BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645764|ref|NP_207941.1| hypothetical protein
[Helicobacter pylori 26695]
(115 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223794.1| putative [Helicobacter pylori J99] 219 2e-59
ref|NP_223761.1| putative [Helicobacter pylori J99] 25 0.42
ref|NP_223415.1| putative [Helicobacter pylori J99] 25 0.42
ref|NP_223951.1| 30S RIBOSOMAL PROTEIN S3 [Helicobacter pyl... 24 0.95
ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter ... 24 1.2
ref|NP_223424.1| MOLYBDOPTERIN-GUANINE DINUCLEOTIDE BIOSYNT... 23 1.6
ref|NP_224204.1| putative [Helicobacter pylori J99] 23 2.1
ref|NP_223804.1| putative [Helicobacter pylori J99] 23 2.1
ref|NP_223035.1| putative [Helicobacter pylori J99] 23 2.8
ref|NP_223962.1| putative [Helicobacter pylori J99] 22 3.6
ref|NP_223441.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobact... 22 3.6
ref|NP_222986.1| putative LIPID A BIOSYNTHESIS ACYLTRANSFER... 22 3.6
ref|NP_223488.1| putative [Helicobacter pylori J99] 22 4.7
ref|NP_224134.1| putative [Helicobacter pylori J99] 22 6.1
ref|NP_223160.1| PUTATIVE POTASSIUM CHANNEL PROTEIN [Helico... 22 6.1
ref|NP_222903.1| UDP-3-O-[3-hydroxymyristoyl [Helicobacter ... 22 6.1
ref|NP_224148.1| putative [Helicobacter pylori J99] 21 8.0
ref|NP_223442.1| putative [Helicobacter pylori J99] 21 8.0
>ref|NP_223794.1| putative [Helicobacter pylori J99]
Length = 117
Score = 219 bits (558), Expect = 2e-59
Identities = 108/117 (92%), Positives = 113/117 (96%), Gaps = 2/117 (1%)
Query: 1 MHESDPLNTPFSQADCKDYSHCVATFLEKYLKKVVSFPQALSVEHTLLEDKVKQITIYTH 60
M +SDPLNTPFSQA+CKDYS+CVATFLEKYLKKVVSFPQALSVE+TLLEDKVKQITIYTH
Sbjct: 1 MRKSDPLNTPFSQAECKDYSYCVATFLEKYLKKVVSFPQALSVEYTLLEDKVKQITIYTH 60
Query: 61 PSDMGHVIGKEGKMVSAIKAFISGVKAKDGFSYKIVVFAS--KNGDKNPHVLGDQTP 115
PSDMGHVIGKEGKMVSAIKAF+SGVKAKDGFSYKIVVFAS KNGDKNPH LGDQTP
Sbjct: 61 PSDMGHVIGKEGKMVSAIKAFVSGVKAKDGFSYKIVVFASNDKNGDKNPHALGDQTP 117
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 25.4 bits (54), Expect = 0.42
Identities = 25/112 (22%), Positives = 46/112 (40%), Gaps = 18/112 (16%)
Query: 5 DPLNTPFSQADCKDYSHCVATFLEK------YLKKVVSFPQALSVEHTLLEDKVKQITIY 58
DP + F D D++H + + LK+++ + + E K K T
Sbjct: 733 DPKSKEFKDIDIYDFTHYLLMVNREPNENNPVLKRLIQAVKDMQKEKKKGIKKPKLET-- 790
Query: 59 THPSDMGHV--------IGKEGKMVSAIKAFISGVKAKDGFSYKIVVFASKN 102
PS+ GH +G K++ K F++G K+G +V+ +K+
Sbjct: 791 --PSEWGHHYSEFKGDGLGAINKLLKTKKGFVAGAFYKEGLGDIDLVWGNKD 840
>ref|NP_223415.1| putative [Helicobacter pylori J99]
Length = 529
Score = 25.4 bits (54), Expect = 0.42
Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 64 MGHVIGKEGKMVSAIKAFISGV 85
+G VIGK+GK + A K ISGV
