BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644748|ref|NP_206918.1| hypothetical protein
[Helicobacter pylori 26695]
(395 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222831.1| putative [Helicobacter pylori J99] 587 e-169
ref|NP_223830.1| putative [Helicobacter pylori J99] 375 e-105
ref|NP_223025.1| putative [Helicobacter pylori J99] 44 7e-06
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 41 6e-05
ref|NP_222774.1| putative [Helicobacter pylori J99] 37 7e-04
ref|NP_222772.1| putative [Helicobacter pylori J99] 37 9e-04
ref|NP_222882.1| putative PEPTIDYL-PROLYL CIS-TRANS ISOMERA... 36 0.002
ref|NP_223788.1| putative [Helicobacter pylori J99] 35 0.003
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 34 0.007
ref|NP_222961.1| putative [Helicobacter pylori J99] 34 0.007
ref|NP_224062.1| putative [Helicobacter pylori J99] 33 0.010
ref|NP_223176.1| putative [Helicobacter pylori J99] 33 0.010
ref|NP_222816.1| methyl-accepting chemotaxis protein (MCP) ... 33 0.017
ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATE... 32 0.028
ref|NP_224153.1| putative [Helicobacter pylori J99] 31 0.048
ref|NP_223610.1| putative [Helicobacter pylori J99] 30 0.082
ref|NP_223444.1| putative TYPE I RESTRICTION ENZYME (SPECIF... 30 0.14
ref|NP_222840.1| putative [Helicobacter pylori J99] 30 0.14
ref|NP_223515.1| putative [Helicobacter pylori J99] 29 0.24
ref|NP_223322.1| putative [Helicobacter pylori J99] 29 0.24
ref|NP_223159.1| putative [Helicobacter pylori J99] 29 0.24
ref|NP_223415.1| putative [Helicobacter pylori J99] 28 0.31
ref|NP_223195.1| cag island protein [Helicobacter pylori J99] 28 0.31
ref|NP_223697.1| 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYL TRANSFER... 28 0.41
ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99] 28 0.41
ref|NP_223477.1| putative [Helicobacter pylori J99] 28 0.53
ref|NP_223370.1| RNA POLYMERASE SIGMA-54 FACTOR [Helicobact... 27 0.70
ref|NP_223219.1| putative [Helicobacter pylori J99] 27 0.70
ref|NP_223135.1| putative [Helicobacter pylori J99] 27 0.70
ref|NP_224149.1| putative [Helicobacter pylori J99] 27 0.91
ref|NP_223773.1| putative [Helicobacter pylori J99] 27 0.91
ref|NP_223645.1| putative [Helicobacter pylori J99] 27 0.91
ref|NP_222912.1| putative [Helicobacter pylori J99] 27 0.91
ref|NP_223915.1| putative [Helicobacter pylori J99] 27 1.2
ref|NP_223889.1| putative [Helicobacter pylori J99] 27 1.2
ref|NP_223632.1| putative [Helicobacter pylori J99] 27 1.2
ref|NP_224035.1| ISOLEUCYL-TRNA SYNTHETASE [Helicobacter py... 26 1.6
ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter py... 26 1.6
ref|NP_223965.1| putative [Helicobacter pylori J99] 26 1.6
ref|NP_223661.1| putative [Helicobacter pylori J99] 26 1.6
ref|NP_223561.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 26 1.6
ref|NP_224041.1| putative [Helicobacter pylori J99] 26 2.0
ref|NP_224083.1| putative TYPE II DNA MODIFICATION ENZYME (... 25 2.6
ref|NP_224048.1| putative [Helicobacter pylori J99] 25 2.6
