BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645763|ref|NP_207940.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(184 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223793.1| putative [Helicobacter pylori J99] 342 5e-96
ref|NP_222953.1| ATP-DEPENDENT RNA HELICASE DEAD [Helicobac... 31 0.018
ref|NP_223478.1| EXCINUCLEASE ABC SUBUNIT C [Helicobacter p... 27 0.44
ref|NP_223441.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobact... 25 0.97
ref|NP_223796.1| putative SIGNAL RECOGNITION PARTICLE PROTE... 24 2.8
ref|NP_223327.1| putative [Helicobacter pylori J99] 24 2.8
ref|NP_223219.1| putative [Helicobacter pylori J99] 24 2.8
ref|NP_223046.1| putative FLAGELLAR EXPORT APPARATUS [Helic... 24 2.8
ref|NP_223761.1| putative [Helicobacter pylori J99] 23 3.7
ref|NP_223657.1| putative [Helicobacter pylori J99] 23 3.7
ref|NP_223628.1| ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE ... 23 3.7
ref|NP_223536.1| CYSTEINYL-TRNA SYNTHETASE [Helicobacter py... 23 3.7
ref|NP_223203.1| cag island protein [Helicobacter pylori J99] 23 3.7
ref|NP_224152.1| DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N... 23 4.8
ref|NP_222992.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helic... 23 4.8
ref|NP_222797.1| methyl-accepting chemotaxis protein (MCP) ... 23 4.8
ref|NP_223351.1| putative HYDANTOIN UTILIZATION [Helicobact... 22 8.2
ref|NP_223147.1| putative Outer membrane protein [Helicobac... 22 8.2
>ref|NP_223793.1| putative [Helicobacter pylori J99]
Length = 181
Score = 342 bits (876), Expect = 5e-96
Identities = 170/181 (93%), Positives = 178/181 (97%)
Query: 4 MLLVGRIGKSVGLNGGLRLHLESDFPECLKKGVKVSVAPLNAFSCVSSFKEYIIHSYEHA 63
MLLVGRIGKSVGLNGGL+LHLESDFPECLKKGVKVSVAP+NAFSC SSFK+Y+IHSYEHA
Sbjct: 1 MLLVGRIGKSVGLNGGLKLHLESDFPECLKKGVKVSVAPINAFSCASSFKDYVIHSYEHA 60
Query: 64 KNLLFLETIQTPEKAKELTNLGLFMSEAESKKLCVLKEGEFFYCDLVGLSVVEENEILGK 123
KNLLFLETI+TPEKAKELTNLGLFMSEAESKKLCVLKEGEFFYCDL+GLSVVE NEILGK
Sbjct: 61 KNLLFLETIRTPEKAKELTNLGLFMSEAESKKLCVLKEGEFFYCDLIGLSVVEGNEILGK 120
Query: 124 VIEIQRISQTDYFLVETTLNLVEKGLAKIFLIPYRDFYIQEILLQDKKITTHNAKTLLEN 183
VIEIQRISQTDYF+VETT +LVEKGLAKIFLIPYRDFYIQEILLQDKKITTHNAKTLLEN
Sbjct: 121 VIEIQRISQTDYFMVETTRSLVEKGLAKIFLIPYRDFYIQEILLQDKKITTHNAKTLLEN 180
Query: 184 S 184
S
Sbjct: 181 S 181
>ref|NP_222953.1| ATP-DEPENDENT RNA HELICASE DEAD [Helicobacter pylori J99]
Length = 491
Score = 31.2 bits (69), Expect = 0.018
Identities = 19/70 (27%), Positives = 35/70 (49%), Gaps = 7/70 (10%)
Query: 32 LKKGVKVSVAPLNAFSCVSSFKEYIIHSYEHAKNLLFLETIQTPEKA-------KELTNL 84
L+ +K+ +AP N + + + Y+I+ +E A+ ++ L Q PEK+ KE L
