BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645765|ref|NP_207942.1| ribosomal protein S16
(rpS16) [Helicobacter pylori 26695]
(76 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223795.1| 30S RIBOSOMAL PROTEIN S16 [Helicobacter py... 155 1e-40
ref|NP_223308.1| LYTIC MUREIN TRANSGLYCOSYLASE [Helicobacte... 24 0.50
ref|NP_223801.1| putative Outer membrane protein [Helicobac... 23 0.85
ref|NP_223238.1| putative [Helicobacter pylori J99] 23 0.85
ref|NP_224021.1| putative [Helicobacter pylori J99] 21 5.5
ref|NP_223792.1| TRNA (GUANINE-N1)-METHYLTRANSFERASE [Helic... 21 5.5
ref|NP_223538.1| putative lipopolysaccharide biosynthesis p... 21 5.5
ref|NP_223455.1| putative MOLYBDOPTERIN CONVERTING FACTOR, ... 20 7.2
ref|NP_223180.1| putative [Helicobacter pylori J99] 20 7.2
ref|NP_224022.1| putative [Helicobacter pylori J99] 20 9.4
ref|NP_223555.1| Hydrogenase expression/formation protein [... 20 9.4
ref|NP_223502.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 20 9.4
ref|NP_223063.1| putative [Helicobacter pylori J99] 20 9.4
ref|NP_222935.1| Outer membrane protein/porin [Helicobacter... 20 9.4
>ref|NP_223795.1| 30S RIBOSOMAL PROTEIN S16 [Helicobacter pylori J99]
Length = 76
Score = 155 bits (392), Expect = 1e-40
Identities = 74/76 (97%), Positives = 76/76 (99%)
Query: 1 MTVIRLTRIGRKKKPFYRVVVTDSRKRRDGGWIESIGYYNPLSEPKDIKIDKERLNYWKG 60
MTVIRLTRIGRKKKPFYRVVVTDSRKRRDGGWIESIGYYNPLSEPKD++IDKERLNYWKG
Sbjct: 1 MTVIRLTRIGRKKKPFYRVVVTDSRKRRDGGWIESIGYYNPLSEPKDVRIDKERLNYWKG 60
Query: 61 VGAKMSERVEKLSQKA 76
VGAKMSERVEKLSQKA
Sbjct: 61 VGAKMSERVEKLSQKA 76
>ref|NP_223308.1| LYTIC MUREIN TRANSGLYCOSYLASE [Helicobacter pylori J99]
Length = 560
Score = 24.3 bits (51), Expect = 0.50
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 46 KDIKIDKERLNYWKGVGAKMSERVEKLSQ 74
KD K+R +W+ + +K + +E LSQ
Sbjct: 267 KDDDFSKDRAIFWQYLASKKKKTLEHLSQ 295
>ref|NP_223801.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 1237
Score = 23.5 bits (49), Expect = 0.85
Identities = 10/28 (35%), Positives = 13/28 (45%)
Query: 11 RKKKPFYRVVVTDSRKRRDGGWIESIGY 38
+K K F + S D GW S+GY
Sbjct: 3 KKAKKFIPFFLIGSLLAEDNGWYMSVGY 30
>ref|NP_223238.1| putative [Helicobacter pylori J99]
Length = 110
Score = 23.5 bits (49), Expect = 0.85
Identities = 10/29 (34%), Positives = 18/29 (61%)
Query: 47 DIKIDKERLNYWKGVGAKMSERVEKLSQK 75
++K K+R + +KG K R+++L QK
Sbjct: 77 ELKALKQRNSEYKGESDKYKNRIKQLEQK 105
>ref|NP_224021.1| putative [Helicobacter pylori J99]
Length = 410
Score = 20.8 bits (42), Expect = 5.5
Identities = 8/37 (21%), Positives = 20/37 (53%)
Query: 38 YYNPLSEPKDIKIDKERLNYWKGVGAKMSERVEKLSQ 74
++NP+S+P+ + + + + KM + E+ +Q
Sbjct: 283 HFNPISDPRLSVFNVKEFKRYNDIKKKMVKESEENAQ 319
>ref|NP_223792.1| TRNA (GUANINE-N1)-METHYLTRANSFERASE [Helicobacter pylori J99]
Length = 229
Score = 20.8 bits (42), Expect = 5.5