ref|NP_223787.1| putative [Helicobacter pylori J99] 25 2.6
ref|NP_223449.1| TRIGGER FACTOR [Helicobacter pylori J99] 25 2.6
ref|NP_223283.1| DNA MISMATCH REPAIR PROTEIN [Helicobacter ... 25 2.6
ref|NP_223761.1| putative [Helicobacter pylori J99] 25 3.5
ref|NP_223534.1| putative [Helicobacter pylori J99] 25 3.5
ref|NP_223205.1| cag island protein [Helicobacter pylori J99] 25 3.5
ref|NP_223158.1| putative [Helicobacter pylori J99] 25 3.5
ref|NP_222949.1| NEUTROPHIL-ACTIVATING PROTEIN A [Helicobac... 25 3.5
ref|NP_224131.1| putative [Helicobacter pylori J99] 25 4.5
ref|NP_223504.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 25 4.5
ref|NP_224125.1| N-UTILIZATION SUBSTANCE PROTEIN A [Helicob... 24 5.9
ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori... 24 5.9
ref|NP_223770.1| putative [Helicobacter pylori J99] 24 5.9
ref|NP_223721.1| putative [Helicobacter pylori J99] 24 5.9
ref|NP_223138.1| putative [Helicobacter pylori J99] 24 5.9
ref|NP_224176.1| TRANSCRIPTION-REPAIR COUPLING FACTOR [Heli... 24 7.7
ref|NP_223759.1| putative [Helicobacter pylori J99] 24 7.7
ref|NP_223180.1| putative [Helicobacter pylori J99] 24 7.7
>ref|NP_222831.1| putative [Helicobacter pylori J99]
Length = 412
Score = 587 bits (1514), Expect = e-169
Identities = 312/419 (74%), Positives = 345/419 (81%), Gaps = 31/419 (7%)
Query: 1 MESVKTGKTNKVGKNTEMANTKANKEXHFKQXSTITNIIRSXXGIFTKIAKKVRGLVKKH 60
MESVKT KTNKVGKNTE ANT+A+KE HFKQ S ITN +RS GIFTKIAKKVR LVKKH
Sbjct: 1 MESVKTVKTNKVGKNTETANTEASKETHFKQASAITNTLRSIGGIFTKIAKKVRELVKKH 60
Query: 61 PKKSSAALVVLTHIACKKAKELDDKVQDKSKQAEKENQINWWKYSGLTIATSLLLAACST 120
PKKSS ALVVLTHIACK+AKELDDKVQDKSKQAEKENQINWWKYSGLTIA SLLLAACST
Sbjct: 61 PKKSSVALVVLTHIACKRAKELDDKVQDKSKQAEKENQINWWKYSGLTIAASLLLAACST 120
Query: 121 GDVSEQIELEQEKQKTSNI----------------ETN-NQIKVEQEKQKT--SNIE-TN 160
GD+ +QIELEQEK++ + +TN ++I++EQE+QKT S IE N
Sbjct: 121 GDIDKQIELEQEKKEANKSGIKLEQERQKTEQERQKTNKSEIELEQERQKTNKSGIELAN 180
Query: 161 NQIKVEQEQQKTSNTQKDLVKEQKDLVKEQKDLVKEQKDLVKEQKDLVKTQKDFIKYVEQ 220
+QIK EQE+QKT +E++ K + +L ++++ + Q+DL+K QKDFIK EQ
Sbjct: 181 SQIKAEQERQKTE-------QEKQKANKSEIELEQQKQKTINTQRDLIKEQKDFIKETEQ 233
Query: 221 NCQENHNQFFIEKG----GIKAGIGIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPRSQR 276
NCQE H Q FI+K GI GI IE+EAECKTPKPAKTNQTPIQPKHLPNSKQPRSQR
Sbjct: 234 NCQEKHGQLFIKKARIKTGITTGIAIEIEAECKTPKPAKTNQTPIQPKHLPNSKQPRSQR 293
Query: 277 GSKAQELIAYLQKELEFLPYSQKAIAKQVDFYRPSSIAYLELDPRDFKVTEEWQKENLKI 336
GSKAQELIAYLQKELE LPYSQKAIAKQVDFY+PSSIAYLELDPRDFKVTEEWQKENLKI
Sbjct: 294 GSKAQELIAYLQKELESLPYSQKAIAKQVDFYKPSSIAYLELDPRDFKVTEEWQKENLKI 353
Query: 337 RSKAQAKMLEMRNPQAHLSNSQSLLFVQKIFADVNKEIEAVANTEKKAEKAGYGYSKRM 395
RSKAQAKMLEMRNPQAHL SQSLLFVQKIFAD+NKEIEAVANTEKK EKAGYGYSKRM
Sbjct: 354 RSKAQAKMLEMRNPQAHLPTSQSLLFVQKIFADINKEIEAVANTEKKTEKAGYGYSKRM 412
>ref|NP_223830.1| putative [Helicobacter pylori J99]
Length = 383
Score = 375 bits (962), Expect = e-105
Identities = 231/411 (56%), Positives = 261/411 (63%), Gaps = 58/411 (14%)
Query: 1 MESVKTGKTNKVGKNTEM-----ANTKANKEXHFKQXSTITNIIRSXXGIFTKIAKKVRG 55
