BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645751|ref|NP_207928.1| ATP synthase F0, subunit b'
(atpF') [Helicobacter pylori 26695]
(144 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223782.1| ATP synthase B' [Helicobacter pylori J99] 268 4e-74
ref|NP_223159.1| putative [Helicobacter pylori J99] 31 0.015
ref|NP_222846.1| putative [Helicobacter pylori J99] 31 0.015
ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [He... 29 0.045
ref|NP_223402.1| putative [Helicobacter pylori J99] 29 0.059
ref|NP_223189.1| cag island protein [Helicobacter pylori J99] 27 0.17
ref|NP_223534.1| putative [Helicobacter pylori J99] 27 0.29
ref|NP_223644.1| putative [Helicobacter pylori J99] 26 0.38
ref|NP_223264.1| methyl-accepting chemotaxis protein (MCP) ... 26 0.38
ref|NP_223695.1| PHENYLALANYL-TRNA SYNTHETASE ALPHA CHAIN [... 25 0.85
ref|NP_223656.1| putative [Helicobacter pylori J99] 25 0.85
ref|NP_223436.1| putative [Helicobacter pylori J99] 25 0.85
ref|NP_223137.1| putative [Helicobacter pylori J99] 25 1.1
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 25 1.1
ref|NP_222816.1| methyl-accepting chemotaxis protein (MCP) ... 25 1.1
ref|NP_224089.1| putative ATP-DEPENDENT DNA HELICASE [Helic... 24 1.4
ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT ... 24 1.4
ref|NP_223892.1| TRYPTOPHANYL-TRNA SYNTHETASE [Helicobacter... 24 1.9
ref|NP_222961.1| putative [Helicobacter pylori J99] 24 1.9
ref|NP_223965.1| putative [Helicobacter pylori J99] 23 2.5
ref|NP_223136.1| putative [Helicobacter pylori J99] 23 2.5
ref|NP_222780.1| putative [Helicobacter pylori J99] 23 2.5
ref|NP_222772.1| putative [Helicobacter pylori J99] 23 2.5
ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 23 3.2
ref|NP_223889.1| putative [Helicobacter pylori J99] 23 3.2
ref|NP_223598.1| putative [Helicobacter pylori J99] 23 3.2
ref|NP_223195.1| cag island protein [Helicobacter pylori J99] 23 3.2
ref|NP_222892.1| SERINE HYDROXYMETHYLTRANSFERASE [Helicobac... 23 3.2
ref|NP_222783.1| putative [Helicobacter pylori J99] 23 3.2
ref|NP_224190.1| putative Outer membrane protein [Helicobac... 22 5.5
ref|NP_223664.1| putative [Helicobacter pylori J99] 22 5.5
ref|NP_223574.1| putative vacuolating cytotoxin (VacA) para... 22 5.5
ref|NP_222948.1| putative [Helicobacter pylori J99] 22 5.5
ref|NP_222920.1| GLUCOSE INHIBITED DIVISION PROTEIN A [Heli... 22 5.5
ref|NP_222891.1| LYSYL-TRNA SYNTHETASE [Helicobacter pylori... 22 5.5
ref|NP_222831.1| putative [Helicobacter pylori J99] 22 5.5
ref|NP_223836.1| 30S RIBOSOMAL PROTEIN S7 [Helicobacter pyl... 22 7.2
