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 58 KSLEISKRLEEIQAQLKVSKENKKKLLKELEQ----AKEKAELIVSDANKE 104
KSLE SK+ +A LK +E +KK L++ EQ + K E + S NKE
Sbjct: 442 KSLEDSKQSIVDEAALKALEEERKKALEQAEQGCSIGENKEEAVASKENKE 492
>ref|NP_223971.1| putative [Helicobacter pylori J99]
Length = 376
Score = 31.2 bits (69), Expect = 0.016
Identities = 34/128 (26%), Positives = 62/128 (47%), Gaps = 18/128 (14%)
Query: 50 KLRSFLRSKS------LEISKRLEEIQAQLKVSKENKKKLLKELEQAKEKA------ELI 97
KL+S +++K L + KRLE ++++ KEN K +L+Q + A EL
Sbjct: 224 KLQSQIQAKEDALKTFLPLEKRLETLKSRFLCDKENLKSCANQLQQRYQNALIERDKELK 283
Query: 98 VSDANKEAY-MITQKYELQTK-MDVENLIKNSKALMDL-EVKKIKRELVESVFKDLRESK 154
+ NKE + +I YE K +++E L + S+ + L E + +++ + ++
Sbjct: 284 NAKNNKEKHALILANYEHTLKTLNIEFLSELSEQMAFLNETMALNAQVLALL---AQQQT 340
Query: 155 KVSFNAQD 162
K FN D
Sbjct: 341 KKPFNVSD 348
>ref|NP_223301.1| POLYNUCLEOTIDE ADENYLYLTRANSFERASE [Helicobacter pylori J99]
Length = 402
Score = 31.2 bits (69), Expect = 0.016
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 81 KKLLKELEQAKEKAELIVSDANKEAYMITQKY----ELQTKMDVENLIKNSKALMDLEVK 136
K LLK L + + ++EL K AY + ++Y EL T+ +ENL A ++LE++
Sbjct: 188 KDLLKHLSKERLQSELNKLLMGKNAYEVAKEYQEILELVTQEKIENLGFLKNAPLNLELR 247
Query: 137 KIKRELVESVFKDLRESKK 155
+ + ++LR KK
Sbjct: 248 LLGFFKHQKSLENLRYPKK 266
>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN
[Helicobacter pylori J99]
Length = 1167
Score = 30.4 bits (67), Expect = 0.027
Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 27/139 (19%)
Query: 25 SQTDIIERSLNFLLFVGILW----YFSAKKLRSFLRSKSLEISKRLEEIQAQLKVSKENK 80
S +++ ++LNF V Y K+ + L KSL+ +RLE+ A+ SK
Sbjct: 584 SNKELVGKALNFNKAVAEAKNTGNYDEVKQAQKDLE-KSLKKRERLEKDVAKNLESKSGN 642
Query: 81 KKLLKELEQAKEKAELIVSDANKEAYMITQKYELQTKMDVENLIKNSKALMDLE-VKKIK 139
K ++ QA + + I + NKEA ++++A+ + +K IK
Sbjct: 643 KNKMEAKSQANSQKDEIFALINKEAN------------------RDARAIAYAQNLKGIK 684
Query: 140 REL---VESVFKDLRESKK 155
REL +E++ KDL++ K
Sbjct: 685 RELSDKLENINKDLKDFSK 703
Score = 22.7 bits (47), Expect = 5.6
Identities = 11/48 (22%), Positives = 25/48 (51%), Gaps = 1/48 (2%)
Query: 113 ELQTKMDVENLIKNSKALMDLEVKKIKRELVESVFKDLRESKKVSFNA 160
E+Q K+D + + A +D + K ++E ++ +D ++ K +A
Sbjct: 396 EIQNKVDFMEFLAQNNAKLD-NLSKKEKEKFQNEIEDFQKDSKAYLDA 442
>ref|NP_223656.1| putative [Helicobacter pylori J99]
Length = 337
Score = 29.6 bits (65), Expect = 0.046
Identities = 18/81 (22%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 77 KENKKKLLKELEQAKEKAELIVSDANKEAYMIT---QKYELQTKMDVENLIKNSKALMDL 133
++ KK + ++ + + + + Y IT KY+L + +++ L+ N++ L +
Sbjct: 202 RQYKKDFEESTYDTRQTLSAMANMSGENDYKITWLKPKYQLHSSNNIKPLMSNTELLNMI 261
Query: 134 EVKKIKRELVESVFKDLRESK 154
E+ IK+E V ++ SK
Sbjct: 262 ELTNIKKEYVMGCNMEIDGSK 282
Score = 25.8 bits (55), Expect = 0.66
Identities = 15/65 (23%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 60 LEISKRLEEIQAQLKVSKENKKKLLKELEQAKEKAELI-----VSDANKEAYMITQKYEL 114
+E K + + K E+K++L K++++ KEKA+++ + + + K +L
Sbjct: 87 VEEEKHKQALNLINKEDTEDKEELAKKIKEIKEKAKVLRQKFMAFEMKEHSKEFPNKKQL 146
Query: 115 QTKMD 119
QT ++
Sbjct: 147 QTMLE 151
>ref|NP_222978.1| putative [Helicobacter pylori J99]
Length = 177
Score = 29.3 bits (64), Expect = 0.060
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 34 LNFLLFVGILWYFSAKKLRSFLRSKSLEISKRLEEIQ-AQLKVSKENKKKLLKELEQ 89
L+F+L G++W+ R+ + SL I +RL + ++L+V + KL+KE ++
Sbjct: 27 LSFVLIGGLVWFMHNAIKRAQDNASSLTIQERLYRHEISRLQVKTDETLKLIKEAKK 83
>ref|NP_222831.1| putative [Helicobacter pylori J99]
Length = 412
Score = 29.3 bits (64), Expect = 0.060
Identities = 20/92 (21%), Positives = 40/92 (42%)
Query: 70 QAQLKVSKENKKKLLKELEQAKEKAELIVSDANKEAYMITQKYELQTKMDVENLIKNSKA 129
Q +L+ K+ K +LEQ ++K E NK + Q+ + K +E KA
Sbjct: 126 QIELEQEKKEANKSGIKLEQERQKTEQERQKTNKSEIELEQERQKTNKSGIELANSQIKA 185
Query: 130 LMDLEVKKIKRELVESVFKDLRESKKVSFNAQ 161
+ + + +++ +L + K+ + N Q
Sbjct: 186 EQERQKTEQEKQKANKSEIELEQQKQKTINTQ 217
>ref|NP_223640.1| Component of conjugal plasmid transfer system [Helicobacter pylori
J99]
Length = 511
Score = 28.1 bits (61), Expect = 0.13
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 8/103 (7%)
Query: 52 RSFLRSKSLEISKRLEEIQAQLKVSKENKKKLLKELEQAKEK---AELIVSDAN----KE 104
R + +S+ KRL E +K + N + Q K EL+ N KE
Sbjct: 367 RKYQKSRDFMRLKRLLEQDEAMKAKRNNMHLIEDTTPQPKNAISVTELLAQIKNQTPSKE 426
Query: 105 AYMITQKYELQTKMDVENLIKNSKALMDLEVKKIKRELVESVF 147
+ ++ E++T +V+N+IK K L K K+ +++ +
Sbjct: 427 CRALNEE-EVKTLEEVKNIIKTPKPLQKDLKKNAKKHTIKTQY 468
>ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99]
Length = 856
Score = 28.1 bits (61), Expect = 0.13
Identities = 17/71 (23%), Positives = 37/71 (51%), Gaps = 2/71 (2%)
Query: 66 LEEIQAQLKVSKENKKKLLKELEQAKEKAELIVSDANKEAYMITQKYELQTKMDVENLIK 125
L+E + QL+ EN+K++ KE+ + K + E + +A E + Y+ +++ + +
Sbjct: 448 LKEEKIQLEAQFENEKEVFKEISRLKMEMEGLKKEA--ERFKRNGDYQQAAEIEYSKIPE 505
Query: 126 NSKALMDLEVK 136
K +L+ K
Sbjct: 506 KEKKEKELQHK 516
Score = 23.1 bits (48), Expect = 4.3
Identities = 14/47 (29%), Positives = 29/47 (60%), Gaps = 1/47 (2%)