M+ VKT K KV KN + A +A K+ KQ I+ I + K
Sbjct: 15 MKLVKTAKEKKVFKNVGISIMGIAFWEAIKDSIKKQ-------IKKSDWICGNV-KTADD 66
Query: 56 LVKKHPKKSSAALVVLTHIACKKAKEL--DDKVQDKSKQAEKE--NQINWWKYSGLTIAT 111
+K HP + + +T I DD+ + + QA+KE N + SG+ +
Sbjct: 67 YLKTHPNSWFNSAIGVTAITAMLMNVCFADDQSKKEVAQAQKEAENARDRANKSGIELEQ 126
Query: 112 SLLLAACSTGDVSEQIELEQEKQKTSNIETNNQI---KVEQEKQKTSNIETNNQIKVEQE 168
E+ + EQEKQKT + + K EQEKQKTSNIETNNQIKVEQE
Sbjct: 127 E------EQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQE 180
Query: 169 QQKTSNTQKDLVKEQKDLVKEQKDLVKEQKDLVKEQKDLVKTQKDFIKYVEQNCQENHNQ 228
QQKT +E++ TQKD + EQNCQENHNQ
Sbjct: 181 QQKTE----------------------------QEKQKTNNTQKDLVNKAEQNCQENHNQ 212
Query: 229 FFIEKGGIKAGIGIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPRSQRGSKAQELIAYLQ 288
FFI+K GIKAGI IE+EAECKTPKP KTNQTPIQPKHLPNSKQP SQRGSKAQELIAYLQ
Sbjct: 213 FFIKKLGIKAGIAIEIEAECKTPKPTKTNQTPIQPKHLPNSKQPHSQRGSKAQELIAYLQ 272
Query: 289 KELEFLPYSQKAIAKQVDFYRPSSIAYLELDPRDFKVTEEWQKENLKIRSKAQAKMLEMR 348
KELE LPYSQKAIAKQVDFYRPSSIAYLELDPRDF TEEWQKENLKIRSKAQAKMLEMR
Sbjct: 273 KELESLPYSQKAIAKQVDFYRPSSIAYLELDPRDFNATEEWQKENLKIRSKAQAKMLEMR 332
Query: 349 ----NPQAHLSNSQSLLFVQKIFADVNKEIEAVANTEKKAEKAGYGYSKRM 395
+PQAHLS SQSLL VQKIFADV+KEI+ VANTEKK EKAGYGYSKRM
Sbjct: 333 SLKPDPQAHLSTSQSLLLVQKIFADVSKEIKVVANTEKKVEKAGYGYSKRM 383
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 43.9 bits (102), Expect = 7e-06
Identities = 52/235 (22%), Positives = 110/235 (46%), Gaps = 21/235 (8%)
Query: 121 GDVSEQIELEQEKQKTSNIETNNQIKVEQ--EKQKTSNIETNNQIKVEQEQQKTSNTQKD 178
G + ++E Q T I N ++E + + + E NN E++ T N Q+
Sbjct: 115 GSNASELEPSQNLDPTQEILETNWDELENLGDLEALAKEEPNN----EEQLLPTLNEQEG 170
Query: 179 LVKEQKDLVKEQKDLVKEQKDLVKE--QKDLVKTQKDFIKYVEQNCQENHNQFFIE-KGG 235
+++ + +K+ VKE ++ VKE ++++ + +D E+ +++ Q +E
Sbjct: 171 ETPKEEAQEEVKKEEVKEMQEEVKEKQKQEVAENPQD-----EEKPKDDETQGSVEPPKD 225
Query: 236 IKAGIGIEVEAECKTPKPAKTNQTPI--QPKHLPNSKQPRSQRGSKAQELIAY--LQKEL 291
+ +E + E +TPK Q PI + + + KQ ++Q AQEL A L KE+
Sbjct: 226 EEVSKELETQEELETPKEETQEQEPIKEETQEIKEEKQEKTQDSPSAQELEAMQELVKEI 285
Query: 292 EFLPYSQKAIAKQVDFYRPSSIAYLELDPRDFKVTEEWQKENLKIRSKAQAKMLE 346
+ Q+ K+ + ++ +++ ++ ++ +E +E ++ K Q + LE
Sbjct: 286 QENSNDQEN-KKETQETQENTETPQDIETQELEIPKE--EETQEVAEKTQVQGLE 337
Score = 38.1 bits (87), Expect = 4e-04
Identities = 39/182 (21%), Positives = 81/182 (44%), Gaps = 28/182 (15%)
Query: 122 DVSEQIELEQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTSNTQKDLVK 181
+V E E +EKQK + N Q ++EK K + + + ++E K TQ++L
Sbjct: 185 EVKEMQEEVKEKQK-QEVAENPQ---DEEKPKDDETQGSVEPPKDEEVSKELETQEELET 240
Query: 182 EQKDLVKEQKDLVKEQKDLVKEQKDLVKTQ-----------KDFIKYVEQNCQENHNQFF 230
+++ ++++ +KE+ +KE+K KTQ ++ +K +++N + N+
Sbjct: 241 PKEET--QEQEPIKEETQEIKEEKQ-EKTQDSPSAQELEAMQELVKEIQENSNDQENKKE 297
Query: 231 IEKGGIKAGIGIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPRSQRGSKAQELIAYLQKE 290
+ E + +TP+ +T + I + ++Q +E IA +E
Sbjct: 298 TQ----------ETQENTETPQDIETQELEIPKEEETQEVAEKTQVQGLEKEEIAETPQE 347