ref|NP_223618.1| putative [Helicobacter pylori J99] 22 9.3
ref|NP_222858.1| putative [Helicobacter pylori J99] 22 9.3
ref|NP_222723.1| TRANSCRIPTION TERMINATION [Helicobacter py... 22 9.3
>ref|NP_223782.1| ATP synthase B' [Helicobacter pylori J99]
Length = 144
Score = 268 bits (685), Expect = 4e-74
Identities = 138/144 (95%), Positives = 140/144 (96%)
Query: 1 MNISVNPYLMAVVFVVFVLLLWAMNVWVYRPLLAFMDNRQAEIKDSLAKIKTDNAQSVEI 60
MNISVNPYLMAVVFVVFVLLLWAMNVWVYRPLLAFMDNRQAEIKDSLAKIKTDN QSVEI
Sbjct: 1 MNISVNPYLMAVVFVVFVLLLWAMNVWVYRPLLAFMDNRQAEIKDSLAKIKTDNTQSVEI 60
Query: 61 GHQIEALLKEAAEKRREIIAEAIQKATESYDAVIKQKENELNQEFEAFAKQLQNEKQALK 120
GHQIE LLKEAAEKRRE++AEAIQKATESYDAVIKQKENELNQEFEAFAKQLQNEKQ LK
Sbjct: 61 GHQIETLLKEAAEKRREMLAEAIQKATESYDAVIKQKENELNQEFEAFAKQLQNEKQILK 120
Query: 121 EQLQAQMPVFEDELNKRVAMGLGS 144
EQLQAQM VFEDELNKRVAMGLGS
Sbjct: 121 EQLQAQMTVFEDELNKRVAMGLGS 144
>ref|NP_223159.1| putative [Helicobacter pylori J99]
Length = 181
Score = 30.8 bits (68), Expect = 0.015
Identities = 18/65 (27%), Positives = 34/65 (51%), Gaps = 1/65 (1%)
Query: 52 TDNAQSVEIGHQIEALLKEAAEKRREIIAEAIQKATESYDAVI-KQKENELNQEFEAFAK 110
T NA + I +I+ L + E+ R ++ + QK+ ++Y+A++ Q +N L + F
Sbjct: 116 TLNANTENIKSEIKKLENQLIEETRMLLEQETQKSVKAYNAMMGHQPQNSLKHGLKNFNN 175
Query: 111 QLQNE 115
L E
Sbjct: 176 PLSKE 180
>ref|NP_222846.1| putative [Helicobacter pylori J99]
Length = 211
Score = 30.8 bits (68), Expect = 0.015
Identities = 24/79 (30%), Positives = 38/79 (47%), Gaps = 5/79 (6%)
Query: 50 IKTDNAQSVEIGHQIEALLK-EAAEKRREIIAEAIQKATESYDAVIKQKENELNQEFEAF 108
IK + VE + L K E E +E + +AI KA E++ + +LN FEAF
Sbjct: 30 IKVEFEDLVEEYKHFQVLNKAELIESAKENLEQAILKALENFQSKKVLHSTDLNLNFEAF 89
Query: 109 ----AKQLQNEKQALKEQL 123
+ E +A++E+L
Sbjct: 90 KDFTLQPYDKEIEAMREEL 108
Score = 26.6 bits (57), Expect = 0.29
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 65 EALLKEAAEKRREIIAEAIQKATESYDAVIKQKENELNQEFEAFAKQLQNEKQAL---KE 121
E +LK E R + AIQ A Y +IK + +L +E++ F Q+ N+ + + KE
Sbjct: 4 ELILKRIKEARAK---HAIQGANPIYRNIIKVEFEDLVEEYKHF--QVLNKAELIESAKE 58
Query: 122 QL-QAQMPVFEDELNKRV 138
L QA + E+ +K+V
Sbjct: 59 NLEQAILKALENFQSKKV 76
>ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [Helicobacter pylori J99]
Length = 681
Score = 29.3 bits (64), Expect = 0.045
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 69 KEAAEKRREIIAEAIQKATESYDAVIKQKENELNQEFEAFAKQLQNEKQALKEQLQAQMP 128
+E A KR + EA +AT+ A KEN+ N+ E K+ + ++ +KE + +P
Sbjct: 7 EEKAPKRAK--QEAKTEATQENKAKESNKENKNNKAKEGKIKEAKTKESKVKETAKEPIP 64
Query: 129 VFEDELNK 136
V + N+
Sbjct: 65 VKKLSFNE 72