Sbjct: 228 VGRVIGKDGKNIEAFKK-ISGV 248
>ref|NP_223951.1| 30S RIBOSOMAL PROTEIN S3 [Helicobacter pylori J99]
Length = 234
Score = 24.3 bits (51), Expect = 0.95
Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 27 LEKYLKKVVSFPQALSVEHTLLEDKVKQITIYTHPSDMGHVIGKEGKMVSAIK 79
+ K+LKK + + V ++E K++ + + G +IGK+G + +K
Sbjct: 39 IRKFLKKELYYA---GVSEIVIERAAKKLRVTVVAARPGLIIGKKGVDIEKVK 88
>ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 969
Score = 23.9 bits (50), Expect = 1.2
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 26 FLEKYLKKVVSFPQALSVEHTLLEDKVKQITIYTHPS--DMGHVIGKEGKMVSAI 78
FLE LK+ ++ +T LE+K++ + + TH + + H+ E +V I
Sbjct: 271 FLE--LKEANKKQNEATINYTTLENKIQSVKVKTHDNLGALTHISALEDYIVEKI 323
Score = 23.5 bits (49), Expect = 1.6
Identities = 15/64 (23%), Positives = 29/64 (44%), Gaps = 5/64 (7%)
Query: 48 LEDKVKQITIYTHPSDMGH-----VIGKEGKMVSAIKAFISGVKAKDGFSYKIVVFASKN 102
+ K+ +T + MG+ + ++ V ++ FIS + K S+K V +N
Sbjct: 704 VSSKIVSVTTHKKVETMGNNAKTEIFERKSACVWSLHEFISALSNKVKLSFKSVAKVLEN 763
Query: 103 GDKN 106
D+N
Sbjct: 764 IDEN 767
>ref|NP_223424.1| MOLYBDOPTERIN-GUANINE DINUCLEOTIDE BIOSYNTHESIS PROTEIN A
[Helicobacter pylori J99]
Length = 209
Score = 23.5 bits (49), Expect = 1.6
Identities = 15/55 (27%), Positives = 27/55 (48%), Gaps = 3/55 (5%)
Query: 27 LEKYLKKVVSFPQALSVEHTLLEDKVKQITIYTHPS---DMGHVIGKEGKMVSAI 78
+ K L + S+P L ++T L KQ+ I S + +++ KEG + S +
Sbjct: 29 INKALMPLKSYPSLLEYQYTRLLKLFKQVIISAKKSYELNAPYLLEKEGGLFSPL 83
>ref|NP_224204.1| putative [Helicobacter pylori J99]
Length = 140
Score = 23.1 bits (48), Expect = 2.1
Identities = 13/41 (31%), Positives = 22/41 (52%), Gaps = 1/41 (2%)
Query: 70 KEGKMVSAIKAFISGVKAKDGFSYKIVVFASKNGDKNPHVL 110
K+ K V +K + +++ + S K+V A KN KN +L
Sbjct: 79 KDFKSVGVLKTLLKDIQSLEKTSNKLVCVAPKNA-KNFEIL 118
>ref|NP_223804.1| putative [Helicobacter pylori J99]
Length = 141
Score = 23.1 bits (48), Expect = 2.1
Identities = 15/46 (32%), Positives = 23/46 (49%), Gaps = 9/46 (19%)
Query: 40 ALSVEHTLLEDKVKQITI--------YTHPSDMGHVIGKEGKMVSA 77
AL + H+L ED++ + I Y H D G KEG+++ A
Sbjct: 83 ALKLGHSL-EDEIALLFIHGVLHLLGYDHEKDKGEQRQKEGELIKA 127
>ref|NP_223035.1| putative [Helicobacter pylori J99]
Length = 266
Score = 22.7 bits (47), Expect = 2.8
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 13 QADCKDYSHCVATFLEKYLKKVVSFPQALS 42
QAD K S A +KY K + PQ L+
Sbjct: 154 QADLKSGSMSSARLAQKYQKPLFVLPQRLN 183
>ref|NP_223962.1| putative [Helicobacter pylori J99]
Length = 64
Score = 22.3 bits (46), Expect = 3.6
Identities = 12/36 (33%), Positives = 18/36 (49%)
Query: 44 EHTLLEDKVKQITIYTHPSDMGHVIGKEGKMVSAIK 79
+H L +V +TI + PSD V E ++ IK
Sbjct: 16 KHAKLTGRVHHLTIPSSPSDRKSVKNFEKELTEFIK 51