Query: 291 LE 292
E
Sbjct: 348 KE 349
Score = 36.2 bits (82), Expect = 0.002
Identities = 39/190 (20%), Positives = 90/190 (46%), Gaps = 25/190 (13%)
Query: 125 EQIELEQEKQ-KTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTSNTQ--KDLVK 181
E E+++EKQ KT + + +++ QE K +N+Q ++ Q+ NT+ +D+
Sbjct: 254 ETQEIKEEKQEKTQDSPSAQELEAMQELVKEIQENSNDQENKKETQETQENTETPQDIET 313
Query: 182 EQKDLVKEQKDLVKEQKDLVK--EQKDLVKTQKDFIKYVEQNCQENHNQFFIEKGGIKAG 239
++ ++ KE++ +K V+ E++++ +T ++ K +++ E + +
Sbjct: 314 QELEIPKEEETQEVAEKTQVQGLEKEEIAETPQE--KEIQETQDETPQELEAQD------ 365
Query: 240 IGIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPRSQRGSKAQELIAYLQKEL------EF 293
E E +TPK ++ ++L + + P+ + E I + + + E
Sbjct: 366 ---EKLQENETPKDESMQES---AQNLQDKETPQEETQEDHYESIEDIPEPVMAKAMGEE 419
Query: 294 LPYSQKAIAK 303
LP+ +A+AK
Sbjct: 420 LPFLNEAVAK 429
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 40.8 bits (94), Expect = 6e-05
Identities = 70/339 (20%), Positives = 130/339 (37%), Gaps = 41/339 (12%)
Query: 8 KTNKVGKNTEMANTKANKEXHFKQXSTITNIIRSXXGIFTKIAKKVRGLVKKHPKKSSAA 67
K +K K E K+ K+ II+ + LV+ PK
Sbjct: 90 KASKTPKKEETKAQPKPKKTKEKKKEAPAPIIKKKEIEIVNTFENQTPLVENTPK----- 144
Query: 68 LVVLTHIACKKAKELDDKVQDKSKQAEKENQINWWKYSGLTIATSLLLAACSTGDVSEQI 127
++H +KAK+ K+Q+ K E N++ + A S + + ++SE
Sbjct: 145 --AVSHSQIEKAKQ---KLQEIQKSREALNKLTQSNTNTTNNANSASNVSNAKKEISEVK 199
Query: 128 ELEQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTSNTQKDLVKEQKDLV 187
+ EQE ++ NI+ +V + +T N N+ + ++ Q + +D+ KE ++
Sbjct: 200 KQEQEIKRHENIKRRTGFRVIKRNDETENETENSVTESKKPTQSAAAIFEDIKKEWQEKD 259
Query: 188 KEQKDLVKEQK-----DLVKEQK---------------DLVKTQKDFIKYVEQNCQENHN 227
K++ K+ K K D+ + D I + + Q+N N
Sbjct: 260 KQETKKTKKPSKPKATPTAKNNKSHKIDFSDVRDFKGNDIYDDETDEILLFDLHEQDNLN 319
Query: 228 QFFIEKGGIKAGIGIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPRSQRGSKAQELI--- 284
+ EK + I V + K P N+ I+ + SK+ R R +Q++I
Sbjct: 320 KEEEEKEA-RQNINDRVRVQRKNP---WMNEAGIKRQ----SKKKRVFRNDNSQKVIQSA 371
Query: 285 AYLQKELEFLPYSQKAIAKQVDFYRPSSIAYLELDPRDF 323
+ +E+ ++QKA D + L + DF
Sbjct: 372 IAIPEEVRVYEFAQKANLNLADVIKTLFNLGLMVTKNDF 410
Score = 28.1 bits (61), Expect = 0.41
Identities = 46/228 (20%), Positives = 94/228 (41%), Gaps = 33/228 (14%)
Query: 194 VKEQKDLVKEQKDLVKTQKDFIKYVEQNCQ-----ENHNQFFIEKGG-----IKAGIGIE 243
+ + DL K +L KTQK+ +EQ + + + E+ G I GI +
Sbjct: 1 MSDMVDLKKFVTELGKTQKELKNVIEQAKDIGLELKTNFKMTPEQAGKLYKYIVDGIKEQ 60
Query: 244 VEAECKTPKPAKTNQ----TPIQPKHLPN--SKQPRSQRGSKAQELIAYLQKELEF-LPY 296
++A T P + N+ T PK L SK P+ + + +K+ E P
Sbjct: 61 IQANQPTKNPKQDNKDDLNTAATPKPLAKKASKTPKKEETKAQPKPKKTKEKKKEAPAPI 120
Query: 297 SQKAIAKQVDFYR---------PSSIAYLELDPRDFKVTE-EWQKENLKIRSKAQAKMLE 346
+K + V+ + P ++++ +++ K+ E + +E L +++
Sbjct: 121 IKKKEIEIVNTFENQTPLVENTPKAVSHSQIEKAKQKLQEIQKSREALNKLTQSNTNTTN 180
Query: 347 MRNPQAHLSNSQSLLFVQKIFADVNKEIEAVANTEKKAEKAGYGYSKR 394
N +++SN+ +K ++V K+ + + E + G+ KR
Sbjct: 181 NANSASNVSNA------KKEISEVKKQEQEIKRHENIKRRTGFRVIKR 222
>ref|NP_222774.1| putative [Helicobacter pylori J99]
Length = 327