Sbjct: 214 LENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPEKSIVFTRTKKEADEL 273
Query: 85 GLFMSEAESK 94
F++ K
Sbjct: 274 HQFLASKNYK 283
>ref|NP_223478.1| EXCINUCLEASE ABC SUBUNIT C [Helicobacter pylori J99]
Length = 594
Score = 26.6 bits (57), Expect = 0.44
Identities = 29/118 (24%), Positives = 52/118 (43%), Gaps = 14/118 (11%)
Query: 43 LNAFSCVSSFKEYIIHSYEHAKNLLFLETIQTPEKAKELTNLGLFMSEAESKK--LCVLK 100
LN F + K+ II+ Y+ L+ + + + + L L F+S SKK L + K
Sbjct: 289 LNGFDTDEAMKQAIINHYQSHLPLMPEQILLSACSNETLKELQEFISHQYSKKIALSIPK 348
Query: 101 EGEFFYCDLVGLSVVEENEILGKVIEIQRISQTDYFLVETTLNLVEKGLAKIFLIPYR 158
+G+ L+ +++ EI + ++ S D L E + L + +PYR
Sbjct: 349 KGD--KLALIEIAMKNAQEIFSQ----EKTSNEDRILEEA------RSLFNLECVPYR 394
>ref|NP_223441.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobacter pylori J99]
Length = 865
Score = 25.4 bits (54), Expect = 0.97
Identities = 22/72 (30%), Positives = 36/72 (49%), Gaps = 8/72 (11%)
Query: 69 LETIQTPE----KAKELTNLGLFMSEAESKKLCVLKEGEFFYCD---LVGLSVVEENEIL 121
LE + P K K+L +L ++ SE E +LK E LVG + +E++E L
Sbjct: 396 LEVVSIPTNLAIKRKDLNDL-IYKSEKEKFDAVILKIKELHDKGQPVLVGTASIEKSETL 454
Query: 122 GKVIEIQRISQT 133
+++ +RI T
Sbjct: 455 HALLKKERIPHT 466
>ref|NP_223796.1| putative SIGNAL RECOGNITION PARTICLE PROTEIN [Helicobacter pylori
J99]
Length = 448
Score = 23.9 bits (50), Expect = 2.8
Identities = 10/41 (24%), Positives = 24/41 (58%)
Query: 107 CDLVGLSVVEENEILGKVIEIQRISQTDYFLVETTLNLVEK 147
CDL L+ VE+ ++LG+ + ++ + + + E N +++
Sbjct: 130 CDLQRLAAVEQLKVLGEQVGVEVFHEENKSVKEIANNALKR 170
>ref|NP_223327.1| putative [Helicobacter pylori J99]
Length = 171
Score = 23.9 bits (50), Expect = 2.8
Identities = 16/52 (30%), Positives = 23/52 (43%), Gaps = 6/52 (11%)
Query: 56 IIHSYEHAKNLLFLETIQTPEKAKEL------TNLGLFMSEAESKKLCVLKE 101
+IHS KN FL+ I E EL N F+S+ E K ++ +
Sbjct: 17 LIHSLTTQKNRAFLKKISANEMLLELEKGAFKKNEAYFISDEEDKNYVLVPD 68
>ref|NP_223219.1| putative [Helicobacter pylori J99]
Length = 321
Score = 23.9 bits (50), Expect = 2.8
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 152 IFLIPYRDFYIQEILLQDKK 171
I++IP RD +++ I L +KK
Sbjct: 233 IYIIPKRDIWVEVIDLDEKK 252
>ref|NP_223046.1| putative FLAGELLAR EXPORT APPARATUS [Helicobacter pylori J99]
Length = 258
Score = 23.9 bits (50), Expect = 2.8
Identities = 27/109 (24%), Positives = 55/109 (49%), Gaps = 6/109 (5%)
Query: 76 EKAKELTNLGLFMSEAESKKLCVLKEGEFFYCDLVGLSVVEE-NEILGKVIEIQRISQTD 134
EKA+E + + + ++ + K+ KEGE + + SV EE N++L + + ++
Sbjct: 83 EKAQEESKVLIENAKNDGYKIG-FKEGEEKMRNELTHSVNEEKNQLLHAITALDEKMKSS 141
Query: 135 YFLVETTLNLVEKGLAKIFLIPYRDFYIQEILLQDKKITTHNAKTLLEN 183