Score = 24.3 bits (51), Expect = 1.4
Identities = 25/120 (20%), Positives = 53/120 (43%), Gaps = 25/120 (20%)
Query: 43 IKDSLAKIKTDNAQSVEIG-HQIEALLKEAAEKRR-----------EIIAEAIQKATESY 90
IK ++++ D A+++ I H I+ + + R+ E++AE + + +
Sbjct: 502 IKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLDKV 561
Query: 91 DAVIKQKENELNQE----------FEAFAKQ---LQNEKQALKEQLQAQMPVFEDELNKR 137
VIK + ++ E F F + + + ++E L+AQ+ D+LN+R
Sbjct: 562 KNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIESVLDQLNER 621
Score = 23.5 bits (49), Expect = 2.5
Identities = 17/79 (21%), Positives = 35/79 (43%), Gaps = 3/79 (3%)
Query: 43 IKDSLAKIKTDNAQSVEIGHQIEALLKEAAEKRREIIAEAIQKATESYDAVIKQKENELN 102
++D D+ ++ QIE++L + E+ + +I + D +++ ELN
Sbjct: 590 VEDKNIVSSIDHIMREDLKAQIESVLDQLNEREKAVIRMRFGLLDDESDRTLEEIGKELN 649
Query: 103 QEFEAFAKQLQNEKQALKE 121
E + Q E A+K+
Sbjct: 650 VTRE---RVRQIESSAIKK 665
>ref|NP_223402.1| putative [Helicobacter pylori J99]
Length = 400
Score = 28.9 bits (63), Expect = 0.059
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 84 QKATESYDAVIKQKENELNQEFEAFAKQLQNEKQALKEQLQAQMPVFEDELNKR-----V 138
+KAT ++KQ +Q FE + LQ + ++ + FED + K +
Sbjct: 64 EKATPLKREILKQALRIYSQSFEVISHNLQENSKHASQKKALDLETFEDFIQKNQAPILI 123
Query: 139 AMGLGS 144
+G GS
Sbjct: 124 EIGFGS 129
>ref|NP_223189.1| cag island protein [Helicobacter pylori J99]
Length = 481
Score = 27.3 bits (59), Expect = 0.17
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 30 RPLLAFMDNRQAEIKDSLAKIKTDNAQSVEIGHQIEALLKEAAEKRREIIAEAIQKATES 89
+ LLA + ++ E LAK K + ++ + +EA LK+ K+ ++ I T
Sbjct: 304 KKLLAEKEKQETE----LAKYKLKDLENQKKLKALEAELKKKNTKKPRVVEVPIPPKTSD 359
Query: 90 YD---AVIKQKEN 99
D VIK+KEN
Sbjct: 360 SDETMRVIKEKEN 372
Score = 22.3 bits (46), Expect = 5.5
Identities = 13/63 (20%), Positives = 33/63 (51%), Gaps = 4/63 (6%)
Query: 67 LLKEAAEKRREIIAEAIQKATESYDAVIKQKENELNQEFEAFAKQLQNEKQALKEQLQAQ 126
L+ E+ ++++AE ++ TE + K K +L + + A + + +K+ K+ +
Sbjct: 295 LIANEEEREKKLLAEKEKQETE----LAKYKLKDLENQKKLKALEAELKKKNTKKPRVVE 350
Query: 127 MPV 129
+P+
Sbjct: 351 VPI 353
>ref|NP_223534.1| putative [Helicobacter pylori J99]
Length = 614
Score = 26.6 bits (57), Expect = 0.29
Identities = 21/87 (24%), Positives = 41/87 (46%), Gaps = 3/87 (3%)
Query: 40 QAEIKDSLAKIKTDNAQSVEIGHQIEALLKEAAEKRREIIAEAIQKATESYDAVIKQKEN 99
Q E+K++ K+ +S +I Q ++L K ++I E ++ ATE + Q+E+
Sbjct: 456 QEELKNAKQKLNALGVKSKKIIAQHQSL--NHLVKNNQVIMEKLKNATEEIKRSLMQQES 513
Query: 100 ELNQEFEAFAKQLQNEKQALKEQLQAQ 126
+ + F L+ K + L+ Q
Sbjct: 514 -VKDAYSEFVFALKRLKILKAQMLELQ 539
>ref|NP_223644.1| putative [Helicobacter pylori J99]