Score = 37.4 bits (85), Expect = 7e-04
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 11/122 (9%)
Query: 111 TSLLLAACSTGDVSEQIELEQEKQKTSNIETNNQIKVEQEKQK---TSNIETNNQI---- 163
T LL A + ++ E+E+ K N E ++I ++ K T N + N+Q+
Sbjct: 121 TRLLAARDRLTEEKRELTTEKERLKRENTELTHKITELTKENKALTTENDKLNHQVTALT 180
Query: 164 ----KVEQEQQKTSNTQKDLVKEQKDLVKEQKDLVKEQKDLVKEQKDLVKTQKDFIKYVE 219
+EQE+ + + L K +L KE + L + K L QK L T + +E
Sbjct: 181 NERDSLEQERARLQDAHGFLEKRCTNLEKENQRLTDKLKQLESAQKSLENTNNQLRQALE 240
Query: 220 QN 221
+
Sbjct: 241 NS 242
Score = 32.0 bits (71), Expect = 0.028
Identities = 52/257 (20%), Positives = 107/257 (41%), Gaps = 33/257 (12%)
Query: 133 KQKTSNIETNNQIKVEQEKQKTSNIE---TNNQIKVEQEQQKTSNTQKDLVKEQKDLVKE 189
K+ T N + V+ + SN + NN++ E+ + KT +KD+ L KE
Sbjct: 69 KENTELFAENESLSVKISGLEHSNDQLWQNNNKLTKEKAELKT---EKDI------LAKE 119
Query: 190 QKDLVKEQKDLVKEQKDLVKTQKDFIKYVEQNCQENHNQFFIEKGGIKAGIGIEVEAECK 249
L+ + L +E+++L T+K+ +K +N + H + K E +
Sbjct: 120 NTRLLAARDRLTEEKRELT-TEKERLK--RENTELTHKITELTK-----------ENKAL 165
Query: 250 TPKPAKTNQTPIQPKHLPNSKQPRSQRGSKAQELIAYLQKELEFLPYSQKAIAKQVDFYR 309
T + K N Q L N + Q ++ Q+ +L+K L +K + D +
Sbjct: 166 TTENDKLNH---QVTALTNERDSLEQERARLQDAHGFLEKRCTNL---EKENQRLTDKLK 219
Query: 310 PSSIAYLELDPRDFKVTEEWQKENLKIRSKAQAKMLEMRNPQAHLSNSQSLLFVQ-KIFA 368
A L+ + ++ + + N+++ + +E + ++ +SL ++ K
Sbjct: 220 QLESAQKSLENTNNQLRQALENSNVQLAQAKEKIAIEKSELEREIARLKSLEGMEAKSDL 279
Query: 369 DVNKEIEAVANTEKKAE 385
D++ A AN + K +
Sbjct: 280 DLHNRRLASANEDLKRQ 296
>ref|NP_222772.1| putative [Helicobacter pylori J99]
Length = 220
Score = 37.0 bits (84), Expect = 9e-04
Identities = 45/174 (25%), Positives = 73/174 (41%), Gaps = 19/174 (10%)
Query: 48 KIAKKVRGLVKKHPKKSSAALVVLTHIACKKAKELDDKVQDKSKQAEKEN---------- 97
K A K +KH K + +V + A KE ++ ++K+ A+KEN
Sbjct: 14 KDALKSTNFHEKHTKPTETTELVEENKALTTEKERLER-ENKNLTADKENLTKEKTELQK 72
Query: 98 QINWWKYSGLTIATSLLLAACSTGDVSEQIELEQEKQKTSNIETNNQIKVEQEKQKTSNI 157
Q+N K S + ++++ E K+KT E N + E+E+ T
Sbjct: 73 QVNELKNSKQVLENEKADWLREKENLTKDRE-NLTKEKTELTEKNKVLTTEKERLAT--- 128
Query: 158 ETNNQIKVEQEQQKTSNTQKD----LVKEQKDLVKEQKDLVKEQKDLVKEQKDL 207
E N K + E QK N K+ L E+ DL E L ++ DL ++ + L
Sbjct: 129 EKENLTKEKTESQKQVNELKNSKQVLENEKADLTNENTKLKTDKTDLTEKNQRL 182
Score = 35.8 bits (81), Expect = 0.002
Identities = 35/146 (23%), Positives = 64/146 (42%), Gaps = 8/146 (5%)
Query: 131 QEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTSNT-----QKDLVKEQKD 185
QE K + TN K + + T +E N + E+E+ + N +++L KE+ +
Sbjct: 10 QENPKDALKSTNFHEKHTKPTETTELVEENKALTTEKERLERENKNLTADKENLTKEKTE 69
Query: 186 LVKEQKDLVKEQKDLVKEQKDLVKTQKDFIKYVEQNCQENHNQFFIEKGGIKAGIGIEVE 245
L K+ +L ++ L E+ D ++ +++ K E +E EK + +
Sbjct: 70 LQKQVNELKNSKQVLENEKADWLREKENLTKDRENLTKEKTE--LTEKNKVLTTEKERLA 127
Query: 246 AECKTPKPAKTNQTPIQPKHLPNSKQ 271
E + KT ++ Q L NSKQ
Sbjct: 128 TEKENLTKEKT-ESQKQVNELKNSKQ 152
Score = 31.2 bits (69), Expect = 0.048
Identities = 23/97 (23%), Positives = 50/97 (50%), Gaps = 5/97 (5%)
Query: 120 TGDVSEQIELEQEKQKTSNIETNNQIKVEQEK----QKTSNIETNNQIKVEQEQQKTSNT 175