Query: 58 KSLEISK-RLEEIQAQLKVSKENKKKLLKELEQAKEKAELIVSDANK 103
K L+ K R+ I+++L+ ++K LK + +A ++ + +SD+NK
Sbjct: 550 KMLQSEKNRVLNIESELQKRVVGQEKALKAIAKAIKRNKAGLSDSNK 596
>ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [Helicobacter pylori J99]
Length = 681
Score = 28.1 bits (61), Expect = 0.13
Identities = 26/89 (29%), Positives = 42/89 (46%), Gaps = 16/89 (17%)
Query: 64 KRLEEIQAQLKVSKENKKKLLKELEQAKEKAELIVSDANKEAYMITQKYELQTKMDVENL 123
KR+E++Q K + KK+ LK LE ++ E ++ +T Y+ QT D
Sbjct: 273 KRVEKVQESFKALDKAKKEWLKALEAPIDEKE------DELVRSLTLAYKRQTLKD---- 322
Query: 124 IKNSKALMDLE-VKKIKRELVESVFKDLR 151
L DLE K+ ELV+++ L+
Sbjct: 323 -----RLYDLEPTSKLINELVKTMETTLK 346
>ref|NP_224151.1| putative [Helicobacter pylori J99]
Length = 307
Score = 27.7 bits (60), Expect = 0.17
Identities = 16/54 (29%), Positives = 30/54 (54%), Gaps = 3/54 (5%)
Query: 58 KSLEISKRLEEIQAQLKV---SKENKKKLLKELEQAKEKAELIVSDANKEAYMI 108
++L + R++++ + V ++ L KELEQAKE ++ D E++MI
Sbjct: 16 QALSYNIRMKDLNKTIGVFVRPTHHQNALFKELEQAKEWVLTLLEDEGFESFMI 69
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 27.7 bits (60), Expect = 0.17
Identities = 27/105 (25%), Positives = 49/105 (45%), Gaps = 8/105 (7%)
Query: 61 EISKRLEEIQAQLKVSKENKKKLLKELEQAKEKAELIVSDANKEAYMITQKYELQTKMDV 120
E K LEE + +K K+ + E E+ +E +L+ +A K + K ++ +D
Sbjct: 823 EARKLLEEAKESVKAYKDCVSRARNEKEK-QECEKLLTPEARK--LLEESKKSVKAYLDC 879
Query: 121 ENLIKNSKALMDLEVKKIKRELVESVFKDLRESKKVSFNAQDCVN 165
+ KN + E K+ ++ L K L E+K+ +DCV+
Sbjct: 880 VSKAKN-----EAERKECEKLLTPEARKLLEEAKESVKAYKDCVS 919
Score = 27.3 bits (59), Expect = 0.23
Identities = 30/108 (27%), Positives = 47/108 (42%), Gaps = 8/108 (7%)
Query: 61 EISKRLEEIQAQLKVSKENKKKLLKELEQAKEKAELIVSDANKEAYMITQKYELQTKMDV 120
E K LEE + +K + K E E+ KE +L+ +A K + K ++ D
Sbjct: 785 EARKLLEESKKSVKAYLDCVSKAKNEAER-KECEKLLTPEARK--LLEEAKESVKAYKDC 841
Query: 121 ENLIKNSKALMDLEVKKIKRELVESVFKDLRESKKVSFNAQDCVNILK 168
+ +N K E ++ ++ L K L ESKK DCV+ K
Sbjct: 842 VSRARNEK-----EKQECEKLLTPEARKLLEESKKSVKAYLDCVSKAK 884
Score = 26.9 bits (58), Expect = 0.30
Identities = 27/105 (25%), Positives = 49/105 (45%), Gaps = 8/105 (7%)
Query: 61 EISKRLEEIQAQLKVSKENKKKLLKELEQAKEKAELIVSDANKEAYMITQKYELQTKMDV 120
E K LEE + +K K+ + E E+ +E +L+ +A K + K ++ +D
Sbjct: 747 EARKLLEEAKKSVKAYKDCVLRARNEKEK-QECEKLLTPEARK--LLEESKKSVKAYLDC 803
Query: 121 ENLIKNSKALMDLEVKKIKRELVESVFKDLRESKKVSFNAQDCVN 165
+ KN + E K+ ++ L K L E+K+ +DCV+
Sbjct: 804 VSKAKN-----EAERKECEKLLTPEARKLLEEAKESVKAYKDCVS 843
Score = 26.9 bits (58), Expect = 0.30
Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 12/92 (13%)
Query: 63 SKRLEEIQAQLKVSKENKKKLLKELEQAKEKAELIVSDANKEAYMITQKYELQTKMDVEN 122
S ++EIQ + +K+N+ + L QA E + + ++EA + +E
Sbjct: 1343 SDLIQEIQNKKAQNKQNQLSKTERLHQASECLDNLDDPTDQEA----------IEQCLEG 1392
Query: 123 LIKNSKALMDLEVKKIKRELVESVFKDLRESK 154
L + +AL+ L +K+ + + V+ ++ DLR K
Sbjct: 1393 LSDSERALI-LGIKR-QADEVDRIYSDLRSRK 1422
Score = 26.6 bits (57), Expect = 0.39
Identities = 35/127 (27%), Positives = 54/127 (41%), Gaps = 23/127 (18%)
Query: 61 EISKRLEEIQAQLK-----VSKENKKKLLKELE-----QAKEKAELIVSDANKEAYMITQ 110
E K+LEE + ++ VSK + KE E +AK+ E D K A +
Sbjct: 640 EAKKKLEEAKKSVRAYLDCVSKAKNEAERKECEKLLTPEAKKLLENQALDCLKNAKTDEE 699
Query: 111 KYE--------LQTKMDVENLIKN-----SKALMDLEVKKIKRELVESVFKDLRESKKVS 157
+ E LQ K+ + ++ SKA + E K+ ++ L K L E+KK
Sbjct: 700 RKECLKDLPKDLQKKVLAKESVRVYLDCVSKAKNEAERKECEKLLTPEARKLLEEAKKSV 759
Query: 158 FNAQDCV 164
+DCV
Sbjct: 760 KAYKDCV 766
Score = 25.4 bits (54), Expect = 0.86
Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 7/107 (6%)
Query: 67 EEIQAQLKVSKENKKKLLKELEQAKEKAELIVSDANKEAYMITQKYELQTKMDVENLIKN 126
+E Q K+ +KLL+ QA + + ++A K+ + +LQ K+ + +K
Sbjct: 1071 KEKQECEKLLTPEARKLLEN--QALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVKA 1128
Query: 127 -----SKALMDLEVKKIKRELVESVFKDLRESKKVSFNAQDCVNILK 168
S+A + E K+ ++ L K L ESKK DCV+ K
Sbjct: 1129 YLDCVSRARNEKEKKECEKLLTPEARKLLEESKKSVKAYLDCVSKAK 1175
Score = 24.6 bits (52), Expect = 1.5
Identities = 27/108 (25%), Positives = 53/108 (49%), Gaps = 13/108 (12%)
Query: 67 EEIQAQLKVSKENKKKLLKELEQAKEKAE------LIVSDANKEAYMITQKYELQTKMDV 120
+++Q+ + ++KE+ K QAK +AE L+ +A K ++ ++ + K +
Sbjct: 563 KDLQSDI-LAKESLKAYKDCASQAKTEAEKKECEKLLTPEAKK---LLEEEAKESVKAYL 618
Query: 121 ENLIKNSKALMDLEVKKIKRELVESVFKDLRESKKVSFNAQDCVNILK 168
+ + S+A + E K+ ++ L K L E+KK DCV+ K
Sbjct: 619 DCV---SQAKTEAEKKECEKLLTPEAKKKLEEAKKSVRAYLDCVSKAK 663
Score = 24.6 bits (52), Expect = 1.5
Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 25/129 (19%)
Query: 61 EISKRLEEIQAQLKVSKENKKKLLKELEQAKEKAELIVSDANKEAY------MITQKYEL 114
E K LEE + +K K+ + E E+ +E +L+ +A K + K E
Sbjct: 899 EARKLLEEAKESVKAYKDCVSRARNEKEK-QECEKLLTPEAKKLLENQALDCLKNAKTEA 957
Query: 115 QTKMDVENLIKN------------------SKALMDLEVKKIKRELVESVFKDLRESKKV 156
+ K V++L K+ SKA + E K+ ++ L K L E+K+
Sbjct: 958 EKKRCVKDLPKDLQKKVLAKESVRVYLDCVSKAKNEAERKECEKLLTPEARKLLEEAKES 1017
Query: 157 SFNAQDCVN 165
+DCV+
Sbjct: 1018 VKAYKDCVS 1026
Score = 23.9 bits (50), Expect = 2.5