Length = 465
Score = 26.2 bits (56), Expect = 0.38
Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Query: 27 WVYRPLLAFMDNRQAEIKDSLAKIKTDNAQSVEIGHQIEALLKEAAEKRREIIA-EAIQK 85
W A +NR ++ +L ++ +E+ E++ +REI + I +
Sbjct: 339 WTKEEQSAIQENRDYSLRSALLSLEEIAQAKIELQKYYESVYVNGDGNKREIKPFKEILR 398
Query: 86 ATESYDAVIKQKENELNQEFEAF--AKQLQNEKQ 117
T +++ K++ ++L A AK+ NE+Q
Sbjct: 399 DTNNFEKAYKERYDKLVSLSAAIIQAKEGGNERQ 432
>ref|NP_223264.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 433
Score = 26.2 bits (56), Expect = 0.38
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 12/76 (15%)
Query: 79 IAEAIQKATESYDAVIKQKENELN------QEFEAFAKQLQNEKQALKEQLQAQMPVFED 132
+AE QKAT+ V+K + E N + + ++ + + LK ++ M V +
Sbjct: 235 LAEKTQKATKEIAVVVKSMQQEANDIQTNTHDINSIVGSIKGDVEELKSTVKNNMIVAQA 294
Query: 133 ------ELNKRVAMGL 142
+N RV GL
Sbjct: 295 AKYTIYNINNRVFCGL 310
>ref|NP_223695.1| PHENYLALANYL-TRNA SYNTHETASE ALPHA CHAIN [Helicobacter pylori J99]
Length = 328
Score = 25.0 bits (53), Expect = 0.85
Identities = 14/44 (31%), Positives = 26/44 (58%), Gaps = 1/44 (2%)
Query: 96 QKENELNQEFEAFAKQLQNEKQALKEQLQ-AQMPVFEDELNKRV 138
Q +N +E AFAK++ + KQA ++ + + + E EL +R+
Sbjct: 37 QLKNLNGEEKNAFAKEIHHYKQAFEKAFELKKKAIMELELEERL 80
>ref|NP_223656.1| putative [Helicobacter pylori J99]
Length = 337
Score = 25.0 bits (53), Expect = 0.85
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 22/96 (22%)
Query: 51 KTDNAQSVEIGHQIEALLKEAAEKRREIIAEAIQKA-------------TESYDAV---- 93
K D +Q + G + KE ++ RE I E +++ TE + +
Sbjct: 58 KVDGSQYLNSGWNLS---KEFPQEYREKIFECVEEEKHKQALNLINKEDTEDKEELAKKI 114
Query: 94 --IKQKENELNQEFEAFAKQLQNEKQALKEQLQAQM 127
IK+K L Q+F AF + +++ K+QLQ +
Sbjct: 115 KEIKEKAKVLRQKFMAFEMKEHSKEFPNKKQLQTML 150
>ref|NP_223436.1| putative [Helicobacter pylori J99]
Length = 429
Score = 25.0 bits (53), Expect = 0.85
Identities = 11/43 (25%), Positives = 23/43 (52%)
Query: 78 IIAEAIQKATESYDAVIKQKENELNQEFEAFAKQLQNEKQALK 120
+I E +++ TES + +K +EN ++ +F+K + K
Sbjct: 247 LIGERLRQITESLNVEVKHQENISYKQATSFSKNFRKHDAFFK 289
>ref|NP_223137.1| putative [Helicobacter pylori J99]
Length = 115
Score = 24.6 bits (52), Expect = 1.1
Identities = 16/52 (30%), Positives = 26/52 (49%), Gaps = 1/52 (1%)
Query: 73 EKRREIIAEAIQKATESYDAVIKQKENELNQEFEAFAKQLQNEKQALKEQLQ 124
EKR E I + KQKE ++ ++A ++ +KQ LKEQ++
Sbjct: 62 EKREEYIERLKKNHERKMILQDKQKEEQMRL-YQAKKERESRQKQDLKEQMK 112
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 24.6 bits (52), Expect = 1.1
Identities = 21/76 (27%), Positives = 36/76 (46%), Gaps = 7/76 (9%)