E L +EK L+ I + ++ ++E+ +K+ A+ LL+N
Sbjct: 142 ----ENHLMALEKELSAIAIDIAKEVILKEVEDNSQKVALALAEELLKN 186
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 23.5 bits (49), Expect = 3.7
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 21 RLHLESDFPECLKKGVKVSVAPLNAFSCVSSFKEYIIHSYEHAKNLLFLETIQ--TPEKA 78
R HL SDF + L+ K S N + + + E K F + + T E+
Sbjct: 26 RSHLISDFSKNLELSAKNSKFTNNTLKIIEELNNGVKQASEEIKEKAFDFSNEKLTNEQI 85
Query: 79 KELTN 83
KEL N
Sbjct: 86 KELLN 90
>ref|NP_223657.1| putative [Helicobacter pylori J99]
Length = 325
Score = 23.5 bits (49), Expect = 3.7
Identities = 19/77 (24%), Positives = 34/77 (43%), Gaps = 2/77 (2%)
Query: 35 GVKVSVAPLNAFS--CVSSFKEYIIHSYEHAKNLLFLETIQTPEKAKELTNLGLFMSEAE 92
G+KV L + V + K++ H YE L T+ EK+ + TNL + +
Sbjct: 68 GLKVQETLLGTYKNKIVVACKDFTTHQYELVDFLSLKNTMIELEKSGKDTNLNDVLYAID 127
Query: 93 SKKLCVLKEGEFFYCDL 109
++ K + F+ D+
Sbjct: 128 NQHFIEPKVLKCFFWDM 144
>ref|NP_223628.1| ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE AMINOTRANSFERASE
[Helicobacter pylori J99]
Length = 439
Score = 23.5 bits (49), Expect = 3.7
Identities = 34/132 (25%), Positives = 47/132 (34%), Gaps = 10/132 (7%)
Query: 31 CLKKGVKVSVAPLNAFSCVSSFKEYIIHSYEHAKNLLFLETIQTPEKAKELTN--LGLFM 88
CL KG+ PL+A + YE K L + A N L +F
Sbjct: 271 CLSKGISGGYLPLSALLTHNEIYNQFYAPYEENKAFLHSHSYTGNALACACANATLDIFE 330
Query: 89 SEAESKKLCVLKEGEFFYCD-----LVGLSVVEENEILGKVIEIQRISQTDYFLVETTLN 143
E +K L E F L+ VV + LG V + QT L +L
Sbjct: 331 KENVIEKNKALSEFIFSALQNALKPLIERQVVSDLRHLGMVFAFEVFLQTKERL---SLA 387
Query: 144 LVEKGLAKIFLI 155
+ +K L K L+
Sbjct: 388 VFKKALKKGLLL 399
>ref|NP_223536.1| CYSTEINYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 465
Score = 23.5 bits (49), Expect = 3.7
Identities = 28/124 (22%), Positives = 54/124 (42%), Gaps = 17/124 (13%)
Query: 14 VGLNGGLRLHLESDFPECLKKGVKVSVAPLNAFSCVSSFKEYIIHSYEHAKNLLFLETIQ 73
+G GG+ + + + EC++ + VS A S +SS E + + ++ L E +
Sbjct: 330 LGTLGGINPNFKKEILECMQDDLNVSKALSVLESMLSSTNEKLDQNPKN--KALKGEILA 387
Query: 74 TPEKAKELTNLGLFMSEAESKKLCVLKEGEFFYCDLVGLSVVEENEILGKVIEIQRISQT 133
+ +EL +G K+ ++ +G+S E+ EI K+ E +R +
Sbjct: 388 NLKFIEELLGIG-------------FKDPSAYF--QLGVSESEKQEIENKIEERKRAKEQ 432
Query: 134 DYFL 137
FL
Sbjct: 433 KDFL 436
>ref|NP_223203.1| cag island protein [Helicobacter pylori J99]
Length = 376
Score = 23.5 bits (49), Expect = 3.7
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 43 LNAFSCVSSFKEYIIHSYEHAKNLLFLE--TIQTPEKAKELTNLGLFMSEAESKK 95
LN + KE + + Y K + T T +KA+ L +G+F + E K
Sbjct: 134 LNQETFTQEDKERLSYYYPQVKTSSIFKKTTATTKDKAQALLQMGVFSLDEEQNK 188
>ref|NP_224152.1| DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N) [Helicobacter pylori