Identities = 28/113 (24%), Positives = 51/113 (44%), Gaps = 15/113 (13%)
Query: 58 KSLEISKRLEEIQAQLKVSK--ENKKKLLKEL-EQAKEKAELIVSDANKEAYMITQKYEL 114
K LE+ K L+E + +K +K K + LK L ++A E+ + D K A
Sbjct: 429 KELELQKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNA--------- 479
Query: 115 QTKMDVENLIKNSKALMDLEVKKIKRELVESVFKDLRESKKVSFNAQDCVNIL 167
+T + + +KN DL+ K++ ++ +KD + Q+C +L
Sbjct: 480 KTDEERKECLKNIP--QDLQ-KELLADMSVKAYKDCVSRARNEKEKQECEKLL 529
Score = 23.1 bits (48), Expect = 4.3
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 14/100 (14%)
Query: 67 EEIQAQLK-VSKENKKKLLKELEQAKEKAELIVSDANKEAYMITQKYELQTKMDVENLIK 125
E ++A L VS+ +K KE E+ L+ +A K + K ++ +D + K
Sbjct: 1124 ESVKAYLDCVSRARNEKEKKECEK------LLTPEARK--LLEESKKSVKAYLDCVSKAK 1175
Query: 126 NSKALMDLEVKKIKRELVESVFKDLRESKKVSFNAQDCVN 165
N + E K+ ++ L K L E+K+ +DCV+
Sbjct: 1176 N-----EAEKKECEKLLTPEARKLLEEAKESVKAYKDCVS 1210
Score = 22.7 bits (47), Expect = 5.6
Identities = 20/104 (19%), Positives = 44/104 (42%), Gaps = 8/104 (7%)
Query: 52 RSFLRSKSLEISKRLEEIQAQLKVSKENKKKLLKELEQAKEKAELIVSDANKEAYMITQK 111
R L +++L+ K + ++ KK+ +K+L + +K L +++
Sbjct: 1085 RKLLENQALDCLKNAK--------TEAEKKRCVKDLPKDLQKKVLAKESVKAYLDCVSRA 1136
Query: 112 YELQTKMDVENLIKNSKALMDLEVKKIKRELVESVFKDLRESKK 155
+ K + E L+ + E KK + ++ V K E++K
Sbjct: 1137 RNEKEKKECEKLLTPEARKLLEESKKSVKAYLDCVSKAKNEAEK 1180
>ref|NP_223637.1| topoisomerase I [Helicobacter pylori J99]
Length = 425
Score = 27.3 bits (59), Expect = 0.23
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 54 FLRSKSLEISKRLE---EIQAQLKVSKENKKKLLKELEQAKEKAELIVSDANKEAYMITQ 110
F+ ++E++K EI+ K+ + + Q K+K I +D ++E Y I
Sbjct: 34 FVELVNIEVNKEFNPIFEIKKSTDKKKDRSTHINHMINQCKDKVVYIATDPDREGYGIGY 93
Query: 111 KY 112
K+
Sbjct: 94 KF 95
>ref|NP_222757.1| DNA transformation compentancy [Helicobacter pylori J99]
Length = 328
Score = 26.9 bits (58), Expect = 0.30
Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 14/113 (12%)
Query: 11 LILLSPLCATGLDISQTDIIERSLNFLLFVGILWYFSAK--KLRSFLRSKSLEIS---KR 65
++L+ PL G+D + + I F +V + S+K L+ F+ K+ + K
Sbjct: 111 ILLIKPL-QIGVDSNISVIDSEGKIFSFYVFSTTFTSSKHPNLQVFIEDKNYYTNAFIKP 169
Query: 66 LEEIQAQL-----KVSKENKKKLLKELEQAKEKAE--LIVSDANKEAYMITQK 111
+E Q + K +++N K L +E E+ KEK E +I+ D N A I +K
Sbjct: 170 QKENQENMSENAPKDAQKNNKPLKEEKEETKEKEEETIIIGD-NTNAMKIIKK 221
>ref|NP_224188.1| putative [Helicobacter pylori J99]
Length = 333
Score = 26.6 bits (57), Expect = 0.39
Identities = 27/111 (24%), Positives = 50/111 (44%), Gaps = 18/111 (16%)
Query: 53 SFLRSKSLEISKRLEEIQAQLKVSKENKKKLLKELEQA------------KEKAELIVSD 100
SFL + I + +E+I AQ K + + K L ++++ K+K +
Sbjct: 137 SFLSFQEKTIVEVMEDIDAQAKALEVDASKKLAKMQETLDFIKERLKNVKKKKGVELFHK 196
Query: 101 ANKEAYMITQKYELQTKMDVENL----IKNSKALMDLEVKKIKRELVESVF 147
ANK + ++ K ++N +K +A D+ V+KI +E E +F
Sbjct: 197 ANKISGHQALDSDILEKGGIDNFGLKYVKFGRA--DISVEKIVKENPEIIF 245
>ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobacter pylori J99]
Length = 946
Score = 26.6 bits (57), Expect = 0.39
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 37 LLFVG-----ILWYFSAKKLRSFLRSKSLEISKRLEEIQAQLKVSKENKKKLLKELEQAK 91
LLF G IL KK + ++ + L+ K L++ L+ KE + +LKELE
Sbjct: 29 LLFKGANPSEILTLTFTKKATAEMKERILDYLKILQK--ENLESEKEKSQNILKELE--- 83
Query: 92 EKAELIVSDANKEAYMITQKY 112
EK L S A I Q++
Sbjct: 84 EKYHLDPSLVRNNAQKIYQRF 104
>ref|NP_223759.1| putative [Helicobacter pylori J99]
Length = 267
Score = 26.6 bits (57), Expect = 0.39
Identities = 24/107 (22%), Positives = 45/107 (41%), Gaps = 8/107 (7%)
Query: 59 SLEISKRLEEIQAQLKVSKENKKKLLKELEQAKEKAELIVSDANKEAYMITQKYELQTKM 118
SL+ K EI + L+ S E + L+ ++ E S+ N + Q+
Sbjct: 60 SLDFFKNANEIDSSLRNSIEWLTNAGESLKLKMKEYERFFSEFNTSMHANEQEVTNTLNA 119
Query: 119 DVENLIKNSKALMDLEVKKIKRELVESVFKDLRESKKVSFNAQDCVN 165
+ EN+ E+KK++ +L+E+ + L + A+D N
Sbjct: 120 NAENIKS--------EIKKLENQLIETTTRLLTSYQIFLNQARDNAN 158
>ref|NP_223642.1| putative [Helicobacter pylori J99]
Length = 195
Score = 26.6 bits (57), Expect = 0.39
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 14/95 (14%)
Query: 76 SKENKKKLLKELEQAKEKAELIVSDAN-------KEAYMITQKYEL---QTKMDVENLI- 124
SK+ K +K+L AK+K E+I + N +E ++ K +L QT D + +
Sbjct: 29 SKDMMKAFMKDLAFAKDKNEVIKAQDNELVKEFMQELSSLSFKEQLEFYQTNRDYDPSLD 88
Query: 125 --KNSKALMDLEVKKIKRELVESVFKDLRESKKVS 157
+NS L+D ++ L + +RE K+ S
Sbjct: 89 NDENSSELLDAFTSSLE-NLEKQKINPIREQKRES 122
>ref|NP_223531.1| putative [Helicobacter pylori J99]
Length = 155
Score = 26.6 bits (57), Expect = 0.39
Identities = 22/99 (22%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
Query: 64 KRLEEIQAQLKVSKENKKKLLKELEQAKEKAELIVSDANKEAYMITQKYELQTKMDVENL 123
K+ +++ + +KE +LLKE+ +K A ++ + +K +N
Sbjct: 14 KQYKKLGLTNEQAKERTNELLKEIPNILQKGVKEEDRPGYAAIILNNSKVILSKFKGDNE 73
Query: 124 IKNSKALMDLEV-KKIKREL--VESVFKDLRESKKVSFN 159
+KN + EV K+ REL + ++ D R+ S +
Sbjct: 74 LKNHYMITSFEVDDKVLRELETIATLSNDYRDGINYSIS 112
>ref|NP_223520.1| putative [Helicobacter pylori J99]
Length = 153
Score = 26.2 bits (56), Expect = 0.50