Query: 51 KTDNAQSVEIGHQIEALLKEAAE--KRREIIAEAIQKAT-----ESYDAVIKQKENELNQ 103
K DN + + L K+A++ K+ E A+ K T E+ +IK+KE E+
Sbjct: 71 KQDNKDDLNTAATPKPLAKKASKTPKKEETKAQPKPKKTKEKKKEAPAPIIKKKEIEIVN 130
Query: 104 EFEAFAKQLQNEKQAL 119
FE ++N +A+
Sbjct: 131 TFENQTPLVENTPKAV 146
>ref|NP_222816.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 564
Score = 24.6 bits (52), Expect = 1.1
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
Query: 42 EIKDSLAKIKTDNAQSVE----IGHQIEALLKEAAE 73
++ +L+ + D+ QS++ GHQIEA++ + AE
Sbjct: 491 KMSSNLSSVVLDSNQSMDDYAKSGHQIEAMVSDFAE 526
>ref|NP_224089.1| putative ATP-DEPENDENT DNA HELICASE [Helicobacter pylori J99]
Length = 681
Score = 24.3 bits (51), Expect = 1.4
Identities = 17/72 (23%), Positives = 32/72 (43%), Gaps = 4/72 (5%)
Query: 52 TDNAQSVEIGHQIEALLKEAAEKRREIIAEAIQKATESYDAVIKQKENELNQEFEAFAKQ 111
T +S+++ +QI+ALLK+ I + + S I++ N LN +
Sbjct: 309 TQKEESLDVAYQIKALLKKGENLENIAILYRLNGLSRS----IEESLNALNIPYRLIGAV 364
Query: 112 LQNEKQALKEQL 123
E+ +K+ L
Sbjct: 365 SFYERAEVKDAL 376
>ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT [Helicobacter pylori J99]
Length = 2890
Score = 24.3 bits (51), Expect = 1.4
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 69 KEAAEKRREIIAEAIQKATESYDAVIKQKENELNQEFEAFAKQLQNEK 116
K E++ + E +Q+ TE Y ++ + Q +AF +L + K
Sbjct: 1787 KRMIEQKSNEVWECLQEITEGYPVLLNRAPTLHKQSIQAFHPKLIDGK 1834
>ref|NP_223892.1| TRYPTOPHANYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 326
Score = 23.9 bits (50), Expect = 1.9
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 35 FMDNRQAEIKDSLAKIKTDNAQSVEIGHQ------IEALLKEAAEKRREIIAEAIQKATE 88
F + + K LA++ + + ++ +Q ++A+L AEK R + QKA E
Sbjct: 262 FRNKGYGDFKKELAEVVIQSLKPIQERYQEISDDEVKAVLNCGAEKARPLARATYQKAKE 321
>ref|NP_222961.1| putative [Helicobacter pylori J99]
Length = 142
Score = 23.9 bits (50), Expect = 1.9
Identities = 24/101 (23%), Positives = 42/101 (40%), Gaps = 5/101 (4%)
Query: 36 MDNRQAEIKDSLAKIKTDNAQSVEIGHQIEALLKEAAEKRREIIAEAIQKATESYDAVIK 95
+ + E+ D A++ ++ E+G L + + + E Q+ E+ +K
Sbjct: 30 LQQNEREVLDKQAQLSA--FKNPELGGMSLFLQTQQLKSALRMEIEYYQQEGENLTKDLK 87
Query: 96 QKENEL---NQEFEAFAKQLQNEKQALKEQLQAQMPVFEDE 133
E + NQE E L+ EKQ KE L+ + DE
Sbjct: 88 ILEKDYLLANQELEKAKIILEKEKQKEKEILEKKEQALLDE 128
>ref|NP_223965.1| putative [Helicobacter pylori J99]
Length = 412
Score = 23.5 bits (49), Expect = 2.5
Identities = 20/56 (35%), Positives = 30/56 (52%), Gaps = 11/56 (19%)
Query: 44 KDSLA-KIKTDNAQSVEIGHQIEALLKEAAEKRREIIAEAIQKATESYDAVIKQKE 98
K+SLA K + +NA++ + H LLK+ E +QK ES + +IKQ E
Sbjct: 313 KESLAFKSEVENAKN-KTRHLALKLLKKL---------ETLQKNLESINKIIKQNE 358