J99]
Length = 522
Score = 23.1 bits (48), Expect = 4.8
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 84 LGLF-MSEAESKKLCVLKEGEFFYCDLVGLSVVEENEILGKVIEIQRISQTDYFLVET-- 140
LG F + E+ + + V F + G+ +E+E L VI + + +T YFL +T
Sbjct: 50 LGAFGLKESNASNIEVELIAPFLDTEEYGIFREDEHEPL--VISVIKKEKTRYFLNQTSL 107
Query: 141 ---TLNLVEKGLAK 151
TL + KGL K
Sbjct: 108 SKNTLKALLKGLIK 121
>ref|NP_222992.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helicobacter pylori J99]
Length = 550
Score = 23.1 bits (48), Expect = 4.8
Identities = 8/26 (30%), Positives = 17/26 (64%)
Query: 54 EYIIHSYEHAKNLLFLETIQTPEKAK 79
E +H+ +HA +++F++ I KA+
Sbjct: 245 ELFMHAKKHAPSIIFIDEIDALGKAR 270
>ref|NP_222797.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 673
Score = 23.1 bits (48), Expect = 4.8
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 54 EYIIHSYEHAKNLLFLETIQTPE--KAKELTNLG 85
E + ++ EH KNL F IQ P+ K L LG
Sbjct: 439 ESLNNALEHYKNLDFTHHIQNPKANMEKALNTLG 472
>ref|NP_223351.1| putative HYDANTOIN UTILIZATION [Helicobacter pylori J99]
Length = 712
Score = 22.3 bits (46), Expect = 8.2
Identities = 31/157 (19%), Positives = 65/157 (40%), Gaps = 15/157 (9%)
Query: 24 LESDFPECLKKGVKVSVAPLNAFSCVSSFKEYIIHSYEHAKNLLFLETIQTPEKAKELTN 83
L+ + E L+ + + F+C S +H+Y + + L F + + P A +
Sbjct: 439 LDLELKEYLRSNISAKGYSPSDFACFSYGGAGPVHTYGYTEGLGFKDVV-VPAWAAGFSA 497
Query: 84 LGLFMSEAESKKLCVLKEGEFFYCDLVGLSVVEENEILGKVIEIQRISQT--DYFLVETT 141
G C + E+ Y V +++ + + K IE +I Q D ++ T
Sbjct: 498 FG-----------CACADFEYRYDKSVDIAIPQYSSDESK-IEACKIIQDAWDELTLKVT 545
Query: 142 LNLVEKGLAKIFLIPYRDFYIQEILLQDKKITTHNAK 178
+ G ++ +I + +Q + + D +IT+ +K
Sbjct: 546 EEIKINGFSEKDVILRPGYRMQYMGIDDLEITSPVSK 582
>ref|NP_223147.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 371
Score = 22.3 bits (46), Expect = 8.2
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 39 SVAPLNAFSCVSSFKEYIIHSYEHAKNLLFLETIQTPEKAK 79
S+A N F+ I H+ EH L E IQT A+
Sbjct: 23 SIAEENGAYASVGFEYSISHAVEHNNPFLNQERIQTISNAQ 63
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.320 0.139 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 194,579
Number of Sequences: 1491
Number of extensions: 8785
Number of successful extensions: 44
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 36
Number of HSP's gapped (non-prelim): 18
length of query: 184
length of database: 494,079
effective HSP length: 72
effective length of query: 112
effective length of database: 386,727
effective search space: 43313424
effective search space used: 43313424
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)