BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645760|ref|NP_207937.1| hypothetical protein
[Helicobacter pylori 26695]
(169 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223790.1| putative [Helicobacter pylori J99] 251 1e-68
ref|NP_223530.1| putative [Helicobacter pylori J99] 64 3e-12
ref|NP_223629.1| putative [Helicobacter pylori J99] 26 0.65
ref|NP_222726.1| Carbonic anhydrase [Helicobacter pylori J99] 26 0.65
ref|NP_224044.1| putative [Helicobacter pylori J99] 25 0.85
ref|NP_223234.1| putative [Helicobacter pylori J99] 25 0.85
ref|NP_223820.1| putative Outer membrane function [Helicoba... 25 1.1
ref|NP_224018.1| putative [Helicobacter pylori J99] 24 2.5
ref|NP_222839.1| putative [Helicobacter pylori J99] 24 2.5
ref|NP_222832.1| PHOSPHOENOLPYRUVATE SYNTHASE [Helicobacter... 24 2.5
ref|NP_222754.1| putative [Helicobacter pylori J99] 24 2.5
ref|NP_223222.1| ACETYL-COENZYME A CARBOXYLASE SUBUNIT A [H... 23 3.2
ref|NP_223063.1| putative [Helicobacter pylori J99] 23 3.2
ref|NP_222964.1| EXODEOXYRIBONUCLEASE LARGE SUBUNIT [Helico... 23 4.2
ref|NP_223698.1| LYSIS TOLERANCE PROTEIN [Helicobacter pylo... 23 5.5
ref|NP_222733.1| putative [Helicobacter pylori J99] 23 5.5
ref|NP_224000.1| putative histidine kinase sensor protein [... 22 7.2
ref|NP_223084.1| putative [Helicobacter pylori J99] 22 7.2
ref|NP_224160.1| TYPE II RESTRICTION ENZYME [Helicobacter p... 22 9.4
ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEI... 22 9.4
ref|NP_223632.1| putative [Helicobacter pylori J99] 22 9.4
ref|NP_223619.1| putative [Helicobacter pylori J99] 22 9.4
ref|NP_223103.1| 30S RIBOSOMAL PROTEIN S15 [Helicobacter py... 22 9.4
ref|NP_222776.1| putative [Helicobacter pylori J99] 22 9.4
>ref|NP_223790.1| putative [Helicobacter pylori J99]
Length = 285
Score = 251 bits (640), Expect = 1e-68
Identities = 127/158 (80%), Positives = 135/158 (85%), Gaps = 4/158 (2%)
Query: 14 MFKSPCYTY----GKIHILGESMEKTETTIFVDWENLLADLKAIQETDERLKEPNFNFNN 69
MF+SPCYT K ++M KTETTIFVDWENLLADLKAIQETDERLKE NFNFNN
Sbjct: 1 MFRSPCYTQPLCVAKFLFFRKNMGKTETTIFVDWENLLADLKAIQETDERLKESNFNFNN 60
Query: 70 PEQLLVLIRSFLEPEEELKRIYFYVSEPFTEVEPRIKGNKNEELEEYKEKNPKDYEERVN 129
PEQLL LIRSFLEPEEELKRIYFYVSEPFTEVEPRIK NK EELEEYKEKNPK+YEE+VN
Sbjct: 61 PEQLLALIRSFLEPEEELKRIYFYVSEPFTEVEPRIKSNKKEELEEYKEKNPKEYEEKVN 120
Query: 130 KSGIIQSFNHNIAQQNQVKLRVGRVMFKFTNESEDKEV 167
KSGIIQSFNH IAQQNQVKLRVGRV F F + +D+ V
Sbjct: 121 KSGIIQSFNHAIAQQNQVKLRVGRVRFMFKDMPKDQRV 158
>ref|NP_223530.1| putative [Helicobacter pylori J99]
Length = 243
Score = 63.5 bits (153), Expect = 3e-12
Identities = 45/138 (32%), Positives = 68/138 (48%), Gaps = 30/138 (21%)
Query: 34 KTETTIFVDWENLLADLKAIQETDERLKEPNFNFNNPEQLLVLIRSFLEPEEELKRIYFY 93
K T I VDWEN D+K + N+N ++V IR+FL +E + RIYFY
Sbjct: 2 KANTIILVDWENFRRDIKQTKCV---------NYNIALDVIVTIRAFLLDDEWISRIYFY 52