>ref|NP_223136.1| putative [Helicobacter pylori J99]
Length = 255
Score = 23.5 bits (49), Expect = 2.5
Identities = 12/32 (37%), Positives = 17/32 (52%)
Query: 94 IKQKENELNQEFEAFAKQLQNEKQALKEQLQA 125
I + E LN E + AK+L NE KE ++
Sbjct: 86 IHELEQPLNSEQQNLAKELLNEPVDKKENFES 117
>ref|NP_222780.1| putative [Helicobacter pylori J99]
Length = 500
Score = 23.5 bits (49), Expect = 2.5
Identities = 17/53 (32%), Positives = 26/53 (48%), Gaps = 2/53 (3%)
Query: 84 QKATESYDAVIKQKENELNQEFEAFAKQLQNEKQALKEQLQAQM-PVFEDELN 135
++A E + IK+ N+ N EAF L+ E + E L ++ PV E N
Sbjct: 314 KEALEGFTEKIKESPNDSNAINEAF-DNLETELERATENLSQKIDPVLERNEN 365
>ref|NP_222772.1| putative [Helicobacter pylori J99]
Length = 220
Score = 23.5 bits (49), Expect = 2.5
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 36 MDNRQAEIKDSLAKIKTDNAQSVEIGHQIEALLKEAAEKRREIIAEAIQKATESYDAVIK 95
++N +A++ + K+KTD E + + L E E +I A +K + D
Sbjct: 154 LENEKADLTNENTKLKTDKTDLTE---KNQRLTTEKTELNNKITGLATEKERLAADKENL 210
Query: 96 QKEN 99
KE+
Sbjct: 211 TKES 214
>ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 815
Score = 23.1 bits (48), Expect = 3.2
Identities = 16/73 (21%), Positives = 32/73 (42%), Gaps = 8/73 (10%)
Query: 42 EIKDSLAKIKTDNAQSVEIGHQIEALLKEAAEKRREIIAEAIQKATESYDAVIKQKENEL 101
EIKD + K K N+ ++ L+ +KR A A+ + SY + + + E+
Sbjct: 746 EIKDLIIKDKWLNS--------LKNALENKIQKRTNAFASALNEIISSYSNSLLELDKEV 797
Query: 102 NQEFEAFAKQLQN 114
+ + L++
Sbjct: 798 KESESKVLEHLKD 810
>ref|NP_223889.1| putative [Helicobacter pylori J99]
Length = 219
Score = 23.1 bits (48), Expect = 3.2
Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 40 QAEIKDSLAKIKTDNAQSVEIGHQIEALLKEAAEKRREIIAEAIQKATESYDAVIKQKEN 99
Q KD++ + T Q EI +I+ +K+ EI E Q+ + KQ++
Sbjct: 75 QNPTKDTVPPLDTAT-QKQEIKQEIKQEIKQ------EIKQEIKQEIKQEIKQETKQEQE 127
Query: 100 ELNQEFEAFAKQLQNEKQALKEQLQAQMPV 129
+ N+ + +QN+++ L + P+
Sbjct: 128 KENKPKQNSVSPVQNDQKTPTTPLMGKKPL 157
>ref|NP_223598.1| putative [Helicobacter pylori J99]
Length = 493
Score = 23.1 bits (48), Expect = 3.2
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 2 NISVNPYLMAVVFVVFVLLLWAMNV 26
++S N Y + + VF+ +LW +N+
Sbjct: 200 SLSSNYYAIFALIAVFLTILWQINL 224
>ref|NP_223195.1| cag island protein [Helicobacter pylori J99]
Length = 522
Score = 23.1 bits (48), Expect = 3.2
Identities = 15/49 (30%), Positives = 25/49 (50%), Gaps = 9/49 (18%)
Query: 91 DAVIKQKENELNQEFEAFAKQLQNEKQALKEQLQAQMPVFEDELNKRVA 139
+ + +Q+ENEL+Q + ++EQ QA +ELNK+ A
Sbjct: 201 ELIKQQRENELDQ---------MERLEDMQEQAQANALKQIEELNKKQA 240
>ref|NP_222892.1| SERINE HYDROXYMETHYLTRANSFERASE [Helicobacter pylori J99]