Identities = 32/137 (23%), Positives = 61/137 (44%), Gaps = 25/137 (18%)
Query: 49 KKLRSFLRSKSLEISKRLEEIQAQLKVSKENKK---------------KLLKELEQAKEK 93
K+++ LR K + K L++ Q K+ KEN + K L+E+E +
Sbjct: 27 KQVQEILRKKK-SVLKGLKQEICQKKLEKENFRSNKETQNTEEDVIFPKALEEVEVYAKD 85
Query: 94 AELIVSDANKEAYMITQKYELQTKMDVENLIKNSKALMDLEVKKIKRELVESVFKDLRES 153
++I++ K + + ++ + L+KN + D E +K EL +DL +
Sbjct: 86 NQVIMAKPCKRLFNEGLYLQYRSVLRENRLLKNHLSKKDFENSLLKIEL-----RDLHKE 140
Query: 154 KKVSFNAQDCVNILKQR 170
K+ + Q N+LK +
Sbjct: 141 IKL-YQVQ---NLLKDK 153
>ref|NP_223195.1| cag island protein [Helicobacter pylori J99]
Length = 522
Score = 26.2 bits (56), Expect = 0.50
Identities = 27/97 (27%), Positives = 44/97 (44%), Gaps = 14/97 (14%)
Query: 52 RSFLRSKSLEIS----KRLEEIQAQLKVSKENKKKLLKELEQAKE--KAELIVSDANKEA 105
+ FL++K L + K LEE + L+ KE K++ K + +E K E + AN E
Sbjct: 123 QEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANLE- 181
Query: 106 YMITQKYELQTKMDVENLIKNSKALMDLEVKKIKREL 142
L M + N+K L +L ++ + EL
Sbjct: 182 -------NLTNAMSNPQNLSNNKNLSELIKQQRENEL 211
>ref|NP_223646.1| putative [Helicobacter pylori J99]
Length = 150
Score = 25.8 bits (55), Expect = 0.66
Identities = 22/97 (22%), Positives = 46/97 (46%), Gaps = 13/97 (13%)
Query: 61 EISKRLEEIQAQLKVSKENKKKLLKELEQAKEKAELIVSDANKEAYMITQKYELQTKMDV 120
++ ++++E++ ++++K+N K + +EQ L Y+ K++ +T +D
Sbjct: 7 KLPEKIKELENSIEITKKNIAKYTRLVEQKPSYPRL--------EYLQALKWDHKTLID- 57
Query: 121 ENLIKNSKALMDLEVKKIKRELVESVFKDLRESKKVS 157
+L K SK D K + V K+L K+ S
Sbjct: 58 -DLAKMSK---DRNYKPAFNPKSKEVLKNLNAEKRAS 90
>ref|NP_223189.1| cag island protein [Helicobacter pylori J99]
Length = 481
Score = 25.8 bits (55), Expect = 0.66
Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 19/105 (18%)
Query: 58 KSLEISKRLEEIQAQLKVSKENKKKLLKELEQAKEKAELIVSDANKEAYMITQKYELQTK 117
K LE K+L+ ++A+LK K ++++ K SD+++ +I +K
Sbjct: 323 KDLENQKKLKALEAELKKKNTKKPRVVEVPIPPK------TSDSDETMRVIKEK------ 370
Query: 118 MDVENLIKNSKALMDLEVKKIKRELVESVFKDLRESKKVSFNAQD 162
+N L+ + IKR ++ + SKK N +D
Sbjct: 371 -------ENYNGLLVDKETTIKRSYKGTLISENSYSKKTPINLED 408
>ref|NP_224196.1| putative [Helicobacter pylori J99]
Length = 164
Score = 25.4 bits (54), Expect = 0.86
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 43 LWYFSAKKLRSFLRSKSLEISKRLEEIQAQ-LKVSKENK----KKLLKELEQAKEKAELI 97
LW KK+ S+ + KR+E + Q + + ENK ++L K+L+ + ++ +
Sbjct: 40 LWQKLGKKIAIITGRTSIMVKKRMESLGVQFVFMGVENKNAVIERLKKDLQLSAQEIACV 99
Query: 98 VSDAN 102
D N
Sbjct: 100 GDDYN 104
>ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 991
Score = 25.4 bits (54), Expect = 0.86
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 46 FSAKKLRSFLRSKSLEISKRLEEIQAQLKVSKENKKK 82
+ + ++ + KS +I K+LEE + QLK E+ K+
Sbjct: 676 YEREDIQGLISDKSQKIKKKLEETRDQLKSLCESVKE 712
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 25.4 bits (54), Expect = 0.86
Identities = 27/104 (25%), Positives = 46/104 (43%), Gaps = 22/104 (21%)
Query: 61 EISKRLEEI-----QAQLKVSKENKKKLLKELEQAKEKAELIVSDANKEAYMITQKYELQ 115
E K+LE Q K+ K+ + ++A E+ + I+ T++ Q
Sbjct: 294 EFKKQLESYFDTSYQESTDTIKKMKEDYTNKTDEALERLDEIIK---------TEQNNSQ 344
Query: 116 TKMDVENLIKNSKALMDLEVKKIKRELVESVFKDLRESKKVSFN 159
TK+D ENL K +++ KIK + + K SK++S N
Sbjct: 345 TKLDTENL----KRIIETLRSKIKANQQKMIDK----SKEMSRN 380
Score = 25.4 bits (54), Expect = 0.86
Identities = 21/88 (23%), Positives = 37/88 (41%), Gaps = 2/88 (2%)
Query: 73 LKVSKENKKKLLKELEQAKEKAELIVSDANKEAYMITQKYELQTKMDVENLIKNSKALMD 132
LK+ NK+ ++L ++ K + E + + + E IKN +L
Sbjct: 87 LKIEVYNKQFKEEQLRNSQVKGIFTLGKKTNENLEKIESKKESINKENEKKIKNEASLQV 146
Query: 133 LEVKKIKRE--LVESVFKDLRESKKVSF 158
L KK K E +S +K+L + + F
Sbjct: 147 LTQKKEKEEKDFTDSCWKNLYKKNEEEF 174
Score = 22.3 bits (46), Expect = 7.3
Identities = 30/127 (23%), Positives = 52/127 (40%), Gaps = 26/127 (20%)
Query: 39 FVGILWYF----SAKKLRSFLRSKSLEISKRLEEIQAQL--KVSKENKKKLLKELEQAKE 92
F+ L+Y+ + K ++K L I + + + + VS K + + +E+
Sbjct: 533 FITFLYYYHLAKGSLKENDISKNKVLVIDDPISSLDSNILFMVSVLVKDLMKETMEEKTN 592
Query: 93 KAELIVSDANKEAYM-ITQKYELQT-------------------KMDVENLIKNSKALMD 132
++I+ N Y IT +Y+L+ K EN IKNS L+
Sbjct: 593 IKQIIILTHNTYFYKEITLEYDLKRYQGKYSFWIIKKDNNVSKIKGYKENPIKNSYELLW 652
Query: 133 LEVKKIK 139
EVK+ K
Sbjct: 653 QEVKQAK 659
>ref|NP_223327.1| putative [Helicobacter pylori J99]
Length = 171
Score = 25.4 bits (54), Expect = 0.86
Identities = 23/100 (23%), Positives = 48/100 (48%), Gaps = 21/100 (21%)
Query: 74 KVSKENKKKLLKELEQAKEKAELIVSDANK-------------EAYMITQKYELQTKMDV 120
+VSK +KL+ L K +A L AN+ EAY I+ + + +
Sbjct: 8 RVSKTKSQKLIHSLTTQKNRAFLKKISANEMLLELEKGAFKKNEAYFISDEEDKNYVLVP 67
Query: 121 ENLI----KNSKALMDLEVK-KIKRELVESV---FKDLRE 152
+N+I +N++ + ++ +++R+++ F+D+RE
Sbjct: 68 DNVISLLAENARKAFEARLRAELERDIITQAPIDFEDVRE 107
>ref|NP_224083.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 678
Score = 25.0 bits (53), Expect = 1.1
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 49 KKLRSFLRSKSLEISKR---LEEIQAQLKVSKENK 80
+K+RSFL K L + KR + ++ LK NK
Sbjct: 277 RKIRSFLERKQLPLEKRESIISSLEPLLKNENNNK 311
