BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645759|ref|NP_207936.1| hypothetical protein
[Helicobacter pylori 26695]
(103 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223790.1| putative [Helicobacter pylori J99] 196 1e-52
ref|NP_223530.1| putative [Helicobacter pylori J99] 50 2e-08
ref|NP_224040.1| DIMETHYLADENOSINE TRANSFERASE [Helicobacte... 26 0.26
ref|NP_223428.1| putative [Helicobacter pylori J99] 25 0.44
ref|NP_223506.1| putative [Helicobacter pylori J99] 24 0.75
ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter ... 23 1.3
ref|NP_223913.1| FLAGELLAR FUNCTIONAL PROTEIN [Helicobacter... 23 1.7
ref|NP_223832.1| HISTIDYL-TRNA SYNTHETASE [Helicobacter pyl... 23 1.7
ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATE... 23 1.7
ref|NP_222935.1| Outer membrane protein/porin [Helicobacter... 22 2.9
ref|NP_223296.1| putative [Helicobacter pylori J99] 22 3.7
ref|NP_223265.1| putative secretion/efflux abc transporter,... 22 3.7
ref|NP_224023.1| putative [Helicobacter pylori J99] 21 6.4
ref|NP_223876.1| CARBAMOYL-PHOSPHATE SYNTHASE SMALL CHAIN [... 21 6.4
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 21 6.4
ref|NP_223124.1| PROTEASE DO [Helicobacter pylori J99] 21 6.4
ref|NP_222982.1| putative [Helicobacter pylori J99] 21 6.4
ref|NP_223867.1| putative DGTP PYROPHOSPHOHYDROLASE [Helico... 21 8.3
ref|NP_223645.1| putative [Helicobacter pylori J99] 21 8.3
ref|NP_223442.1| putative [Helicobacter pylori J99] 21 8.3
>ref|NP_223790.1| putative [Helicobacter pylori J99]
Length = 285
Score = 196 bits (498), Expect = 1e-52
Identities = 94/102 (92%), Positives = 97/102 (94%)
Query: 2 HDITKLCYTKPLGCVVLFSKDTDLVPVLESAWEKGFEVFIANIQECPNSVPSDLKKSCNV 61
HDITKL TKPLGCVVLFSKDTD VPVLE+AWEKGFEVFIANIQE PNSVPSDLKKSCNV
Sbjct: 184 HDITKLYCTKPLGCVVLFSKDTDFVPVLEAAWEKGFEVFIANIQESPNSVPSDLKKSCNV 243
Query: 62 RERSVAEIVDNLPKNQHTPKKKNFSTNEPFNNPFKDQLFKKN 103
RER+VAEIVDNLPKNQ+TPKKKNFS NEPFNNPFKDQLFKKN
Sbjct: 244 RERNVAEIVDNLPKNQYTPKKKNFSPNEPFNNPFKDQLFKKN 285
>ref|NP_223530.1| putative [Helicobacter pylori J99]
Length = 243
Score = 49.7 bits (117), Expect = 2e-08
Identities = 30/87 (34%), Positives = 49/87 (55%), Gaps = 1/87 (1%)
Query: 3 DITKLCYTKPLGCVVLFSKDTDLVPVLESAWEKGFEVFIANIQECPNSVPSDLK-KSCNV 61
DI ++ + K +++FSKDTDL+P L+ A ++G V IA++ + + DLK S V
Sbjct: 157 DIQRIAFKKIADRILIFSKDTDLIPALKLARDEGLRVDIADLSNRLSLLSQDLKYNSDKV 216
Query: 62 RERSVAEIVDNLPKNQHTPKKKNFSTN 88
R+ S E+ D L + K N++ N
Sbjct: 217 RKLSSNEVKDKLFSIRENLTKTNWALN 243
>ref|NP_224040.1| DIMETHYLADENOSINE TRANSFERASE [Helicobacter pylori J99]
Length = 271
Score = 25.8 bits (55), Expect = 0.26
Identities = 19/58 (32%), Positives = 34/58 (57%), Gaps = 6/58 (10%)
Query: 27 PVLESAWEKGFEVFIANIQECPNS----VPSDLKKSCNVRERSVAEIVDNLP-KNQHT 79
P E A +KGFE ++ C +S + ++LKKS + +E+ + +++D L +NQ T
Sbjct: 195 PFFEEALQKGFETLEDFLKACFSSPRKTLSNNLKKSVSYKEK-LDKVLDFLALENQPT 251