T D + + E QK N N++ +E EK ++ N+ T ++ + +E+ + +
Sbjct: 57 TADKENLTKEKTELQKQVNELKNSKQVLENEKADWLREKENL-TKDRENLTKEKTELTEK 115
Query: 176 QKDLVKEQKDLVKEQKDLVKEQKDLVKEQKDLVKTQK 212
K L E++ L E+++L KE+ + K+ +L +++
Sbjct: 116 NKVLTTEKERLATEKENLTKEKTESQKQVNELKNSKQ 152
>ref|NP_222882.1| putative PEPTIDYL-PROLYL CIS-TRANS ISOMERASE [Helicobacter pylori
J99]
Length = 299
Score = 35.8 bits (81), Expect = 0.002
Identities = 52/228 (22%), Positives = 91/228 (39%), Gaps = 24/228 (10%)
Query: 131 QEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTSNTQKDLVKEQKDLVKEQ 190
+EK+K + IE + + + + K + + K E K + K+Q + VK+
Sbjct: 74 KEKEKEALIEQAIRTALVENEAKAEKLNQTPEFKAMMEAVKKQALVEFWAKKQAEEVKKI 133
Query: 191 KDLVKEQKDLVKEQKDLVKTQKDFIKYVEQNCQENHNQFFIEKGGIKA-GIGIEVEAECK 249
+ KE +D KD + F+K QE H + + K +A I E++ + K
Sbjct: 134 QIPEKEMQDFYNANKDQL-----FVK------QEAHARHILVKTEDEAKRIISEIDKQPK 182
Query: 250 TPKPAKTNQTPIQPKHLPNSKQPRSQRGSKAQELIAYLQKELEFLPYSQKAIAKQVDFYR 309
K AK + + PNSK +Q G + QK +S+ A A Y
Sbjct: 183 AKKEAKFIELANRDTIDPNSK--NAQNGGD----LGKFQKNQMAPDFSKAAFALTPGDYT 236
Query: 310 PSSIA------YLELDPRDFKVTEEWQKENLKIRSKAQAKMLEMRNPQ 351
+ + + L +D VT +++ I+ Q K+ + R Q
Sbjct: 237 KTPVKTEFGYHIIYLISKDSPVTYTYEQAKPTIKGMLQEKLFQERMNQ 284
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 35.0 bits (79), Expect = 0.003
Identities = 32/122 (26%), Positives = 60/122 (48%), Gaps = 6/122 (4%)
Query: 80 KELDDKVQDKSKQAEKENQINWWKYSGLTIATSLLLAACSTGDVSEQIELEQEKQKTSNI 139
KELD+K + + +KE +I K + L A + ++E++ELE+EK + + +
Sbjct: 119 KELDEKSKQVQELHQKEAEIERLKRENNEAESRL--KAENEKKLNEKLELEREKIEKA-L 175
Query: 140 ETNNQIKVEQEKQKTSNIET---NNQIKVEQEQQKTSNTQKDLVKEQKDLVKEQKDLVKE 196
N++K +Q++++ + N Q K E Q+ ++L E+ K D V+E
Sbjct: 176 HEKNELKFKQQEEQLEMLRNELKNAQRKAELSSQQFQGEVQELAIEEFLRQKFPLDSVEE 235
Query: 197 QK 198
K
Sbjct: 236 IK 237
Score = 28.1 bits (61), Expect = 0.41
Identities = 22/105 (20%), Positives = 54/105 (50%), Gaps = 9/105 (8%)
Query: 127 IELEQEK--QKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTSNTQKDLVKEQK 184
+EL Q++ +K+ ++ +Q + E E+ K N E +++K N +K K +
Sbjct: 114 LELLQKELDEKSKQVQELHQKEAEIERLKRENNEAESRLKA-------ENEKKLNEKLEL 166
Query: 185 DLVKEQKDLVKEQKDLVKEQKDLVKTQKDFIKYVEQNCQENHNQF 229
+ K +K L ++ + K+Q++ ++ ++ +K ++ + + QF
Sbjct: 167 EREKIEKALHEKNELKFKQQEEQLEMLRNELKNAQRKAELSSQQF 211
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 33.9 bits (76), Expect = 0.007
Identities = 21/71 (29%), Positives = 37/71 (51%), Gaps = 3/71 (4%)
Query: 148 EQEKQKTSNIETNNQIKVEQEQQKTSNTQKDLVKEQKDLVKE---QKDLVKEQKDLVKEQ 204
E+EKQ+ + T K+ +E +K+ D V + K+ + +K L E + L++E
Sbjct: 772 EKEKQECEKLLTPEARKLLEESKKSVKAYLDCVSKAKNEAERKECEKLLTPEARKLLEEA 831
Query: 205 KDLVKTQKDFI 215
K+ VK KD +
Sbjct: 832 KESVKAYKDCV 842
Score = 33.9 bits (76), Expect = 0.007
Identities = 21/71 (29%), Positives = 37/71 (51%), Gaps = 3/71 (4%)
Query: 148 EQEKQKTSNIETNNQIKVEQEQQKTSNTQKDLVKEQKDLVKE---QKDLVKEQKDLVKEQ 204
E+EKQ+ + T K+ +E +K+ D V + K+ + +K L E + L++E
Sbjct: 848 EKEKQECEKLLTPEARKLLEESKKSVKAYLDCVSKAKNEAERKECEKLLTPEARKLLEEA 907