Query: 94 VSEPFTEVEPRIKGNKNEELEEYKEKNP---------KDYEERVNKS---------GIIQ 135
+ PF + E + +N+ L+ EKNP D EE + S ++
Sbjct: 53 TTPPF-DFEHALWDKRNDTLQ--NEKNPGTEMKIFTSSDIEEILQSSEATKWEKIYSDVE 109
Query: 136 SFNHNIAQQNQVKLRVGR 153
+F H++A +QV+LR+GR
Sbjct: 110 NFQHDLASLDQVELRLGR 127
>ref|NP_223629.1| putative [Helicobacter pylori J99]
Length = 487
Score = 25.8 bits (55), Expect = 0.65
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 16/75 (21%)
Query: 84 EEELKRIYFYVSEPFTE----------VEPRIKGNKNEELEEYKEKNPKDYEERVNKSGI 133
EEE+K+ Y + F + + ++ +ELEEY KN Y ++K G
Sbjct: 207 EEEMKKYYENHRKDFKKPTSFKTRSLYFDASLEKTDLKELEEYYHKNKVSY---LDKEGK 263
Query: 134 IQSFNHNIAQQNQVK 148
+Q F + Q QVK
Sbjct: 264 LQDFK---SVQEQVK 275
>ref|NP_222726.1| Carbonic anhydrase [Helicobacter pylori J99]
Length = 221
Score = 25.8 bits (55), Expect = 0.65
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 17 SPCYTYGKIHILGESMEKTETTIFVDWENLLADLKAIQETDERLKEPNFN 66
S C G IH++ + K +T +W L +K +E P F+
Sbjct: 100 SDCGACGSIHLIHDETTKAKTPYIANWIQFLEPIK-----EELKNHPQFS 144
>ref|NP_224044.1| putative [Helicobacter pylori J99]
Length = 792
Score = 25.4 bits (54), Expect = 0.85
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 60 LKEPNFNFNNPEQLLVLIRSFLEPEEELKRIYFYVSEPFTEV----EPRIKGNKNEELEE 115
L + F+ P+ L + L+ EE+ K++ Y++ P+ E P G KN++L
Sbjct: 354 LNDDFFSDKTPKSL----QEILKDEEKRKKLIIYINPPYAEATSAKTPSGTG-KNKDLVA 408
Query: 116 YKEKNPKDYEERVNKS 131
K Y++ ++K+
Sbjct: 409 RGNLICKKYKDELHKA 424
>ref|NP_223234.1| putative [Helicobacter pylori J99]
Length = 366
Score = 25.4 bits (54), Expect = 0.85
Identities = 17/91 (18%), Positives = 43/91 (46%), Gaps = 3/91 (3%)
Query: 19 CYTYGKIHILGESMEKTETTIFVDWENLLADLKAIQETDERLKEPNFNFNNPEQLL---V 75
C+ I + + ++ ++ E +LAD+ + + +RL++ + + + LL +
Sbjct: 107 CFEDDNITHVNDKIDPLNDIETIELELILADIATLDKRIDRLQKALKSSKDAKNLLECAL 166
Query: 76 LIRSFLEPEEELKRIYFYVSEPFTEVEPRIK 106
+++ LE + K SE F E++ ++
Sbjct: 167 SLKTHLEELKPAKTFPLNTSEAFLELDKELR 197
>ref|NP_223820.1| putative Outer membrane function [Helicobacter pylori J99]
Length = 643
Score = 25.0 bits (53), Expect = 1.1
Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 23/103 (22%)
Query: 51 KAIQETDE-------RLKEPN-FNFNNPEQLLVLIRSFLEPEEELKRIYFYVSEPFTEVE 102
K +QET + + +PN FN N+P L L +S L+ + I
Sbjct: 311 KIVQETQQLNANQPKNITQPNNFNLNSPGSLTALAQSMLKNAQSQTEIL----------- 359
Query: 103 PRIKGNKNEELEEYKEKNPKDYEERVNKSGIIQSFNHNIAQQN 145
++ + ++ KDY + + SG+ S N+ QN
Sbjct: 360 -KLANQVASDFDKLSSGYLKDYIGKCDVSGVSSS---NMTPQN 398
>ref|NP_224018.1| putative [Helicobacter pylori J99]
Length = 178
Score = 23.9 bits (50), Expect = 2.5
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 133 IIQSFNHNIAQQNQVKLRVGRVMFKFT 159
IIQSFNH+I Q + + + ++ FT
Sbjct: 35 IIQSFNHSIIQPFKQRYLIFITIYLFT 61
Score = 22.3 bits (46), Expect = 7.2
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 133 IIQSFNHNIAQ 143
IIQSFNH+I Q
Sbjct: 27 IIQSFNHSIIQ 37