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 25.0 bits (53), Expect = 1.1
Identities = 26/102 (25%), Positives = 49/102 (47%), Gaps = 11/102 (10%)
Query: 50 KLRSFLRSKSLEISKRLEEIQAQLKVSKENKKKL------LKELEQAKEKAELIVSDANK 103
KLR+ ++S+ + +E + K N KL LK+LE +++ +I +
Sbjct: 2035 KLRAEIKSEESKYKAFNKEHYFNEESLKNNASKLDYLKQELKDLETL-QRSVIIPTHTEI 2093
Query: 104 EAYMI----TQKYELQTKMDVENLIKNSKALMDLEVKKIKRE 141
+ Y + ++ YEL +VE L +N+ +L KK+K +
Sbjct: 2094 KLYDLKNEESKDYELIKVKEVEPLKENASMSEELTHKKLKEQ 2135
>ref|NP_222979.1| putative [Helicobacter pylori J99]
Length = 179
Score = 25.0 bits (53), Expect = 1.1
Identities = 21/76 (27%), Positives = 32/76 (41%), Gaps = 9/76 (11%)
Query: 14 LSPLCATGLDISQTDIIERSLNFLLFVGILWYFSAKKLRSFLRSKSLEISKRLEEIQAQL 73
+ PL + LD Q+ + + L+F+G+ FL LE+ K L E
Sbjct: 1 MKPLHFSHLDREQSGDVGFIIKNLIFLGVFSLLGWLNTEYFLWPSMLELKKILLE----- 55
Query: 74 KVSKENKKKLLKELEQ 89
EN+KK + E Q
Sbjct: 56 ----ENRKKSVLEYAQ 67
>ref|NP_223249.1| putative FLAGELLAR MOTOR SWITCH PROTEIN [Helicobacter pylori J99]
Length = 123
Score = 24.6 bits (52), Expect = 1.5
Identities = 20/58 (34%), Positives = 28/58 (47%), Gaps = 14/58 (24%)
Query: 78 ENKKKLLKELEQAKEKAELIVSDANKEAYMITQKYELQTKMDVENLIKNSKALMDLEV 135
E + LK E+ KEKA NKE EL+ +E LI + K L+D+E+
Sbjct: 3 ETEANKLKIAEKEKEKA-------NKER-------ELELSTYLEELICDYKNLLDMEI 46
>ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN 3 (HAP3) [Helicobacter
pylori J99]
Length = 828
Score = 24.6 bits (52), Expect = 1.5
Identities = 13/43 (30%), Positives = 25/43 (57%), Gaps = 2/43 (4%)
Query: 76 SKENKKKLLKELEQAKEKAELIVSDANKEAYMITQKYELQTKM 118
SKE+K++ ++ L+QAK+ + +++ K +I TKM
Sbjct: 626 SKESKERFIELLKQAKDNLSINLNEEGK--VIIQDNMHSNTKM 666
>ref|NP_223895.1| RIBOSOME RECYCLING FACTOR (RIBOSOME RELEASING FACTOR) (RRF)
[Helicobacter pylori J99]
Length = 185
Score = 24.3 bits (51), Expect = 1.9
Identities = 19/80 (23%), Positives = 42/80 (51%), Gaps = 3/80 (3%)
Query: 80 KKKLLKELEQAKEKAELIVSDANKEAYMITQKYELQTKMDVENLIKNSKALMDLEVKKIK 139
+K LLKE+E++ ++A + V + N + I + T + + K++KA+ + ++
Sbjct: 71 EKNLLKEIERSIQEANIGV-NPNNDGETIKLFFPPMTTEQRKLIAKDAKAMGEKAKVAVR 129
Query: 140 --RELVESVFKDLRESKKVS 157
R+ + K L + K++S
Sbjct: 130 NTRQDANNKVKKLEKDKEIS 149
>ref|NP_223858.1| GLYCINAMIDE RIBONUCLEOTIDE SYNTHETASE [Helicobacter pylori J99]
Length = 424
Score = 24.3 bits (51), Expect = 1.9
Identities = 24/106 (22%), Positives = 47/106 (43%), Gaps = 5/106 (4%)
Query: 70 QAQLKVSKENKKKLLKELEQAKEKAELIVSDANKEAYMITQKYELQTKMDVENLIKNSKA 129
Q L + E ++ L+ L + EKA ++V A+KEA + E IK++
Sbjct: 66 QIHLAIISE-EEPLILGLTEMLEKAGILVFGASKEAAKLEASKSYMKAFVKECGIKSASY 124
Query: 130 LMDLEVKK----IKRELVESVFKDLRESKKVSFNAQDCVNILKQRL 171
++K+ I+ V K L ++ + + ++ + IL+ L
Sbjct: 125 FETNDLKEALNYIQNASFPLVIKALNKNTSIVHHQEEALKILEDAL 170
>ref|NP_224176.1| TRANSCRIPTION-REPAIR COUPLING FACTOR [Helicobacter pylori J99]
Length = 1001
Score = 23.9 bits (50), Expect = 2.5
Identities = 22/72 (30%), Positives = 34/72 (46%), Gaps = 2/72 (2%)
Query: 50 KLRSFLRSKSLEISKRLEEIQAQLKVSKENKKKL-LKELEQAKEKAEL-IVSDANKEAYM 107
KL++ +R+K LEI+ ++ E+ A+ + K L ELE K A SD K
Sbjct: 436 KLKAKVRAKLLEIAGKIIELAAERNLILGKKMDTHLAELEIFKSHAGFEYTSDQEKAIAE 495
Query: 108 ITQKYELQTKMD 119
I++ MD
Sbjct: 496 ISRDLSSHRVMD 507
>ref|NP_224129.1| TYPE III DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 641
Score = 23.9 bits (50), Expect = 2.5
Identities = 26/111 (23%), Positives = 48/111 (42%), Gaps = 18/111 (16%)
Query: 66 LEEIQAQLKVSKENKK--KLLKELEQAKEKAELIVSDANKEAYMITQKYELQTKM----- 118
L+ + ++ +++ KK K+LK L ++ K LI D ++ Q Y + KM
Sbjct: 60 LDFVGKKIALNQAFKKNHKILKPLNESTSKHILIKGDNLDALKILKQSYSEKIKMIYIDP 119
Query: 119 ----DVENLI-------KNSKALMDLEVKKIKRELVESVFKDLRESKKVSF 158
+N I N + L L+ K K + ++++F S +SF
Sbjct: 120 PYNTKNDNFIYGDDFSQSNEEVLKTLDYSKEKLDYIKNLFGSKCHSGWLSF 170
>ref|NP_223835.1| ELONGATION FACTOR G (EF-G) [Helicobacter pylori J99]
Length = 692
Score = 23.9 bits (50), Expect = 2.5
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 87 LEQAKEKAELIVSDANKEAYMITQKYELQTKMDVENLIKNSK 128
LE+AK+ E +V ++ + +KY ++D+E + K K
Sbjct: 205 LEKAKQYREKLVEAVAEQDEALMEKYLGGEELDIEEIKKGIK 246
>ref|NP_223830.1| putative [Helicobacter pylori J99]
Length = 383
Score = 23.9 bits (50), Expect = 2.5
Identities = 23/116 (19%), Positives = 51/116 (43%), Gaps = 12/116 (10%)
Query: 48 AKKLRSFLRSKSLEISKRLEEIQAQLKVSKENKKKLLKELEQAKEKAELIVSDANKEAYM 107
A+K R ++ + LE+ + + + K+ ++ ++ EQ K+K E +E
Sbjct: 106 AQKEAENARDRANKSGIELEQEEQKTEQEKQKTEQEKQKTEQEKQKTE-------QEKQK 158
Query: 108 ITQKYELQTKMDVENLIKNSKALMDLEVKKIK-----RELVESVFKDLRESKKVSF 158
Q+ + + ++ N IK + E +K K ++LV ++ +E+ F
Sbjct: 159 TEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDLVNKAEQNCQENHNQFF 214
Score = 21.9 bits (45), Expect = 9.5
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 85 KELEQAKEKAELIVSDANKEAYMITQKYELQTKMDVENLIKNSKALMDLEVKKIKRE 141
KE+ QA+++AE ANK + Q+ E +T+ + + + K + E +K ++E
Sbjct: 101 KEVAQAQKEAENARDRANKSGIELEQE-EQKTEQEKQK-TEQEKQKTEQEKQKTEQE 155
>ref|NP_223758.1| EXCINUCLEASE ABC SUBUNIT B [Helicobacter pylori J99]