Query: 205 KDLVKTQKDFI 215
K+ VK KD +
Sbjct: 908 KESVKAYKDCV 918
Score = 31.2 bits (69), Expect = 0.048
Identities = 23/84 (27%), Positives = 38/84 (44%), Gaps = 2/84 (2%)
Query: 124 SEQIELEQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQ-QKTSNTQKDLVKE 182
++Q L++E QK N E + + QE+ +T I+ K +Q+ Q SN +
Sbjct: 104 TQQKSLDEETQKL-NEEDDQENNEHQEETQTDLIDDETSEKTQQDSPQDLSNEEATEANH 162
Query: 183 QKDLVKEQKDLVKEQKDLVKEQKD 206
+DL+KE + D E D
Sbjct: 163 FEDLLKESTESSDNHLDNPTESSD 186
Score = 30.8 bits (68), Expect = 0.063
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 139 IETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTSNTQKDLVKEQKDLVKEQ--KDLVKE 196
I ++N I E T ET IK + + K + K L ++KD KE+ K +
Sbjct: 1458 IASDNPIYASIEPDITKQYETEKTIKDKSLEAKLA---KALGGDKKDDDKEKGKKPTAET 1514
Query: 197 QKDLVKEQKDLVKTQKDFIKYVEQNCQENHNQFFIEKG 234
+ + K KD+ +T K+ + +N +E F E G
Sbjct: 1515 KAESNKIDKDVAETAKNISEIALKNKKEKSGDFVDENG 1552
Score = 27.3 bits (59), Expect = 0.70
Identities = 58/248 (23%), Positives = 109/248 (43%), Gaps = 27/248 (10%)
Query: 120 TGDVSEQIELEQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQ-------QKT 172
T + + +E E +K + ++ ++ + E+EKQ+ + T K+ + Q KT
Sbjct: 1042 TPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKLLENQALDCLKNAKT 1101
Query: 173 SNTQKDLVKE-QKDLVKE--QKDLVKEQKDLVKEQKDLVKTQKDFIKYVEQNCQENHNQF 229
+K VK+ KDL K+ K+ VK D V ++ K +K+ K + ++ +
Sbjct: 1102 EAEKKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARN-EKEKKECEKLLTPEARKLLEE- 1159
Query: 230 FIEKGGIKAGIGIEVEAECKT-PKPAKTNQTPIQPKHLPNSKQPRSQRGSKAQELIAYLQ 288
K +KA + +A+ + K + TP K L +K+ S + K A +
Sbjct: 1160 --SKKSVKAYLDCVSKAKNEAEKKECEKLLTPEARKLLEEAKE--SVKAYKDCVSRARNE 1215
Query: 289 KELE-----FLPYSQKAIAKQVDFYRPSSIAYLELDPRDFKVTEEWQKENLKIRSKAQAK 343
KE + P ++K + ++V + S AYL+ R E+ ++E K+ + K
Sbjct: 1216 KEKQECEKLLTPEARKLLEQEV---KKSVKAYLDCVSR--ARNEKEKQECEKLLTPEARK 1270
Query: 344 MLEMRNPQ 351
LE + Q
Sbjct: 1271 FLEKQRQQ 1278
Score = 26.2 bits (56), Expect = 1.6
Identities = 24/91 (26%), Positives = 44/91 (47%), Gaps = 3/91 (3%)
Query: 130 EQEKQKTSNIETNNQIK-VEQEKQKTSNIETNNQIKVEQEQQKTSNTQKDLVKEQKDLVK 188
E+EKQ+ + T K +EQE +K+ + + E++K +K L E + L++
Sbjct: 1031 EKEKQECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEK-QECEKLLTPEARKLLE 1089
Query: 189 EQK-DLVKEQKDLVKEQKDLVKTQKDFIKYV 218
Q D +K K ++++ + KD K V
Sbjct: 1090 NQALDCLKNAKTEAEKKRCVKDLPKDLQKKV 1120
Score = 24.3 bits (51), Expect = 5.9
Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Query: 130 EQEKQKTSNIETNNQIKV-EQEKQKT--SNIETNNQIKVEQEQQK-----TSNTQKDLVK 181
E+EKQ+ + T K+ EQE +K+ + ++ ++ + E+E+Q+ T +K L K
Sbjct: 1215 EKEKQECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLEK 1274
Query: 182 EQKDLVKEQKDLVK 195
+++ K KD +K
Sbjct: 1275 QRQQKDKAIKDCLK 1288
>ref|NP_222961.1| putative [Helicobacter pylori J99]
Length = 142
Score = 33.9 bits (76), Expect = 0.007
Identities = 31/122 (25%), Positives = 61/122 (49%), Gaps = 11/122 (9%)
Query: 124 SEQIELEQ------EKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTSNTQK 177