>ref|NP_222839.1| putative [Helicobacter pylori J99]
Length = 143
Score = 23.9 bits (50), Expect = 2.5
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 94 VSEPFTEVEPRIKGNKNEELEEYKEKNPKDYEERVNKS 131
V E TEV R++ K EE ++YK D+++ ++K+
Sbjct: 44 VPEFRTEVNKRLEAMKEEERQKYK----ADFKKAMDKN 77
>ref|NP_222832.1| PHOSPHOENOLPYRUVATE SYNTHASE [Helicobacter pylori J99]
Length = 812
Score = 23.9 bits (50), Expect = 2.5
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 114 EEYKEKNPKDYE-ERVNKSG---IIQSFNHNIAQQNQVKLRVGRVMFKFTNESEDKEVLI 169
+E K+ P D E + +SG I+Q+ + Q + FKF N +E KE+++
Sbjct: 310 KEAKQYRPMDIEWAKDGESGEIFIVQARPETVQSQKTKEENQVFEKFKFKNPNEKKEIIL 369
>ref|NP_222754.1| putative [Helicobacter pylori J99]
Length = 335
Score = 23.9 bits (50), Expect = 2.5
Identities = 15/65 (23%), Positives = 29/65 (44%)
Query: 84 EEELKRIYFYVSEPFTEVEPRIKGNKNEELEEYKEKNPKDYEERVNKSGIIQSFNHNIAQ 143
EE KR+ +PF P +K ++ + +YK + ++E V+ I +
Sbjct: 178 EERHKRLVVAQFDPFFPKNPFLKNDEILAINDYKIHSLAEFEWVVSNLSYQSLAKVKIKR 237
Query: 144 QNQVK 148
+Q+K
Sbjct: 238 NHQIK 242
>ref|NP_223222.1| ACETYL-COENZYME A CARBOXYLASE SUBUNIT A [Helicobacter pylori J99]
Length = 312
Score = 23.5 bits (49), Expect = 3.2
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 102 EPRIKGNKNEELEEYKEKNPKDYEERVNKSGIIQSFN 138
E + +G KN+ L + NP Y + + + + FN
Sbjct: 108 EEKGRGTKNKLLRNFGMPNPCGYRKALKMAKFAEKFN 144
>ref|NP_223063.1| putative [Helicobacter pylori J99]
Length = 207
Score = 23.5 bits (49), Expect = 3.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 39 IFVDWENLLADLKAIQETDERLKEPN 64
+F +E DLKAI+E ++ EPN
Sbjct: 89 VFFSFEESPKDLKAIKERLKKTIEPN 114
>ref|NP_222964.1| EXODEOXYRIBONUCLEASE LARGE SUBUNIT [Helicobacter pylori J99]
Length = 420
Score = 23.1 bits (48), Expect = 4.2
Identities = 13/32 (40%), Positives = 18/32 (55%), Gaps = 1/32 (3%)
Query: 100 EVEPRIKGNKNEELEEYKEK-NPKDYEERVNK 130
E+EP+ G+ LE+ KEK K Y + NK
Sbjct: 96 EIEPKEIGSLTLALEQLKEKLRLKGYFDEANK 127
>ref|NP_223698.1| LYSIS TOLERANCE PROTEIN [Helicobacter pylori J99]
Length = 274
Score = 22.7 bits (47), Expect = 5.5
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 8/42 (19%)
Query: 104 RIKGNKNEELEEYKEKNPKDYEERVNKSGIIQSFNHNIAQQN 145
R++ N N ++EE +K PK NKS II++ H I +Q+
Sbjct: 43 RLEKNFNVKIEEDPKKIPK------NKSVIIRT--HGIPKQD 76
>ref|NP_222733.1| putative [Helicobacter pylori J99]
Length = 350
Score = 22.7 bits (47), Expect = 5.5
Identities = 15/51 (29%), Positives = 23/51 (44%), Gaps = 6/51 (11%)
Query: 117 KEKNPKDYEERVNKSGIIQSFNHNIAQQNQVKLRVGRVMFKFTNESEDKEV 167
K KN K+Y E V + G+I + +L V R NE E+ ++
Sbjct: 231 KIKNLKEYREMVFEDGVIVKNGRYFVLPHNARLVVAR------NEEENHKL 275
>ref|NP_224000.1| putative histidine kinase sensor protein [Helicobacter pylori J99]
Length = 344
Score = 22.3 bits (46), Expect = 7.2
Identities = 12/34 (35%), Positives = 15/34 (43%)
Query: 57 DERLKEPNFNFNNPEQLLVLIRSFLEPEEELKRI 90