Length = 658
Score = 23.9 bits (50), Expect = 2.5
Identities = 22/98 (22%), Positives = 46/98 (46%), Gaps = 10/98 (10%)
Query: 63 SKRLEEIQAQLKVSKENKKKLLKELEQAKEKAELIVSDANKEAYMITQKYELQTKMDVEN 122
S RL+E + ++ LL+E E + + + DA+KE ++ ++ +QT +
Sbjct: 493 SLRLKEFDVLIGIN------LLREGLDLPEVSLVAIMDADKEGFLRSETSLIQT---MGR 543
Query: 123 LIKNSKALMDLEVKKIKRELVESV-FKDLRESKKVSFN 159
+N+ + L KK + + ++ R +K+ FN
Sbjct: 544 AARNANGKVLLYAKKTTQSMQKAFEITSYRRAKQEEFN 581
>ref|NP_223534.1| putative [Helicobacter pylori J99]
Length = 614
Score = 23.9 bits (50), Expect = 2.5
Identities = 23/106 (21%), Positives = 42/106 (38%), Gaps = 2/106 (1%)
Query: 64 KRLEEIQAQLKVSKENKKKLLKELEQAKEKAELIVSDANKEAYMITQKYELQTKMDVENL 123
+R ++IQ +LK + K ++L K + + ++ K+ + ELQ + E
Sbjct: 12 ERCKDIQKELKKAAAENKLQTEDLWFEILKTSIFIKNSAKDDFSEAFGGELQQLEEEEYY 71
Query: 124 IKNSKALMDLEVKKIKRELVESVF--KDLRESKKVSFNAQDCVNIL 167
K L KIK + F K + K+ +C +L
Sbjct: 72 EKKELTLYQTHDIKIKSNAYKRFFEVKVDEDLSKIEIILDECFIVL 117
>ref|NP_223310.1| putative [Helicobacter pylori J99]
Length = 135
Score = 23.9 bits (50), Expect = 2.5
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 37 LLFVGILWYFSAKKLRSFLRSKSLEISKRLEEIQAQLKVSKENKKK 82
+L VG+ W + L+ + +KSL + E+I+ V K K
Sbjct: 21 VLLVGLAWRLTRPPLKQNIPNKSLSLENLNEQIKNLQSVPALEKLK 66
>ref|NP_223287.1| putative [Helicobacter pylori J99]
Length = 359
Score = 23.9 bits (50), Expect = 2.5
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 79 NKKKLLKELEQAKEKAELIVSDANKEAY--MITQKYELQTKMDVENLIKNSKALMDLEVK 136
+K K+ ++ KEK I N + QKY K VE+ + N+K L DL+
Sbjct: 109 SKDKIKAVVDACKEKNIPIRIGVNAGSLEKQFDQKYGPTPKGMVESALYNAKLLEDLDFT 168
Query: 137 KIKRELVES 145
K L S
Sbjct: 169 DFKISLKAS 177
>ref|NP_224100.1| putative [Helicobacter pylori J99]
Length = 510
Score = 23.5 bits (49), Expect = 3.3
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 56 RSKSLEISKRLEEIQAQLKVSKENKKKLLKELEQAKEKAELIVSDANKEAYMITQKYE 113
R L + R+++ QA SK + ++ E QAK+ EL+V+ KE ++Y+
Sbjct: 384 RMPILSPTGRIQKYQA----SKLAELQVNSEQIQAKKNMELLVNKTYKETLSYLKEYK 437
>ref|NP_223865.1| OXYGEN-INDEPENDENT COPROPORPHYRINOGEN III OXIDASE [Helicobacter
pylori J99]
Length = 345
Score = 23.5 bits (49), Expect = 3.3
Identities = 22/84 (26%), Positives = 37/84 (43%), Gaps = 12/84 (14%)
Query: 78 ENKKKLLKELEQAKEKAELIVSDANKEAYMITQKYELQTKMDVENLIKNSKALMDLEVKK 137
+N+ L +EL+ AKE L ++ + A I + NL KN+K ++
Sbjct: 162 DNETSLKEELKLAKE---LPINHLSAYALSIEKN---------TNLEKNAKKPSSVDFDN 209
Query: 138 IKRELVESVFKDLRESKKVSFNAQ 161
+ RE++E F E + N Q
Sbjct: 210 VVREVLEGFFFKQYEVSNYARNYQ 233
>ref|NP_223099.1| putative [Helicobacter pylori J99]
Length = 370
Score = 23.5 bits (49), Expect = 3.3
Identities = 12/28 (42%), Positives = 18/28 (63%)
Query: 33 SLNFLLFVGILWYFSAKKLRSFLRSKSL 60
S+ FLL + +L Y S + L+SFL K +
Sbjct: 4 SIAFLLVLCLLNYSSFRMLKSFLTLKKI 31
>ref|NP_223854.1| POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE [Helicobacter pylori J99]
Length = 688
Score = 23.1 bits (48), Expect = 4.3
Identities = 11/29 (37%), Positives = 18/29 (61%)
Query: 65 RLEEIQAQLKVSKENKKKLLKELEQAKEK 93
+LE + L +K +K +LK + +AKEK
Sbjct: 513 QLEVLYQALLQAKRARKHILKIMHEAKEK 541
>ref|NP_223770.1| putative [Helicobacter pylori J99]
Length = 331
Score = 23.1 bits (48), Expect = 4.3
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 55 LRSKSLEISKRLEEIQAQLKVSKENKKKLLKELEQAKEKAELIVSDANKEAYMITQKYEL 114
L ++ E+S+ L ++ L +K LKE E+ EK + ANK + + +
Sbjct: 127 LDKQNKEMSELLTKLSQDLVSQIALIQKALKEQEEKAEKPLKSSTPANKNPPLKAETPKN 186
Query: 115 QTKMDVENLIKNSKALMDLEVKKIKRELVESV 146
Q K E +K D ++ K K E++
Sbjct: 187 QEKKTQE----KAKVEFDKDLSKQKEIFQEAL 214
>ref|NP_223636.1| DNA transfer protein [Helicobacter pylori J99]
Length = 140
Score = 23.1 bits (48), Expect = 4.3
Identities = 7/19 (36%), Positives = 16/19 (83%)
Query: 120 VENLIKNSKALMDLEVKKI 138
V+N++ N+ A +++++KKI
Sbjct: 89 VKNIVTNASAFIEIDLKKI 107
>ref|NP_223478.1| EXCINUCLEASE ABC SUBUNIT C [Helicobacter pylori J99]
Length = 594
Score = 23.1 bits (48), Expect = 4.3
Identities = 35/123 (28%), Positives = 53/123 (42%), Gaps = 35/123 (28%)
Query: 73 LKVSKE------NKKKLLKELEQAKEKAELIVSDANKEAYMI-------TQKYELQTKMD 119
LK++KE NK +L+KELE K E + S+ E +I QK T MD
Sbjct: 191 LKIAKECLEMIENKDRLIKELEL---KMERLSSNLRFEEALIYRDRIAKIQKIAPFTCMD 247
Query: 120 VENLIK---------NSKALMDLEVKKIKR--ELVESVFKDLRESKKVSFNAQDCVNILK 168
+ L N+KA++ VK R +++ S F+ + S N D +K
Sbjct: 248 LAKLYDLDIFAFYGGNNKAVL---VKMFMRGGKIISSAFEKIH-----SLNGFDTDEAMK 299
Query: 169 QRL 171
Q +
Sbjct: 300 QAI 302
>ref|NP_223449.1| TRIGGER FACTOR [Helicobacter pylori J99]
Length = 451
Score = 23.1 bits (48), Expect = 4.3
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 71 AQLKVSKENKKKLLKELEQAKEKAELIVSDANK 103
A + E K L E+AKEK E +DA K
Sbjct: 325 ALYSMQAEEVKSLQDSQEKAKEKRESFRNDATK 357
>ref|NP_223275.1| putative [Helicobacter pylori J99]
Length = 110
Score = 23.1 bits (48), Expect = 4.3
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 47 SAKKLRSFLRSKSLEISKRLEEIQAQLKVSKENK 80
S+++ SF S S + +EEI+ + K+SKE +
