BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645773|ref|NP_207950.1| cell filamentation protein
(fic) [Helicobacter pylori 26695]
(177 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223803.1| putative cAMP-induced cell filamentation p... 330 1e-92
ref|NP_223369.1| putative [Helicobacter pylori J99] 30 0.028
ref|NP_223315.1| PHOSPHOSERINE PHOSPHATASE [Helicobacter py... 24 2.0
ref|NP_223308.1| LYTIC MUREIN TRANSGLYCOSYLASE [Helicobacte... 24 2.7
ref|NP_222786.1| UREASE ACCESSORY PROTEIN [Helicobacter pyl... 23 3.5
ref|NP_223925.1| putative TRANSCRIPTIONAL REGULATOR [Helico... 23 4.5
ref|NP_222851.1| A/G-SPECIFIC ADENINE GLYCOSYLASE [Helicoba... 23 4.5
ref|NP_223303.1| putative 3-HYDROXYACID DEHYDROGENASE [Heli... 23 5.9
ref|NP_223965.1| putative [Helicobacter pylori J99] 22 7.7
ref|NP_223612.1| GLYCYL-TRNA SYNTHETASE ALPHA CHAIN [Helico... 22 7.7
>ref|NP_223803.1| putative cAMP-induced cell filamentation protein [Helicobacter
pylori J99]
Length = 175
Score = 330 bits (846), Expect = 1e-92
Identities = 165/177 (93%), Positives = 170/177 (95%), Gaps = 2/177 (1%)
Query: 1 MHLDRQSLEKAKHLIQSGLIDTIEVGTIKGLQEIHRFLFEGLYEFAGKIRDKNIAKGNFR 60
MHLDRQSLEKAKHLIQSGLIDTIEVG IKGLQEIHRFLFEGLYEFAGKIRDKNI+ NFR
Sbjct: 1 MHLDRQSLEKAKHLIQSGLIDTIEVGAIKGLQEIHRFLFEGLYEFAGKIRDKNIS--NFR 58
Query: 61 FANCLYLDLILPRIESMPQNNFNQIVEKYVEMNIAHPFLEGNGRATRIWLDLLLKKELKK 120
FANCLYLDLILPR+ESMPQNNFNQI+EKYVEMNIAHPFLEGNGRATRIWLDLLLKKELKK
Sbjct: 59 FANCLYLDLILPRMESMPQNNFNQIIEKYVEMNIAHPFLEGNGRATRIWLDLLLKKELKK 118
Query: 121 IVLWDRIDKAAYLSAMERSPVNDLEIKTLLKKHLSSNTNDPLTLIKGITQSYYYEGL 177
I LWDRIDKAAYLSA++RSPVNDLEIKTLLKKHLSSN ND LT IKGITQSYYYEGL
Sbjct: 119 IALWDRIDKAAYLSAIKRSPVNDLEIKTLLKKHLSSNINDSLTFIKGITQSYYYEGL 175
>ref|NP_223369.1| putative [Helicobacter pylori J99]
Length = 234
Score = 30.4 bits (67), Expect = 0.028
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 79 QNNFNQIVEKYVEMNIAHPFLEGNGRATRIWLDL-LLKKELKKIVLWDRIDKAAYLSAME 137
+ I+E+++ HPF +GNGR RI + L++ L V+ + K AY+ A++
Sbjct: 143 EEKLKAILEQHILFERIHPFSDGNGRVGRILIFYSALEQNLIPFVI-TKEQKEAYIKALD 201
>ref|NP_223315.1| PHOSPHOSERINE PHOSPHATASE [Helicobacter pylori J99]
Length = 207
Score = 24.3 bits (51), Expect = 2.0
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 38 LFEGLYEFAGKIRDKNIA----KGNFRFANCLYLDLI 70
LFEG +E +++KN G F A Y DL+
Sbjct: 74 LFEGAFELISALKEKNYKVVCFSGGFDLATNHYRDLL 110
>ref|NP_223308.1| LYTIC MUREIN TRANSGLYCOSYLASE [Helicobacter pylori J99]
Length = 560
Score = 23.9 bits (50), Expect = 2.7
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 21 DTIEVGTIKGLQEIHRFLFEGLYEFAGKIRDKNIAKGNFR 60
D I + T K LQE + + LYE ++ KN++ F+
Sbjct: 125 DKIPIQTFKPLQEKIKEAYPILYEELEILQSKNVSASLFK 164
>ref|NP_222786.1| UREASE ACCESSORY PROTEIN [Helicobacter pylori J99]
Length = 256
Score = 23.5 bits (49), Expect = 3.5
Identities = 8/18 (44%), Positives = 15/18 (82%)
Query: 79 QNNFNQIVEKYVEMNIAH 96
Q+ FNQ++EK +E++ +H
Sbjct: 214 QSPFNQLIEKTLELDESH 231
>ref|NP_223925.1| putative TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99]
Length = 217
Score = 23.1 bits (48), Expect = 4.5
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 94 IAHPFLEGNGRAT 106
I+HPF++G GR T
Sbjct: 19 ISHPFVQGIGRGT 31
>ref|NP_222851.1| A/G-SPECIFIC ADENINE GLYCOSYLASE [Helicobacter pylori J99]
Length = 328
Score = 23.1 bits (48), Expect = 4.5
Identities = 12/45 (26%), Positives = 25/45 (54%), Gaps = 1/45 (2%)
Query: 2 HLDRQSLEKAKHLIQ-SGLIDTIEVGTIKGLQEIHRFLFEGLYEF 45
HL+R +L+K + +IQ + + L++I + L+ G++ F
Sbjct: 210 HLERHTLKKKQEIIQEERYLGVVIQNNQIALEKIEQKLYLGMHHF 254
>ref|NP_223303.1| putative 3-HYDROXYACID DEHYDROGENASE [Helicobacter pylori J99]
Length = 285
Score = 22.7 bits (47), Expect = 5.9
Identities = 7/40 (17%), Positives = 22/40 (54%)
Query: 124 WDRIDKAAYLSAMERSPVNDLEIKTLLKKHLSSNTNDPLT 163
W+++ K ++ +P+ L ++ + +KH ++ P++
Sbjct: 79 WEQMSKKIVVNMSTIAPLESLSLEKIAQKHQATYLEAPVS 118
>ref|NP_223965.1| putative [Helicobacter pylori J99]
Length = 412
Score = 22.3 bits (46), Expect = 7.7
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 143 DLEIKTLLKKHLSSN 157
DLEI+T + K+LS N
Sbjct: 32 DLEIQTFVAKYLSKN 46
>ref|NP_223612.1| GLYCYL-TRNA SYNTHETASE ALPHA CHAIN [Helicobacter pylori J99]
Length = 298
Score = 22.3 bits (46), Expect = 7.7
Identities = 11/31 (35%), Positives = 15/31 (47%)
Query: 81 NFNQIVEKYVEMNIAHPFLEGNGRATRIWLD 111
N N+ ++VE N P L G +WLD
Sbjct: 103 NLNEHDIRFVEDNWESPTLGAWGLGWEVWLD 133
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.321 0.140 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 191,050
Number of Sequences: 1491
Number of extensions: 8434
Number of successful extensions: 38
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 10
length of query: 177
length of database: 494,079
effective HSP length: 72
effective length of query: 105
effective length of database: 386,727
effective search space: 40606335
effective search space used: 40606335
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)