>ref|NP_223441.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobacter pylori J99]
Length = 865
Score = 22.3 bits (46), Expect = 3.6
Identities = 11/27 (40%), Positives = 16/27 (58%)
Query: 26 FLEKYLKKVVSFPQALSVEHTLLEDKV 52
FLE Y +VVS P L+++ L D +
Sbjct: 390 FLEIYNLEVVSIPTNLAIKRKDLNDLI 416
>ref|NP_222986.1| putative LIPID A BIOSYNTHESIS ACYLTRANSFERASE [Helicobacter pylori
J99]
Length = 328
Score = 22.3 bits (46), Expect = 3.6
Identities = 12/44 (27%), Positives = 19/44 (42%)
Query: 18 DYSHCVATFLEKYLKKVVSFPQALSVEHTLLEDKVKQITIYTHP 61
DYSH AT+ ++ Q +E T + + + I HP
Sbjct: 265 DYSHYTATYYPSIRSQITDNAQNDILECTQAQASLCEEVIRNHP 308
>ref|NP_223488.1| putative [Helicobacter pylori J99]
Length = 196
Score = 21.9 bits (45), Expect = 4.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 38 PQALSVEHTLLEDKVKQITI 57
P+AL +E L DK+K+ I
Sbjct: 135 PRALQIERLLERDKLKEAEI 154
>ref|NP_224134.1| putative [Helicobacter pylori J99]
Length = 479
Score = 21.6 bits (44), Expect = 6.1
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 50 DKVKQITIYTHPSDMGHVIGKEGKMVS 76
DK K+IT P D K GK+++
Sbjct: 263 DKDKEITTDITPCDYSTAENKSGKIIT 289
>ref|NP_223160.1| PUTATIVE POTASSIUM CHANNEL PROTEIN [Helicobacter pylori J99]
Length = 378
Score = 21.6 bits (44), Expect = 6.1
Identities = 9/21 (42%), Positives = 11/21 (51%)
Query: 70 KEGKMVSAIKAFISGVKAKDG 90
KE KAF+ G+ KDG
Sbjct: 310 KEAHFREIAKAFVIGITQKDG 330
>ref|NP_222903.1| UDP-3-O-[3-hydroxymyristoyl [Helicobacter pylori J99]
Length = 336
Score = 21.6 bits (44), Expect = 6.1
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 32 KKVVSFPQALSVEHTLLEDKV 52
K + +P+ + ++T+LED V
Sbjct: 143 KNCILYPRVILYQNTILEDNV 163
>ref|NP_224148.1| putative [Helicobacter pylori J99]
Length = 282
Score = 21.2 bits (43), Expect = 8.0
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 84 GVKAKDGFSYKIVVFASKNGDKN 106
G+ AKD F Y + F KN
Sbjct: 136 GLNAKDDFVYALEHFNDSQASKN 158
>ref|NP_223442.1| putative [Helicobacter pylori J99]
Length = 410
Score = 21.2 bits (43), Expect = 8.0
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 64 MGHVIGKEGKMVSAIKAFIS 83
+G++IG G ++ + AFIS
Sbjct: 326 LGNIIGLGGVILGVVLAFIS 345
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.317 0.134 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 123,436
Number of Sequences: 1491
Number of extensions: 4857
Number of successful extensions: 25
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 19
length of query: 115
length of database: 494,079
effective HSP length: 67
effective length of query: 48
effective length of database: 394,182
effective search space: 18920736
effective search space used: 18920736
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 43 (21.2 bits)