Sbjct: 34 SSERRSSFNVSLSPSLLAEIEEIEYEEKMSKERR 67
>ref|NP_223200.1| cag island protein [Helicobacter pylori J99]
Length = 199
Score = 23.1 bits (48), Expect = 4.3
Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 12/91 (13%)
Query: 62 ISKRLEEIQAQLKVSKENKKKLLKELEQAKEKAELIVSDANKEAYMITQKYELQTKMDVE 121
+S + ++ + + SK+ K+KL++ L++ EL+ +D K+ +I Q ++T D
Sbjct: 1 MSNNMRKLFSMIANSKDKKEKLIESLQE----NELLNTDEKKK--IIDQ---IKTMHDFF 51
Query: 122 NLIKNSKALMDLEVK---KIKRELVESVFKD 149
+ +K +D ++ K R +++S+ D
Sbjct: 52 KQMHTNKGALDKVLRNYMKDYRAVIKSIGVD 82
Score = 21.9 bits (45), Expect = 9.5
Identities = 9/40 (22%), Positives = 23/40 (57%)
Query: 49 KKLRSFLRSKSLEISKRLEEIQAQLKVSKENKKKLLKELE 88
+KL S + + + K +E +Q ++ + KKK++ +++
Sbjct: 6 RKLFSMIANSKDKKEKLIESLQENELLNTDEKKKIIDQIK 45
>ref|NP_222961.1| putative [Helicobacter pylori J99]
Length = 142
Score = 23.1 bits (48), Expect = 4.3
Identities = 16/71 (22%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 41 GILWYFSAKKLRSFLRSKSLEISKRLEEIQAQLKVSKENKKKLLKELEQAKEKAELIVSD 100
G+ + ++L+S LR + + E + LK+ +++ +ELE+AK ++ +
Sbjct: 54 GMSLFLQTQQLKSALRMEIEYYQQEGENLTKDLKILEKDYLLANQELEKAK---IILEKE 110
Query: 101 ANKEAYMITQK 111
KE ++ +K
Sbjct: 111 KQKEKEILEKK 121
>ref|NP_224102.1| putative PHOSPHATE PERMEASE [Helicobacter pylori J99]
Length = 533
Score = 22.7 bits (47), Expect = 5.6
Identities = 9/30 (30%), Positives = 21/30 (70%)
Query: 120 VENLIKNSKALMDLEVKKIKRELVESVFKD 149
+E+L K+ + LE+KK +++ ++ V+K+
Sbjct: 464 LESLKKSKNTAIALELKKKEKKSLKKVYKE 493
>ref|NP_224062.1| putative [Helicobacter pylori J99]
Length = 258
Score = 22.7 bits (47), Expect = 5.6
Identities = 10/28 (35%), Positives = 15/28 (52%)
Query: 41 GILWYFSAKKLRSFLRSKSLEISKRLEE 68
G+L Y + KKLR +K + I L +
Sbjct: 219 GVLTYIALKKLRKAFPNKYVSIKTNLND 246
>ref|NP_224040.1| DIMETHYLADENOSINE TRANSFERASE [Helicobacter pylori J99]
Length = 271
Score = 22.7 bits (47), Expect = 5.6
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 108 ITQKYELQTKMDVENLIKNSKALMDLEVKKIKRELVESVFKDLRESK 154
+ +Y L+T NL + +A + E K + ELVE L+E +
Sbjct: 48 LLDRYPLKTYEIDSNLCEKMRARLRAEKKPFQLELVEKDALFLKEEE 94
>ref|NP_223651.1| putative [Helicobacter pylori J99]
Length = 339
Score = 22.7 bits (47), Expect = 5.6
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 53 SFLRSKSLEISKRLEEIQAQLKVSKENKKKLLKELEQAKEKAELIVSDANKEAY----MI 108
SF ++S I + L K ++E +KLLK+LE+ + K + I+ N + +I
Sbjct: 76 SFKETRSTFIEEALIRHLKHRKNTQE--QKLLKQLERLQNKEKGIMKTMNLNEFFTHKII 133
Query: 109 TQKYELQTKMDVENLIKNSKALMDLEVKKIKRELV 143
+ L+ K +E I + + L + I +V
Sbjct: 134 YKDTPLKFKDTLEQEISQASLVEKLILANILANMV 168
>ref|NP_223630.1| septum formation protein [Helicobacter pylori J99]
Length = 493
Score = 22.7 bits (47), Expect = 5.6
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 110 QKYELQTKMDVENLIKNSKALMDLEVKKIKREL 142
+K +Q+ +++EN++ NS A + +REL
Sbjct: 192 EKIMIQSGVEIENIVINSYAASIATLSNDEREL 224
>ref|NP_223323.1| putative [Helicobacter pylori J99]
Length = 335
Score = 22.7 bits (47), Expect = 5.6
Identities = 20/75 (26%), Positives = 32/75 (42%)
Query: 60 LEISKRLEEIQAQLKVSKENKKKLLKELEQAKEKAELIVSDANKEAYMITQKYELQTKMD 119
L S R E +L + E +K K LE + EL V + + ++ K D
Sbjct: 132 LRFSPRNVEALLKLLHAYELEKDYSKALETLECLEELEVPKIETIKNYLYLMHLIENKED 191
Query: 120 VENLIKNSKALMDLE 134
++ SKA +DL+
Sbjct: 192 AAKILHVSKASLDLK 206
>ref|NP_223283.1| DNA MISMATCH REPAIR PROTEIN [Helicobacter pylori J99]
Length = 762
Score = 22.7 bits (47), Expect = 5.6
Identities = 18/95 (18%), Positives = 48/95 (49%), Gaps = 9/95 (9%)
Query: 68 EIQAQLKVSKENKKKLLKELEQAKEKAELIVSDAN--KEAYMITQKYELQ----TKMDVE 121
E + +L V EN L +EL+Q E E + + K A+++ + + + K+++E
Sbjct: 511 EDKEKLNVLIENSSTLERELKQKNEHLENALKEQEDLKNAWLLEMEKQKEIFHHKKLELE 570
Query: 122 NLIKNSKALMDLEVKKIKRELVESVFKDLRESKKV 156
K+ + +++ ++ + S+ K++ ++ ++
Sbjct: 571 ---KSYQQALNILKSEVASKDTSSMHKEIHKASEI 602
>ref|NP_223234.1| putative [Helicobacter pylori J99]
Length = 366
Score = 22.7 bits (47), Expect = 5.6
Identities = 14/39 (35%), Positives = 21/39 (52%), Gaps = 9/39 (23%)
Query: 62 ISKRLEEIQAQLKVSKENKKKL---------LKELEQAK 91
+ KR++ +Q LK SK+ K L L+EL+ AK
Sbjct: 141 LDKRIDRLQKALKSSKDAKNLLECALSLKTHLEELKPAK 179
>ref|NP_222812.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 675
Score = 22.7 bits (47), Expect = 5.6
Identities = 15/72 (20%), Positives = 31/72 (42%), Gaps = 7/72 (9%)
Query: 55 LRSKSLEISKRLEEIQAQLKV-------SKENKKKLLKELEQAKEKAELIVSDANKEAYM 107
+R + K L EI+A + + + E+ K +KE+E+ E + S +
Sbjct: 589 VRKLAERTQKSLSEIEANINILVQSISDTSESIKNQVKEVEEINASIEALRSVTEGNLKI 648
Query: 108 ITQKYELQTKMD 119
+ E+ ++D
Sbjct: 649 ASDSLEISQEID 660
>ref|NP_224029.1| lipopolysaccharide biosynthesis protein [Helicobacter pylori J99]
Length = 367
Score = 22.3 bits (46), Expect = 7.3
Identities = 12/28 (42%), Positives = 16/28 (56%)
Query: 75 VSKENKKKLLKELEQAKEKAELIVSDAN 102
V+ E + KLLK +E K+ A L D N
Sbjct: 70 VTLEQQNKLLKTIEPFKKFASLEFIDIN 97
>ref|NP_223371.1| putative abc transporter, ATP-binding protein [Helicobacter pylori
J99]
Length = 240