Length = 416
Score = 23.1 bits (48), Expect = 3.2
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 97 KENELNQEFEAFAKQLQNEKQALKEQLQ 124
KEN L EF+A+AK +++ Q L + L+
Sbjct: 272 KEN-LKPEFKAYAKLVKSNMQVLAKTLK 298
>ref|NP_222783.1| putative [Helicobacter pylori J99]
Length = 806
Score = 23.1 bits (48), Expect = 3.2
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 12/61 (19%)
Query: 79 IAEAIQKATESYDAVIKQKENELNQEFEAFAKQLQN---EKQALKEQLQAQM---PVFED 132
I+E +QK ++ D V+ +KE E+F K + + + Q Q+QAQ P F +
Sbjct: 4 ISEWLQKLDDALDKVVAKKEP------ESFLKPIISPIEDYQKSVRQIQAQFTDAPKFNE 57
Query: 133 E 133
E
Sbjct: 58 E 58
>ref|NP_224190.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 271
Score = 22.3 bits (46), Expect = 5.5
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
Query: 41 AEIKDS----LAKIKTDNAQSVEIGHQIEALLKEAAEKRREIIAEAIQKA 86
+E KDS L + DNAQ I IEAL +EK R+ I + + A
Sbjct: 220 SEDKDSPYANLVASREDNAQDEAIKALIEAL---QSEKTRKFILDTYKGA 266
>ref|NP_223664.1| putative [Helicobacter pylori J99]
Length = 466
Score = 22.3 bits (46), Expect = 5.5
Identities = 8/22 (36%), Positives = 15/22 (67%)
Query: 103 QEFEAFAKQLQNEKQALKEQLQ 124
++ ++FAKQ+Q + +KE Q
Sbjct: 107 EKIQSFAKQVQANTERIKENAQ 128
>ref|NP_223574.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2399
Score = 22.3 bits (46), Expect = 5.5
Identities = 17/46 (36%), Positives = 21/46 (44%), Gaps = 4/46 (8%)
Query: 84 QKATESYDAVIKQKENEL----NQEFEAFAKQLQNEKQALKEQLQA 125
+KA E A IKQ N Q F KQ Q ++QAL+ A
Sbjct: 503 EKALEKDLAQIKQLANSTTGFNEQAFTQAQKQEQQDEQALQNDENA 548
>ref|NP_222948.1| putative [Helicobacter pylori J99]
Length = 94
Score = 22.3 bits (46), Expect = 5.5
Identities = 8/30 (26%), Positives = 24/30 (79%), Gaps = 1/30 (3%)
Query: 97 KENELNQEFEAFAKQLQNEKQALKEQLQAQ 126
++ +L + FE+FAK L+ +++ L+++++++
Sbjct: 49 EKEDLEERFESFAKALRMDEE-LQQKIESR 77
>ref|NP_222920.1| GLUCOSE INHIBITED DIVISION PROTEIN A [Helicobacter pylori J99]
Length = 621
Score = 22.3 bits (46), Expect = 5.5
Identities = 8/17 (47%), Positives = 14/17 (82%)
Query: 108 FAKQLQNEKQALKEQLQ 124
F K+L+ +KQA++E L+
Sbjct: 459 FYKELEKDKQAIQENLK 475
>ref|NP_222891.1| LYSYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 501
Score = 22.3 bits (46), Expect = 5.5
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 98 ENELNQEFEAFAKQLQ 113
+NELN EF++ K L+
Sbjct: 91 QNELNDEFKSLKKHLE 106
>ref|NP_222831.1| putative [Helicobacter pylori J99]
Length = 412
Score = 22.3 bits (46), Expect = 5.5
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 72 AEKRREIIAEAIQKATESYDAVIKQKENELNQEFEAFAKQLQNEKQALKEQLQ 124
