BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645761|ref|NP_207938.1| ribosomal protein L19
(rpl19) [Helicobacter pylori 26695]
(118 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223791.1| 50S RIBOSOMAL PROTEIN L19. [Helicobacter p... 233 8e-64
ref|NP_224003.1| putative [Helicobacter pylori J99] 23 2.9
ref|NP_222915.1| putative lipopolysaccharide biosynthesis p... 23 2.9
ref|NP_222996.1| DIAMINOPIMELATE DECARBOXYLASE [Helicobacte... 22 3.8
ref|NP_224134.1| putative [Helicobacter pylori J99] 22 5.0
ref|NP_224195.1| putative [Helicobacter pylori J99] 22 6.5
>ref|NP_223791.1| 50S RIBOSOMAL PROTEIN L19. [Helicobacter pylori J99]
Length = 118
Score = 233 bits (595), Expect = 8e-64
Identities = 116/118 (98%), Positives = 117/118 (98%)
Query: 1 MKNRYIQQFEDAQLKDKTMPAFKAGDTLRLGITIKEGEKTRTQYFEGVCIAIRGNGVDKT 60
MKNRYIQQFEDAQLKDK+MP FKAGDTLRLGITIKEGEKTRTQYFEGVCIAIRGNGVDKT
Sbjct: 1 MKNRYIQQFEDAQLKDKSMPTFKAGDTLRLGITIKEGEKTRTQYFEGVCIAIRGNGVDKT 60
Query: 61 FCVRKIGANNIGVEKIFPFYSESLASVEVLRVGRVRRAKLYYLRDRRGKAARIKEVRH 118
FCVRKIGANNIGVEKIFPFYSESLASVEVLRVGRVRRAKLYYLRDRRGKAARIKEVRH
Sbjct: 61 FCVRKIGANNIGVEKIFPFYSESLASVEVLRVGRVRRAKLYYLRDRRGKAARIKEVRH 118
>ref|NP_224003.1| putative [Helicobacter pylori J99]
Length = 972
Score = 22.7 bits (47), Expect = 2.9
Identities = 15/41 (36%), Positives = 21/41 (50%), Gaps = 7/41 (17%)
Query: 50 IAIRGNGVDKTFCVRKIGANNIGVEKIFPFYSESLASVEVL 90
IA + N DK FC+ +IG I + E L SV+V+
Sbjct: 457 IAFKLNTSDKVFCLIRIG-------DITEWIREKLKSVKVV 490
>ref|NP_222915.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 394
Score = 22.7 bits (47), Expect = 2.9
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 42 TQYFEGV----CIAIRGNGVDKTFCVRKIGANNIGVEKIFPFYSES 83
T YF V IA+ N + +R++ A +IG+ FP E+
Sbjct: 156 THYFGAVREKDLIAMDRNSAKDLYELRQMHAKSIGIADAFPNLEET 201
>ref|NP_222996.1| DIAMINOPIMELATE DECARBOXYLASE [Helicobacter pylori J99]
Length = 405
Score = 22.3 bits (46), Expect = 3.8
Identities = 11/34 (32%), Positives = 15/34 (43%)
Query: 11 DAQLKDKTMPAFKAGDTLRLGITIKEGEKTRTQY 44
D LKD +P + GD L + G +QY
Sbjct: 333 DTFLKDANLPELEPGDKLAIEKVGAYGSSMASQY 366
>ref|NP_224134.1| putative [Helicobacter pylori J99]
Length = 479
Score = 21.9 bits (45), Expect = 5.0
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 26 DTLRLGITIKEGEKTRTQYFEGVCIAI 52
D ++ KE K ++ EGVC+A+
Sbjct: 420 DIIKESSEYKEWVKNHVRFKEGVCMAL 446
>ref|NP_224195.1| putative [Helicobacter pylori J99]
Length = 197
Score = 21.6 bits (44), Expect = 6.5
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 3 NRYIQQFEDAQLKDKTMPAFKAG 25
N ++ + + +Q + K P FK G
Sbjct: 174 NLFLDEIKQSQKEKKKFPTFKGG 196
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.324 0.141 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,425
Number of Sequences: 1491
Number of extensions: 4169
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 6
length of query: 118
length of database: 494,079
effective HSP length: 67
effective length of query: 51
effective length of database: 394,182
effective search space: 20103282
effective search space used: 20103282
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 43 (21.2 bits)