>ref|NP_223428.1| putative [Helicobacter pylori J99]
Length = 363
Score = 25.0 bits (53), Expect = 0.44
Identities = 17/56 (30%), Positives = 27/56 (47%), Gaps = 2/56 (3%)
Query: 6 KLCYTKPLGCVVLFSKDTDLVPVLESAWEKGFEVFIANIQECPNSVPSDLKKSCNV 61
K+C KPLG +L++ + D VL + E G + I P ++P K +V
Sbjct: 89 KICGNKPLGANILYAIN-DYGRVLRDSCEAGANIIITG-AGLPTNMPEFAKDFSDV 142
>ref|NP_223506.1| putative [Helicobacter pylori J99]
Length = 313
Score = 24.3 bits (51), Expect = 0.75
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 16 VVLFSKDTDLVPVLESAWEKGFEVFIANIQEC 47
++ FSK D +P+ ++E E+ + N +EC
Sbjct: 169 LIAFSKKFDTLPIKLVSFELKKEISVHNCREC 200
>ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 969
Score = 23.5 bits (49), Expect = 1.3
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 53 SDLKKSCNVRERSVAEIVDNLPKNQHTPKKKN 84
S L + +SVA++++N+ +N+ KKN
Sbjct: 744 SALSNKVKLSFKSVAKVLENIDENKFNEIKKN 775
>ref|NP_223913.1| FLAGELLAR FUNCTIONAL PROTEIN [Helicobacter pylori J99]
Length = 803
Score = 23.1 bits (48), Expect = 1.7
Identities = 14/54 (25%), Positives = 26/54 (47%), Gaps = 7/54 (12%)
Query: 34 EKGFEVFIANIQECPNSVPSDLKKSCNV--RERSVAEIVDNLPKNQHTPKKKNF 85
+K F AN PS ++ S ++ +R + ++D++PK TP + F
Sbjct: 45 DKAFSCSYAN-----EKPPSGIEASLSIIHAKRPIECVIDSIPKEGFTPLENAF 93
>ref|NP_223832.1| HISTIDYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 442
Score = 23.1 bits (48), Expect = 1.7
Identities = 10/53 (18%), Positives = 24/53 (44%)
Query: 49 NSVPSDLKKSCNVRERSVAEIVDNLPKNQHTPKKKNFSTNEPFNNPFKDQLFK 101
N V +LKK C++ ++ ++++ + Q+ F + + + L K
Sbjct: 194 NGVEEELKKECDLDSNTIKDLLEMVQIKQNDLSHAEFFEKIAYLKDYNENLKK 246
>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN
[Helicobacter pylori J99]
Length = 1167
Score = 23.1 bits (48), Expect = 1.7
Identities = 14/47 (29%), Positives = 20/47 (41%), Gaps = 3/47 (6%)
Query: 54 DLKKSCNVRERSVAEIVDNLPKNQHTPKKKNFSTNEPFNNPFKDQLF 100
DL+KS RER ++ NL K + N KD++F
Sbjct: 617 DLEKSLKKRERLEKDVAKNLESKSGNKNKMEAKSQA---NSQKDEIF 660
Score = 22.7 bits (47), Expect = 2.2
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 54 DLKKSCNVRERSVAEIVDNLPKNQHTPKKKNFSTNEPFNNPFKDQLFKKN 103
DL K RE+ + + +DNL + K +F + + KD KKN
Sbjct: 973 DLSKVGLSREQKLTQKIDNLNQAVSEAKASHFDNLDQMIDKLKDST-KKN 1021
>ref|NP_222935.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 483
Score = 22.3 bits (46), Expect = 2.9
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 53 SDLKKSCNVRERSVAEIVDNLPKNQHTPKKKNFSTNE 89
++LK++ + + S A+ +DNL K+ K + N+
Sbjct: 60 NELKQTASNTDSSTAQAIDNLEKSASRLKTTPNTANQ 96
>ref|NP_223296.1| putative [Helicobacter pylori J99]
Length = 512
Score = 21.9 bits (45), Expect = 3.7
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 68 EIVDNLPKNQHTPKKKNFSTNEPFNNPFKDQL 99
E + PK TP K N PFKD+L
Sbjct: 261 EALFKTPKRLITPTKNFVLENHLSTLPFKDEL 292
>ref|NP_223265.1| putative secretion/efflux abc transporter, ATP-binding protein
[Helicobacter pylori J99]
