BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645758|ref|NP_207935.1| hypothetical protein
[Helicobacter pylori 26695]
(85 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223789.1| putative [Helicobacter pylori J99] 99 2e-23
ref|NP_223739.1| putative Outer membrane protein [Helicobac... 28 0.034
ref|NP_224033.1| FLAGELLUM-SPECIFIC ATP SYNTHASE [Helicobac... 25 0.28
ref|NP_224060.1| putative [Helicobacter pylori J99] 24 0.48
ref|NP_222995.1| putative vacuolating cytotoxin (VacA) para... 23 1.1
ref|NP_223848.1| putative [Helicobacter pylori J99] 22 2.4
ref|NP_223744.1| GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE [Helic... 22 2.4
ref|NP_223963.1| FUMARASE [Helicobacter pylori J99] 22 3.1
ref|NP_223796.1| putative SIGNAL RECOGNITION PARTICLE PROTE... 22 3.1
ref|NP_224156.1| DNA POLYMERASE III [Helicobacter pylori J99] 21 5.3
ref|NP_223468.1| MOLYBDOPTERIN-SYNTHASE SULFURYLASE [Helico... 21 5.3
ref|NP_223861.1| D-LACTATE DEHYDROGENASE [Helicobacter pylo... 20 7.0
ref|NP_223239.1| RIBOSE 5-PHOSPHATE ISOMERASE [Helicobacter... 20 7.0
ref|NP_222934.1| putative [Helicobacter pylori J99] 20 7.0
ref|NP_224007.1| UDP-N-ACETYLGLUCOSAMINE ACYLTRANSFERASE [H... 20 9.1
ref|NP_223793.1| putative [Helicobacter pylori J99] 20 9.1
ref|NP_223315.1| PHOSPHOSERINE PHOSPHATASE [Helicobacter py... 20 9.1
>ref|NP_223789.1| putative [Helicobacter pylori J99]
Length = 97
Score = 99.0 bits (245), Expect = 2e-23
Identities = 54/75 (72%), Positives = 56/75 (74%), Gaps = 7/75 (9%)
Query: 1 MGRSLALALQKASISRFASVHRAPLINHFLEQVILQSPSDENKNIKTIAFGGVIKLNPHN 60
M RSLALALQK SI R S HR LINHFLEQVILQ NIKTIAF G+IKL PHN
Sbjct: 19 MERSLALALQKVSIPRSTSAHRTLLINHFLEQVILQ-------NIKTIAFRGIIKLTPHN 71
Query: 61 RNPLLKPYSAFIALS 75
NPLLKPYSAFI L+
Sbjct: 72 ENPLLKPYSAFITLN 86
>ref|NP_223739.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 511
Score = 28.1 bits (61), Expect = 0.034
Identities = 18/64 (28%), Positives = 31/64 (48%)
Query: 9 LQKASISRFASVHRAPLINHFLEQVILQSPSDENKNIKTIAFGGVIKLNPHNRNPLLKPY 68
L K +RF+++ + ++ F QS +D N + I+ GV+K N N L +
Sbjct: 317 LNKDLKARFSNISTSKALDLFHYPKFFQSIADANLDYDLISKQGVLKANLKNARFLKNAF 376
Query: 69 SAFI 72
S F+
Sbjct: 377 SDFL 380
>ref|NP_224033.1| FLAGELLUM-SPECIFIC ATP SYNTHASE [Helicobacter pylori J99]
Length = 434
Score = 25.0 bits (53), Expect = 0.28
Identities = 12/42 (28%), Positives = 22/42 (51%)
Query: 38 PSDENKNIKTIAFGGVIKLNPHNRNPLLKPYSAFIALSCTQF 79
P KN+K V+ + + +PL++ Y AF A+S ++
Sbjct: 199 PEFIEKNLKGDLSSCVLVVATSDDSPLMRKYGAFCAMSVAEY 240
>ref|NP_224060.1| putative [Helicobacter pylori J99]
Length = 118
Score = 24.3 bits (51), Expect = 0.48
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 7 LALQKASISRFASVHRAPLINHFLEQVILQSPSDENKNIKTIAF 50
+A++ S + F S A +LQS D N+N KTI F
Sbjct: 58 IAIRILSCNPFCSGGIAYPTTRLKRPSLLQSHKDFNRNFKTITF 101
>ref|NP_222995.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2902
Score = 23.1 bits (48), Expect = 1.1
Identities = 13/44 (29%), Positives = 19/44 (42%)
Query: 35 LQSPSDENKNIKTIAFGGVIKLNPHNRNPLLKPYSAFIALSCTQ 78
L S N N+ + +K+N N N + + FI SC Q
Sbjct: 2157 LLSNQVSNINVTMLNASNGLKINATNNNVSVSQGNLFINASCVQ 2200
>ref|NP_223848.1| putative [Helicobacter pylori J99]
Length = 222
Score = 21.9 bits (45), Expect = 2.4
Identities = 12/53 (22%), Positives = 23/53 (42%)
Query: 20 VHRAPLINHFLEQVILQSPSDENKNIKTIAFGGVIKLNPHNRNPLLKPYSAFI 72
+ R I +F +++ + E + + FG +I+ +R L AFI
Sbjct: 53 ISRNEKIQYFYNEILKTPIAQEEIDALALEFGAIIEQKLFDRGHLNSEVMAFI 105
>ref|NP_223744.1| GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE [Helicobacter pylori J99]
Length = 425
Score = 21.9 bits (45), Expect = 2.4
