BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645777|ref|NP_207954.1| hypothetical protein
[Helicobacter pylori 26695]
(63 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223807.1| putative component of cation transport for... 123 8e-31
ref|NP_222811.1| THREONINE SYNTHASE [Helicobacter pylori J99] 25 0.40
ref|NP_223163.1| PHOSPHO-N-ACETYLMURAMOYL-PENTAPEPTIDE-TRAN... 23 1.2
ref|NP_223137.1| putative [Helicobacter pylori J99] 23 1.5
ref|NP_223445.1| putative HEAVY-METAL CATION-TRANSPORTING P... 22 2.0
ref|NP_223828.1| putative [Helicobacter pylori J99] 22 3.4
ref|NP_223997.1| DNA transfer protein [Helicobacter pylori ... 21 4.4
ref|NP_223102.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobact... 21 4.4
ref|NP_223967.1| CATION EFFLUX SYSTEM PROTEIN [Helicobacter... 21 5.8
ref|NP_223273.1| putative [Helicobacter pylori J99] 21 5.8
ref|NP_223243.1| putative [Helicobacter pylori J99] 21 5.8
ref|NP_223879.1| putative [Helicobacter pylori J99] 20 7.6
ref|NP_223574.1| putative vacuolating cytotoxin (VacA) para... 20 7.6
ref|NP_223331.1| putative [Helicobacter pylori J99] 20 7.6
ref|NP_223157.1| putative Outer membrane protein [Helicobac... 20 9.9
ref|NP_222850.1| L-lactate permease [Helicobacter pylori J99] 20 9.9
>ref|NP_223807.1| putative component of cation transport for cbb3-type oxidase
[Helicobacter pylori J99]
Length = 63
Score = 123 bits (308), Expect = 8e-31
Identities = 63/63 (100%), Positives = 63/63 (100%)
Query: 1 MNTEILTIMLVVSVLMGLVGLIAFLWGVKSGQFDDEKRMLESVLYDSASDLNEAILQEKR 60
MNTEILTIMLVVSVLMGLVGLIAFLWGVKSGQFDDEKRMLESVLYDSASDLNEAILQEKR
Sbjct: 1 MNTEILTIMLVVSVLMGLVGLIAFLWGVKSGQFDDEKRMLESVLYDSASDLNEAILQEKR 60
Query: 61 QKN 63
QKN
Sbjct: 61 QKN 63
>ref|NP_222811.1| THREONINE SYNTHASE [Helicobacter pylori J99]
Length = 486
Score = 24.6 bits (52), Expect = 0.40
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 30 SGQFDDEKRMLESVLYDSASDLNEAI 55
SG FDD + L+++L D D NEA+
Sbjct: 188 SGDFDDAQNALKNLLKD--DDFNEAL 211
>ref|NP_223163.1| PHOSPHO-N-ACETYLMURAMOYL-PENTAPEPTIDE-TRANSFERASE [Helicobacter
pylori J99]
Length = 353
Score = 23.1 bits (48), Expect = 1.2
Identities = 10/22 (45%), Positives = 15/22 (67%)
Query: 5 ILTIMLVVSVLMGLVGLIAFLW 26
+ + L+VSVL+ L GL FL+
Sbjct: 132 LFILSLIVSVLLSLKGLDTFLY 153
>ref|NP_223137.1| putative [Helicobacter pylori J99]
Length = 115
Score = 22.7 bits (47), Expect = 1.5
Identities = 12/49 (24%), Positives = 27/49 (54%)
Query: 14 VLMGLVGLIAFLWGVKSGQFDDEKRMLESVLYDSASDLNEAILQEKRQK 62
V +G+ LI F++ ++ F D ++ E + + + ILQ+K+++
Sbjct: 39 VAIGIFVLILFVFFIRPVSFQDPEKREEYIERLKKNHERKMILQDKQKE 87
>ref|NP_223445.1| putative HEAVY-METAL CATION-TRANSPORTING P-TYPE ATPASE
[Helicobacter pylori J99]
Length = 686
Score = 22.3 bits (46), Expect = 2.0
Identities = 8/36 (22%), Positives = 20/36 (55%)
Query: 5 ILTIMLVVSVLMGLVGLIAFLWGVKSGQFDDEKRML 40
+ ++ +V ++ G ++ G++ GQF DE ++
Sbjct: 104 VFVVLALVYLISGKDVILGAFRGLRKGQFFDENALM 139
>ref|NP_223828.1| putative [Helicobacter pylori J99]
Length = 391
Score = 21.6 bits (44), Expect = 3.4
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Query: 4 EILTIMLVVSVLMGLVGLIAFLWG 27
+I T+ML V L G+VG +FL+G