Length = 589
Score = 21.9 bits (45), Expect = 3.7
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 5 TKLCYTKPLGCVVLFSKDTDLVPVLE 30
T + KP C+VL + + P++E
Sbjct: 499 TMRAFLKPSNCIVLDEPSSAIDPIME 524
>ref|NP_224023.1| putative [Helicobacter pylori J99]
Length = 243
Score = 21.2 bits (43), Expect = 6.4
Identities = 7/23 (30%), Positives = 15/23 (64%)
Query: 49 NSVPSDLKKSCNVRERSVAEIVD 71
N + +DLK+ V +R++ ++D
Sbjct: 64 NKIANDLKRDKIVDKRTILSVID 86
>ref|NP_223876.1| CARBAMOYL-PHOSPHATE SYNTHASE SMALL CHAIN [Helicobacter pylori J99]
Length = 375
Score = 21.2 bits (43), Expect = 6.4
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 68 EIVDNLPKNQHTPKKKNFST 87
E++ N PK H+P + ST
Sbjct: 140 EVLKNAPKISHSPLVSSVST 159
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 21.2 bits (43), Expect = 6.4
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 71 DNLPKNQHTPKKKNFSTNEPFNNPFKDQLFKK 102
D L + Q T+E N D+LFKK
Sbjct: 61 DKLEETQTQMDSGGNETSESSNGSLADKLFKK 92
>ref|NP_223124.1| PROTEASE DO [Helicobacter pylori J99]
Length = 476
Score = 21.2 bits (43), Expect = 6.4
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 82 KKNFSTNEPFNNPFKDQLF 100
K NF FN+PF Q F
Sbjct: 66 KNNFIGGGVFNDPFFQQFF 84
>ref|NP_222982.1| putative [Helicobacter pylori J99]
Length = 185
Score = 21.2 bits (43), Expect = 6.4
Identities = 8/18 (44%), Positives = 11/18 (60%)
Query: 24 DLVPVLESAWEKGFEVFI 41
DL ++E AW G VF+
Sbjct: 133 DLKGMVEFAWRLGLSVFV 150
>ref|NP_223867.1| putative DGTP PYROPHOSPHOHYDROLASE [Helicobacter pylori J99]
Length = 157
Score = 20.8 bits (42), Expect = 8.3
Identities = 10/38 (26%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
Query: 70 VDNLPKNQHTPKKKNFSTNEPFN-----NPFKDQLFKK 102
V+N+ N+HTP+ +++ + + PFK Q++++
Sbjct: 107 VNNIDLNKHTPEFRSYQFIQLKDLLKKIVPFKRQVYRQ 144
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 20.8 bits (42), Expect = 8.3
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 29 LESAWEKGFEVFIANIQECPNSVPSDLK 56
++ A +G E AN+++ +P DLK
Sbjct: 1130 VKEAINQGVEGLEANVKDLELIIPKDLK 1157
>ref|NP_223442.1| putative [Helicobacter pylori J99]
Length = 410
Score = 20.8 bits (42), Expect = 8.3
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 8/34 (23%)
Query: 62 RERSVAEIVDNLPKNQHTPKKKNFSTNEPFNNPF 95
+ER + E++++ KN + N+ F NPF
Sbjct: 122 KERHINEVLNDA--------LKNINENDLFKNPF 147
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.316 0.134 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 123,114
Number of Sequences: 1491
Number of extensions: 5073
Number of successful extensions: 25
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 21
length of query: 103
length of database: 494,079
effective HSP length: 65
effective length of query: 38
effective length of database: 397,164
effective search space: 15092232
effective search space used: 15092232
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 42 (20.8 bits)