AE+ R+ + QKA +S + +QK+ +N + + ++ +K +KE Q
Sbjct: 185 AEQERQKTEQEKQKANKSEIELEQQKQKTINTQRDL----IKEQKDFIKETEQ 233
>ref|NP_223836.1| 30S RIBOSOMAL PROTEIN S7 [Helicobacter pylori J99]
Length = 155
Score = 21.9 bits (45), Expect = 7.2
Identities = 15/63 (23%), Positives = 29/63 (45%), Gaps = 2/63 (3%)
Query: 49 KIKTDNAQSVEIGHQIEALLKEAAEKRREIIAEAIQKATESYDAVIKQKE--NELNQEFE 106
+++ QS+ I +EA K + +A + A A K+KE +++ + +
Sbjct: 89 EVRASRQQSLSIRWILEATRKRNERMMVDRLANELMDAASDKGAAFKKKEDVHKMAEANK 148
Query: 107 AFA 109
AFA
Sbjct: 149 AFA 151
>ref|NP_223618.1| putative [Helicobacter pylori J99]
Length = 340
Score = 21.6 bits (44), Expect = 9.3
Identities = 21/107 (19%), Positives = 45/107 (41%), Gaps = 9/107 (8%)
Query: 24 MNVWVYRPLLAFMDNRQAEIKDSLAKIKTDNAQSVEIGHQIEALLKEAAEKRREIIAEAI 83
+N + L + +++ + +L +IK + +I E L E+ + ++
Sbjct: 56 LNSQLQNSLKSVIESFDYSKEKALEEIKALDLGVKDIEKTYEKLRANLEEEYSSVAVNSV 115
Query: 84 QKAT-------ESYDAVIKQKENELNQEFEAFAKQ--LQNEKQALKE 121
K + Y A + K NE N E E+ +Q ++N K +++
Sbjct: 116 VKKVIEEVRDQKPYLASLINKPNEFNSEIESIMQQNLIKNAKLEIEK 162
>ref|NP_222858.1| putative [Helicobacter pylori J99]
Length = 197
Score = 21.6 bits (44), Expect = 9.3
Identities = 24/123 (19%), Positives = 49/123 (39%), Gaps = 3/123 (2%)
Query: 9 LMAVVFVVFVLLLWAMNVWVYRPLLAFMDNRQAEIKDSLAK---IKTDNAQSVEIGHQIE 65
L V+ +VFV LWA +V+ + + + ++K +KT ++++ +
Sbjct: 4 LWLVISLVFVGFLWANESYVFNNSKGRLTEKSVAFIEGVSKELYLKTGVRFAIDMTDFEK 63
Query: 66 ALLKEAAEKRREIIAEAIQKATESYDAVIKQKENELNQEFEAFAKQLQNEKQALKEQLQA 125
+ A +K R+ E K + V + E A K L + + E++
Sbjct: 64 NPIALANKKERQSYQEGFLKQLKPPFVVFFFYHDAQKIELVANPKDLLDTDKIFFEKIAP 123
Query: 126 QMP 128
+P
Sbjct: 124 LLP 126
>ref|NP_222723.1| TRANSCRIPTION TERMINATION [Helicobacter pylori J99]
Length = 138
Score = 21.6 bits (44), Expect = 9.3
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 102 NQEFEAFAKQLQNEKQALKEQLQAQMPVFEDELNK 136
N+E + A + EK+ QL + +F L K
Sbjct: 22 NEEIKKIASSMLEEKKIKNNQLAFALSLFNGVLEK 56
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.317 0.130 0.349
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 132,843
Number of Sequences: 1491
Number of extensions: 5249
Number of successful extensions: 65
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 26
Number of HSP's gapped (non-prelim): 46
length of query: 144
length of database: 494,079
effective HSP length: 70
effective length of query: 74
effective length of database: 389,709
effective search space: 28838466
effective search space used: 28838466
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 44 (21.6 bits)