BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645774|ref|NP_207951.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(140 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223804.1| putative [Helicobacter pylori J99] 256 2e-70
ref|NP_222964.1| EXODEOXYRIBONUCLEASE LARGE SUBUNIT [Helico... 25 1.1
ref|NP_223555.1| Hydrogenase expression/formation protein [... 23 2.4
ref|NP_223465.1| putative [Helicobacter pylori J99] 23 2.4
ref|NP_224064.1| putative Outer membrane protein [Helicobac... 23 3.1
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 23 4.0
ref|NP_223339.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 ALP... 22 5.3
ref|NP_222915.1| putative lipopolysaccharide biosynthesis p... 22 5.3
ref|NP_223276.1| DNA LIGASE [Helicobacter pylori J99] 22 6.9
ref|NP_222916.1| putative Outer membrane protein [Helicobac... 22 9.0
>ref|NP_223804.1| putative [Helicobacter pylori J99]
Length = 141
Score = 256 bits (653), Expect = 2e-70
Identities = 130/140 (92%), Positives = 136/140 (96%)
Query: 1 MLEIDNQTPLESDFLLLEKIANVLAPTQIIELVLVSDETIREINKDLRGCDYATDVLSFP 60
MLEIDNQTPLESDFLLLEKIA+VLA TQIIELVLVSDET+REIN+DLR CDYATDVLSFP
Sbjct: 1 MLEIDNQTPLESDFLLLEKIADVLASTQIIELVLVSDETMREINRDLRDCDYATDVLSFP 60
Query: 61 LEAIPHTPLGSVVINAPLAQTNALKLGHSLENEIALLFIHGVLHLLGYDHEKDKGEQRQK 120
LEAIPHTPLGSVVINAPLAQ NALKLGHSLE+EIALLFIHGVLHLLGYDHEKDKGEQRQK
Sbjct: 61 LEAIPHTPLGSVVINAPLAQENALKLGHSLEDEIALLFIHGVLHLLGYDHEKDKGEQRQK 120
Query: 121 ESELIKAFNLPLSLIERTQD 140
E ELIKAF+LPLSLIERTQ+
Sbjct: 121 EGELIKAFDLPLSLIERTQE 140
>ref|NP_222964.1| EXODEOXYRIBONUCLEASE LARGE SUBUNIT [Helicobacter pylori J99]
Length = 420
Score = 24.6 bits (52), Expect = 1.1
Identities = 14/37 (37%), Positives = 26/37 (69%), Gaps = 3/37 (8%)
Query: 11 ESDFLLLEKIANVLA--PTQIIELVL-VSDETIREIN 44
ESDFLL + +A++ A P+ +E++L SDE ++ ++
Sbjct: 238 ESDFLLSDSVADLRASTPSNAMEILLPSSDEWLQRLD 274
>ref|NP_223555.1| Hydrogenase expression/formation protein [Helicobacter pylori J99]
Length = 242
Score = 23.5 bits (49), Expect = 2.4
Identities = 7/17 (41%), Positives = 14/17 (82%)
Query: 11 ESDFLLLEKIANVLAPT 27
+SDFL++E + N++ P+
Sbjct: 128 KSDFLIIENVGNLVCPS 144
>ref|NP_223465.1| putative [Helicobacter pylori J99]
Length = 108
Score = 23.5 bits (49), Expect = 2.4
Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 20 IANVLAPTQIIELVLVSDETIREINKDL 47
+++ L+P ++ +LVL DE + E NK L
Sbjct: 20 LSDCLSPVEVCDLVLSDDEKL-ETNKPL 46
>ref|NP_224064.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 744
Score = 23.1 bits (48), Expect = 3.1
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 67 TPLGSVVINAPLAQTNALKLGHSLENEIALL----FIHGVLHLLGYDHEKDKGEQRQKES 122
T G++ I +P L G L N++A++ IH H LGY H + QR +
Sbjct: 381 TNFGALGILSPFLDPEIL-FGKEL-NKVAIMQLRDIIHEYGHTLGYTHNGNMTYQRVRMC 438
Query: 123 E 123
E
Sbjct: 439 E 439
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 22.7 bits (47), Expect = 4.0
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 78 LAQTNALKLGHSLE-NEIALLFIHGVLHLLGYDHEKDKGE 116
L+Q LK +L+ N + F +L++LG + + DKG+
Sbjct: 211 LSQEVLLKQKRTLDANTLNKDFYEELLYILGLEEQNDKGK 250
>ref|NP_223339.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 ALPHA CHAIN [Helicobacter
pylori J99]
Length = 788
Score = 22.3 bits (46), Expect = 5.3
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 100 HGVLHLLGYDHEKDKGEQRQKESELIKAF 128
H V GY H K+ E +++ ++K F
Sbjct: 88 HKVSGFTGYRHLKEYFENAEEKGRILKGF 116
>ref|NP_222915.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 394
Score = 22.3 bits (46), Expect = 5.3
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 109 DHEKDKGEQRQKESELIKAFNLPLSLIER 137
DH + + + KE++ I AFN LS ++
Sbjct: 324 DHLFESLQNKDKETQEIHAFNKALSFSDK 352
>ref|NP_223276.1| DNA LIGASE [Helicobacter pylori J99]
Length = 656
Score = 21.9 bits (45), Expect = 6.9
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 69 LGSVVINAPLAQTNALKLGHSLENEIALLFIHGV 102
LG+ + ++ A+T+ L G + +++AL HGV
Sbjct: 607 LGAKIASSVSAKTDFLIAGENAGSKLALAQKHGV 640
>ref|NP_222916.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 438
Score = 21.6 bits (44), Expect = 9.0
Identities = 13/45 (28%), Positives = 18/45 (39%)
Query: 68 PLGSVVINAPLAQTNALKLGHSLENEIALLFIHGVLHLLGYDHEK 112
P GS V Q ++ L +EN + G + L YD K
Sbjct: 38 PTGSYVTTTGALQVDSSLLPKGIENHKLGFGVGGEIGALAYDSTK 82
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.317 0.138 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 145,724
Number of Sequences: 1491
Number of extensions: 6106
Number of successful extensions: 21
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 10
length of query: 140
length of database: 494,079
effective HSP length: 69
effective length of query: 71
effective length of database: 391,200
effective search space: 27775200
effective search space used: 27775200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 44 (21.6 bits)