D LK N P LVL LE ++ +RI
Sbjct: 139 DHFLKNTTHELNTPMSALVLSLKTLEDNQQHRRI 172
>ref|NP_223084.1| putative [Helicobacter pylori J99]
Length = 160
Score = 22.3 bits (46), Expect = 7.2
Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 10/77 (12%)
Query: 85 EELKRIYFYVSEPFTEVEPRIKGNKNEELEEYK----------EKNPKDYEERVNKSGII 134
EE+K+ + F +KG K EELE+ K + +DY+ + + I
Sbjct: 57 EEIKKETLEYQKLFENKVESLKGVKIEELEDAKVTAENEIKSIQDLMQDYKRSLETNTIP 116
Query: 135 QSFNHNIAQQNQVKLRV 151
N ++ + + V
Sbjct: 117 NHLNEEVSNEEALNKEV 133
>ref|NP_224160.1| TYPE II RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 326
Score = 21.9 bits (45), Expect = 9.4
Identities = 13/44 (29%), Positives = 19/44 (42%)
Query: 4 EPLFYFKKQGMFKSPCYTYGKIHILGESMEKTETTIFVDWENLL 47
E YF+K G+ K + I L + E + WENL+
Sbjct: 212 EKALYFEKHGVKKEKGFELHHIVPLCLARSIEEFDLLDKWENLI 255
>ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEIN [Helicobacter pylori
J99]
Length = 280
Score = 21.9 bits (45), Expect = 9.4
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 96 EPFTEVEPRIKGNKNEELEEYKEKNPKDYEERVNKSGIIQSFNHNIAQQNQVKLRVGRVM 155
EP + EP+++ K EE +E + K + EE KS Q +I ++ + +
Sbjct: 116 EPKPKPEPKVEEPKKEEPKE-EPKKEEAKEEAKEKSVPKQVTTKDIVKEKDKQEESNKTS 174
Query: 156 FKFTNESE 163
T+E++
Sbjct: 175 EGATSEAQ 182
>ref|NP_223632.1| putative [Helicobacter pylori J99]
Length = 411
Score = 21.9 bits (45), Expect = 9.4
Identities = 10/19 (52%), Positives = 13/19 (67%)
Query: 62 EPNFNFNNPEQLLVLIRSF 80
EP+ FN + LLVL R+F
Sbjct: 227 EPSDTFNLKKTLLVLARAF 245
>ref|NP_223619.1| putative [Helicobacter pylori J99]
Length = 166
Score = 21.9 bits (45), Expect = 9.4
Identities = 7/23 (30%), Positives = 16/23 (69%)
Query: 20 YTYGKIHILGESMEKTETTIFVD 42
Y+Y K+++ E+++ + +FVD
Sbjct: 97 YSYLKVYLNNEALKDSAPLVFVD 119
>ref|NP_223103.1| 30S RIBOSOMAL PROTEIN S15 [Helicobacter pylori J99]
Length = 90
Score = 21.9 bits (45), Expect = 9.4
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 100 EVEPRIKGNKNEELEEYKEKNPKDYEERV 128
EV+ + + + L E+ + NPKD+ R+
Sbjct: 26 EVQVALLNERIKLLTEHLKTNPKDHSSRL 54
>ref|NP_222776.1| putative [Helicobacter pylori J99]
Length = 522
Score = 21.9 bits (45), Expect = 9.4
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 111 EELEEYKEKNPKDYEERVNKS 131
+ E KEK KDY ++ +K+
Sbjct: 409 QAFENAKEKQLKDYHQKTSKN 429
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.315 0.136 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 201,444
Number of Sequences: 1491
Number of extensions: 9958
Number of successful extensions: 50
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 27
Number of HSP's gapped (non-prelim): 26
length of query: 169
length of database: 494,079
effective HSP length: 71
effective length of query: 98
effective length of database: 388,218
effective search space: 38045364
effective search space used: 38045364
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)