Score = 22.3 bits (46), Expect = 7.3
Identities = 16/58 (27%), Positives = 29/58 (49%), Gaps = 2/58 (3%)
Query: 111 KYEL--QTKMDVENLIKNSKALMDLEVKKIKRELVESVFKDLRESKKVSFNAQDCVNI 166
KY L ++ + + L + S +L V++ ES FK+ +ES++ + D NI
Sbjct: 69 KYPLHKRSNLGIGYLPQESSIFKELSVEENLALAGESTFKNSKESEEKMESLLDAFNI 126
>ref|NP_223184.1| GTP-binding protein [Helicobacter pylori J99]
Length = 301
Score = 22.3 bits (46), Expect = 7.3
Identities = 7/21 (33%), Positives = 18/21 (85%)
Query: 64 KRLEEIQAQLKVSKENKKKLL 84
+R++++ A++ V KE++KK++
Sbjct: 223 ERIDKVYARIIVEKESQKKIV 243
>ref|NP_223168.1| putative transporter [Helicobacter pylori J99]
Length = 442
Score = 22.3 bits (46), Expect = 7.3
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Query: 7 VLGFLILLSP---LCATGLD--ISQTDIIERSLNFLLFVGILWY 45
V+GF L P + G++ I + +++ L F++F+G+L Y
Sbjct: 141 VIGFSACLLPTIWFVSRGIEKGIEKLNVVLMPLLFVIFIGLLIY 184
>ref|NP_223089.1| putative [Helicobacter pylori J99]
Length = 313
Score = 22.3 bits (46), Expect = 7.3
Identities = 9/21 (42%), Positives = 14/21 (65%)
Query: 74 KVSKENKKKLLKELEQAKEKA 94
K+S + +KKLLK A +K+
Sbjct: 68 KISSKKRKKLLKSFSIADDKS 88
>ref|NP_223053.1| ALPHA-KETOGLUTARATE PERMEASE [Helicobacter pylori J99]
Length = 437
Score = 22.3 bits (46), Expect = 7.3
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 2 FVVKMVLGFLILLSPLCATGLD-ISQTDII 30
F++ + L + I L PLC D I +T ++
Sbjct: 290 FIMLLALSYFIFLQPLCGMLADKIKRTQML 319
>ref|NP_222870.1| putative [Helicobacter pylori J99]
Length = 240
Score = 22.3 bits (46), Expect = 7.3
Identities = 15/46 (32%), Positives = 23/46 (49%)
Query: 45 YFSAKKLRSFLRSKSLEISKRLEEIQAQLKVSKENKKKLLKELEQA 90
YF+ + S + + SLE + + LK EN K L++LE A
Sbjct: 112 YFNKTQGASIVPNGSLEFMFNRKSVFECLKSEVENLKLSLEDLEFA 157
>ref|NP_222827.1| putative [Helicobacter pylori J99]
Length = 627
Score = 22.3 bits (46), Expect = 7.3
Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 85 KELEQAKEKAELIVSDANKEAYMITQKYELQTKM--DVENLIKNSKALMDLEVKKIKREL 142
K L+ AK+K E I+ AN++ + + + + VE L + +K L +L+ ++++
Sbjct: 485 KNLKIAKKKCEEIIKYANEKKTQVEEAFLKVAEFLEKVEKLHEKNK-LEELDFEELENLS 543
Query: 143 VE-SVFKDLRESKKVSFNAQDCV 164
E K+L + K+ + D +
Sbjct: 544 AEIDNVKELFDDKRFNSYFMDAI 566
>ref|NP_223841.1| 50S RIBOSOMAL PROTEIN L1 [Helicobacter pylori J99]
Length = 234
Score = 21.9 bits (45), Expect = 9.5
Identities = 11/46 (23%), Positives = 24/46 (51%)
Query: 121 ENLIKNSKALMDLEVKKIKRELVESVFKDLRESKKVSFNAQDCVNI 166
EN+++ K + L+ K + + + L S V+ +AQ+ ++I
Sbjct: 188 ENMLELVKTINRLKPSSAKGKYIRNAALSLTMSPSVNLDAQELMDI 233
>ref|NP_223774.1| BIOPOLYMER TRANSPORT PROTEIN [Helicobacter pylori J99]
Length = 133
Score = 21.9 bits (45), Expect = 9.5
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Query: 85 KELEQAKEKAELIVSDANKEAYMITQKYELQTKMDVENLI-KNSKALMDLEVKKIKRELV 143
K ++K I D + + Y+ +Q YE + D NL+ K + ++ KR
Sbjct: 50 KTARATQDKVIEIRMDKDAKIYIDSQTYEYNSFPDTFNLLSKKYDKDTRVSIRADKRLTY 109
Query: 144 ESVFKDLRESKKVSF 158
+ V L+ K+ F
Sbjct: 110 DKVIYLLKTIKEAGF 124
>ref|NP_223706.1| histidine kinase [Helicobacter pylori J99]
Length = 815
Score = 21.9 bits (45), Expect = 9.5
Identities = 21/92 (22%), Positives = 37/92 (39%), Gaps = 4/92 (4%)
Query: 66 LEEIQAQLKVSKENKKKLLKELEQAKEKAELIVSDANKEAYMITQKYELQTKMDVENLIK 125
+EE+ +L+ + KE KE E V NKE ++ + ENL
Sbjct: 119 IEEVVKKLQAITSQNLEGAKETSGTKEAPEKEVKKENKE--KAKEEVKANKTPTTENLTS 176
Query: 126 NSKAL--MDLEVKKIKRELVESVFKDLRESKK 155
++ DL+ + E VE+ + L ++
Sbjct: 177 DNPLADEPDLDYANMSAEEVEAEIERLLNKRQ 208
>ref|NP_223643.1| putative [Helicobacter pylori J99]
Length = 338
Score = 21.9 bits (45), Expect = 9.5
Identities = 10/42 (23%), Positives = 21/42 (49%)
Query: 87 LEQAKEKAELIVSDANKEAYMITQKYELQTKMDVENLIKNSK 128
L++ ++K +I D +++ + L +M L+KN K
Sbjct: 263 LQERRDKTNIIYEDLHRDLSPDNRNEALLERMRSYTLLKNEK 304
>ref|NP_223353.1| short-chain fatty acids transporter [Helicobacter pylori J99]
Length = 454
Score = 21.9 bits (45), Expect = 9.5
Identities = 9/24 (37%), Positives = 14/24 (57%)
Query: 2 FVVKMVLGFLILLSPLCATGLDIS 25
FV+ +L F++ + C TG D S
Sbjct: 23 FVLVALLSFVVFVLVYCLTGQDAS 46
>ref|NP_223069.1| putative [Helicobacter pylori J99]
Length = 438
Score = 21.9 bits (45), Expect = 9.5
Identities = 13/60 (21%), Positives = 24/60 (39%)
Query: 110 QKYELQTKMDVENLIKNSKALMDLEVKKIKRELVESVFKDLRESKKVSFNAQDCVNILKQ 169
+KY L+ + + KAL + + K K+L +V ++ Q +L Q
Sbjct: 187 EKYHLKNTRTAQGDTEMQKALTFYAINQKKSAFANEASKELPLESRVFYHLQAIEGLLNQ 246
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.319 0.135 0.348
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 165,616
Number of Sequences: 1491
Number of extensions: 7417
Number of successful extensions: 111
Number of sequences better than 10.0: 79
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 39
Number of HSP's gapped (non-prelim): 99
length of query: 171
length of database: 494,079
effective HSP length: 72
effective length of query: 99
effective length of database: 386,727
effective search space: 38285973
effective search space used: 38285973
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)