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 56 LNPHNRNPLLKPYSAFIALSCTQFHYS 82
L HN+ L+PY+ + + HY+
Sbjct: 352 LETHNKQEFLQPYAKLLYDAIPNNHYN 378
>ref|NP_223963.1| FUMARASE [Helicobacter pylori J99]
Length = 463
Score = 21.6 bits (44), Expect = 3.1
Identities = 13/45 (28%), Positives = 24/45 (52%)
Query: 1 MGRSLALALQKASISRFASVHRAPLINHFLEQVILQSPSDENKNI 45
MG A+ + + + +V + +I +FL+ + L S S E+ NI
Sbjct: 340 MGNDTAIGIAASQGNFELNVFKPVIIYNFLQSLRLLSDSMESFNI 384
>ref|NP_223796.1| putative SIGNAL RECOGNITION PARTICLE PROTEIN [Helicobacter pylori
J99]
Length = 448
Score = 21.6 bits (44), Expect = 3.1
Identities = 12/36 (33%), Positives = 22/36 (60%), Gaps = 3/36 (8%)
Query: 14 ISRFASVHRAPLINHFLEQVILQSPSDENKNIKTIA 49
+ R A+V + ++ EQV ++ +ENK++K IA
Sbjct: 132 LQRLAAVEQLKVLG---EQVGVEVFHEENKSVKEIA 164
>ref|NP_224156.1| DNA POLYMERASE III [Helicobacter pylori J99]
Length = 323
Score = 20.8 bits (42), Expect = 5.3
Identities = 13/29 (44%), Positives = 15/29 (50%)
Query: 40 DENKNIKTIAFGGVIKLNPHNRNPLLKPY 68
+ NK F GVI LNP + LLK Y
Sbjct: 7 NSNKRAWMWWFQGVIFLNPKIVSWLLKAY 35
>ref|NP_223468.1| MOLYBDOPTERIN-SYNTHASE SULFURYLASE [Helicobacter pylori J99]
Length = 255
Score = 20.8 bits (42), Expect = 5.3
Identities = 14/53 (26%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Query: 20 VHRAPLINHFLEQVILQSPSDENKNIKTIAFGGVIKLNPHNRNPLLKPYSAFI 72
+H +NH N I+ F K HN PL++PY I
Sbjct: 74 IHSQDCLNHSKASSAKARLKQLNAGIEVETFEERFKA--HNALPLIEPYDFII 124
>ref|NP_223861.1| D-LACTATE DEHYDROGENASE [Helicobacter pylori J99]
Length = 946
Score = 20.4 bits (41), Expect = 7.0
Identities = 10/26 (38%), Positives = 11/26 (41%)
Query: 56 LNPHNRNPLLKPYSAFIALSCTQFHY 81
+ PHN L K FI FHY
Sbjct: 670 IGPHNLVSLTKGIKKFIKPFPKAFHY 695
>ref|NP_223239.1| RIBOSE 5-PHOSPHATE ISOMERASE [Helicobacter pylori J99]
Length = 151
Score = 20.4 bits (41), Expect = 7.0
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 15 SRFASVHRAPLINHFLE 31
S A +H A + HFLE
Sbjct: 14 SDHAGLHLAEFVKHFLE 30
>ref|NP_222934.1| putative [Helicobacter pylori J99]
Length = 385
Score = 20.4 bits (41), Expect = 7.0
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 30 LEQVILQSPSDENKNIKTIAFGGVI 54
L+ ++ SD+NK K G +I
Sbjct: 240 LDVILKDGVSDKNKETKAQGLGNII 264
>ref|NP_224007.1| UDP-N-ACETYLGLUCOSAMINE ACYLTRANSFERASE [Helicobacter pylori J99]
Length = 270
Score = 20.0 bits (40), Expect = 9.1
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 54 IKLNPHNRNPLLKPYSAFIALSCTQFHYSA 83
++L H NP +K +FI S Y +
Sbjct: 230 LELEEHANNPFVKEICSFILESSRGVAYKS 259
>ref|NP_223793.1| putative [Helicobacter pylori J99]
Length = 181
Score = 20.0 bits (40), Expect = 9.1
Identities = 7/31 (22%), Positives = 16/31 (51%)
Query: 18 ASVHRAPLINHFLEQVILQSPSDENKNIKTI 48
A + P + ++++++LQ N KT+
Sbjct: 147 AKIFLIPYRDFYIQEILLQDKKITTHNAKTL 177
>ref|NP_223315.1| PHOSPHOSERINE PHOSPHATASE [Helicobacter pylori J99]
Length = 207
Score = 20.0 bits (40), Expect = 9.1
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 41 ENKNIKTIAFGGVIKLNPHNRNPLLKPYSAF 71
+ KN K + F G L ++ LL +AF
Sbjct: 86 KEKNYKVVCFSGGFDLATNHYRDLLNLDAAF 116
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.323 0.134 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,756
Number of Sequences: 1491
Number of extensions: 3046
Number of successful extensions: 18
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of query: 85
length of database: 494,079
effective HSP length: 61
effective length of query: 24
effective length of database: 403,128
effective search space: 9675072
effective search space used: 9675072
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 40 (20.0 bits)