Sbjct: 246 DITTLMLFVFGLAGVVG--SFLFG 267
>ref|NP_223997.1| DNA transfer protein [Helicobacter pylori J99]
Length = 409
Score = 21.2 bits (43), Expect = 4.4
Identities = 8/15 (53%), Positives = 12/15 (79%)
Query: 15 LMGLVGLIAFLWGVK 29
LMGL+G +A +GV+
Sbjct: 214 LMGLLGFLACFFGVR 228
>ref|NP_223102.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 733
Score = 21.2 bits (43), Expect = 4.4
Identities = 9/17 (52%), Positives = 14/17 (81%)
Query: 5 ILTIMLVVSVLMGLVGL 21
+LTI + +SVL+ L+GL
Sbjct: 51 LLTISIALSVLIILIGL 67
>ref|NP_223967.1| CATION EFFLUX SYSTEM PROTEIN [Helicobacter pylori J99]
Length = 1035
Score = 20.8 bits (42), Expect = 5.8
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 11 VVSVLMGLVGLIAFLWGVKSGQFD 34
+++ L+ L+ +A LW +KS + D
Sbjct: 14 LLTTLVTLLIFLASLWAIKSVRLD 37
>ref|NP_223273.1| putative [Helicobacter pylori J99]
Length = 189
Score = 20.8 bits (42), Expect = 5.8
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 23 AFLWGVKSG 31
AFLWG K G
Sbjct: 50 AFLWGAKGG 58
>ref|NP_223243.1| putative [Helicobacter pylori J99]
Length = 678
Score = 20.8 bits (42), Expect = 5.8
Identities = 6/22 (27%), Positives = 17/22 (77%)
Query: 2 NTEILTIMLVVSVLMGLVGLIA 23
+ +++ + ++ +L+GL+GL+A
Sbjct: 63 DNRVVSSLAILFILIGLLGLLA 84
>ref|NP_223879.1| putative [Helicobacter pylori J99]
Length = 190
Score = 20.4 bits (41), Expect = 7.6
Identities = 11/46 (23%), Positives = 25/46 (53%)
Query: 4 EILTIMLVVSVLMGLVGLIAFLWGVKSGQFDDEKRMLESVLYDSAS 49
E+LT ++S ++ + L F +K+ + ++ LES L+ ++
Sbjct: 101 EVLTCSALISPVLEWLDLSVFRARLKAFDCSEIEKYLESGLWQGSA 146
>ref|NP_223574.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2399
Score = 20.4 bits (41), Expect = 7.6
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 25 LWGVKSGQFDDEKRMLESVLYDSASDLNEAI 55
L G+ S K M+ES D+ +++NE +
Sbjct: 1233 LLGILSQNSATLKEMIESNQLDNITNINEVL 1263
>ref|NP_223331.1| putative [Helicobacter pylori J99]
Length = 1167
Score = 20.4 bits (41), Expect = 7.6
Identities = 10/32 (31%), Positives = 21/32 (65%)
Query: 28 VKSGQFDDEKRMLESVLYDSASDLNEAILQEK 59
VK+ F + ++L+++ +S ++EAI +EK
Sbjct: 188 VKNTNFQNIWKVLKALRSHDSSLVDEAIFKEK 219
>ref|NP_223157.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 465
Score = 20.0 bits (40), Expect = 9.9
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 24 FLWGVKSGQFDDEK 37
F +GVK G++D E+
Sbjct: 156 FSFGVKGGRYDAEE 169
>ref|NP_222850.1| L-lactate permease [Helicobacter pylori J99]
Length = 551
Score = 20.0 bits (40), Expect = 9.9
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 18 LVGLIAFLWGVKSGQFDDEKRMLESVLYD 46
+ + + VKSG F+ K ++S+ D
Sbjct: 85 IAAIFLYKLSVKSGYFEILKESVQSITLD 113
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.319 0.136 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,657
Number of Sequences: 1491
Number of extensions: 1852
Number of successful extensions: 16
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of query: 63
length of database: 494,079
effective HSP length: 39
effective length of query: 24
effective length of database: 435,930
effective search space: 10462320
effective search space used: 10462320
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.3 bits)
S2: 40 (20.0 bits)