Identities = 12/46 (26%), Positives = 23/46 (49%)
Query: 29 DGGWIESIGYYNPLSEPKDIKIDKERLNYWKGVGAKMSERVEKLSQ 74
+ ++E+ + N + + K+I L Y KG AK+ + LS+
Sbjct: 168 ENNYLETPNFANAVFKSKEINKIPAPLEYSKGNHAKIKQLKLDLSK 213
>ref|NP_223538.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 373
Score = 20.8 bits (42), Expect = 5.5
Identities = 7/15 (46%), Positives = 12/15 (79%)
Query: 54 RLNYWKGVGAKMSER 68
RLN+ KG+G K++ +
Sbjct: 182 RLNWSKGMGVKLNHK 196
>ref|NP_223455.1| putative MOLYBDOPTERIN CONVERTING FACTOR, SUBUNIT 1 [Helicobacter
pylori J99]
Length = 73
Score = 20.4 bits (41), Expect = 7.2
Identities = 11/24 (45%), Positives = 13/24 (53%)
Query: 40 NPLSEPKDIKIDKERLNYWKGVGA 63
N L E + I +KE L W GV A
Sbjct: 20 NGLKELRAILQEKEGLKEWLGVCA 43
>ref|NP_223180.1| putative [Helicobacter pylori J99]
Length = 706
Score = 20.4 bits (41), Expect = 7.2
Identities = 9/24 (37%), Positives = 13/24 (53%)
Query: 34 ESIGYYNPLSEPKDIKIDKERLNY 57
E++ Y P E K+ K KE+ Y
Sbjct: 551 ETLEEYKPKKEKKEKKEKKEKEEY 574
>ref|NP_224022.1| putative [Helicobacter pylori J99]
Length = 309
Score = 20.0 bits (40), Expect = 9.4
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 40 NPLSEPKDIKIDKERLNYWKGVGAKMSERVEKL 72
N + KD KE +N ++ + +ER +KL
Sbjct: 192 NAKASVKDFMSSKEFVNKYRYTPKQNTERAKKL 224
>ref|NP_223555.1| Hydrogenase expression/formation protein [Helicobacter pylori
J99]
Length = 242
Score = 20.0 bits (40), Expect = 9.4
Identities = 13/32 (40%), Positives = 17/32 (52%)
Query: 40 NPLSEPKDIKIDKERLNYWKGVGAKMSERVEK 71
NP KDIKI ++ L+ A+M ER K
Sbjct: 12 NPNLSKKDIKIVEKILSKNDIKAAEMKERYLK 43
>ref|NP_223502.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 875
Score = 20.0 bits (40), Expect = 9.4
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 35 SIGYYNPLSEPKDIKIDKERLNYWKGVGAKMSER 68
+I YN + + D++ +Y+K + KM ER
Sbjct: 479 AIADYNGMFQISFDTSDQKFQSYYKDLSQKMKER 512
>ref|NP_223063.1| putative [Helicobacter pylori J99]
Length = 207
Score = 20.0 bits (40), Expect = 9.4
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 45 PKDIKIDKERL 55
PKD+K KERL
Sbjct: 97 PKDLKAIKERL 107
>ref|NP_222935.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 483
Score = 20.0 bits (40), Expect = 9.4
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 48 IKIDKERLNYWKGVGAKMSER 68
+KI NY+ +GAK++ R
Sbjct: 450 VKIPTINTNYYSFMGAKLAYR 470
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.317 0.137 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,323
Number of Sequences: 1491
Number of extensions: 2911
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of query: 76
length of database: 494,079
effective HSP length: 52
effective length of query: 24
effective length of database: 416,547
effective search space: 9997128
effective search space used: 9997128
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.2 bits)
S2: 40 (20.0 bits)