S+++EL+Q +KQ + N ++ +T +++ ++++E QQ+ N K
Sbjct: 25 SKRLELQQNEREVLDKQAQLSAFKNPELGGMSLFLQTQQLKSALRMEIEYYQQEGENLTK 84
Query: 178 DLVKEQKDLVKEQKDLVKEQKDLVKEQKDLVKTQKDFIKYVEQN-CQENHNQFFIEKGGI 236
DL +KD + ++L K + L KE+ + +K+ ++ EQ EN +KGG+
Sbjct: 85 DLKILEKDYLLANQELEKAKIILEKEK----QKEKEILEKKEQALLDENAMILHWQKGGL 140
Query: 237 KA 238
A
Sbjct: 141 HA 142
>ref|NP_224062.1| putative [Helicobacter pylori J99]
Length = 258
Score = 33.5 bits (75), Expect = 0.010
Identities = 32/129 (24%), Positives = 55/129 (41%), Gaps = 28/129 (21%)
Query: 195 KEQKDLVKEQKDLVKTQKDFIKYVEQNCQENHNQFFIEKGGIKAGIGIEV-EAECKTPKP 253
KE LV ++ + + +++ +K + QN +E K +GI+ + E TPKP
Sbjct: 48 KEAIILVGVKESVKEVKEESVKEIHQNAEE------------KQSLGIKTPQEEIITPKP 95
Query: 254 AKTNQTPIQPKHLPNSKQPRSQRGSKAQELIAYLQKELEFLPYSQKAIAKQVDFYRPSSI 313
K +TP + H G K E+ L+ LPY + +V Y P +
Sbjct: 96 PK--KTPKEESH----------NGDKLHEIKQELKDLFSHLPYKINKV--EVSLYEP-GV 140
Query: 314 AYLELDPRD 322
+++D D
Sbjct: 141 LLIDIDGED 149
>ref|NP_223176.1| putative [Helicobacter pylori J99]
Length = 450
Score = 33.5 bits (75), Expect = 0.010
Identities = 23/114 (20%), Positives = 56/114 (48%), Gaps = 6/114 (5%)
Query: 125 EQIELEQEKQKTSNIETNNQIKVEQEKQ-KTSNIETNNQIKVEQEQQKTSNTQKDLVKEQ 183
+++ +E+++++ E +IK E K+ K +N T N +E++ + + + D +E+
Sbjct: 243 KEVRIEKKEERIDARENKREIKQEAIKEPKKANQGTENAPTLEEKNYQKAERKFDAKEER 302
Query: 184 KDLVKEQKDLVKEQKDLVKEQKDLVKTQKDFIKYVEQNCQENHNQFFIEKGGIK 237
+ E+K +K + E+++ ++D E+ +E ++KG K
Sbjct: 303 RRSRDERKKTKATKKAMEFEEREKEHDERD-----EKETEERRKALEMDKGNEK 351
Score = 32.3 bits (72), Expect = 0.022
Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Query: 131 QEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTSNTQKDLVKEQKDLVKEQ 190
+E++K ++ N+ +E ++ N E+ N+ E ++KE +
Sbjct: 337 EERRKALEMDKGNEKVNAKENEREINQESANEPSSENNATLKDTENTSVLKESAAKKEAP 396
Query: 191 KDLVKEQKDLVKEQKDLVKTQKDFIKYVEQNCQENHNQ 228
K KE+K +KE+K K ++ ++ EQ +E+ +
Sbjct: 397 KPSSKEEKRRLKEEKKKAKAEQRAREF-EQRAREHQER 433
Score = 30.8 bits (68), Expect = 0.063
Identities = 30/144 (20%), Positives = 58/144 (39%), Gaps = 28/144 (19%)
Query: 75 ACKKAKELDDKVQDKSKQAEKENQINWWKYSGLTIATSLLLAACSTGDVSEQIELEQEKQ 134
A KKA E +++ ++ ++ EKE T + + +E+++ +
Sbjct: 314 ATKKAMEFEEREKEHDERDEKE-----------------------TEERRKALEMDKGNE 350
Query: 135 KTSNIETNNQIKVEQEKQKTSN----IETNNQIKVEQEQQKTSNTQKDLVKEQKDLVKEQ 190
K + E +I E + +S ++ V +E K KE+K +KE+
Sbjct: 351 KVNAKENEREINQESANEPSSENNATLKDTENTSVLKESAAKKEAPKPSSKEEKRRLKEE 410
Query: 191 KDLVK-EQKDLVKEQKDLVKTQKD 213
K K EQ+ EQ+ ++D
Sbjct: 411 KKKAKAEQRAREFEQRAREHQERD 434
>ref|NP_222816.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 564
Score = 32.7 bits (73), Expect = 0.017
Identities = 28/102 (27%), Positives = 47/102 (45%), Gaps = 8/102 (7%)
Query: 119 STGDVSEQIELEQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTSNTQKD 178
ST + + +L Q Q+T N+ + K K ++I + +EQ Q +K
Sbjct: 293 STLNKTSMDKLVQITQETQKSMKNSSTTLNSVKNKATDIASMMNASIEQSQ----GLRKR 348
Query: 179 LVKEQKDLVKEQKDLVKEQKDLVKEQKDLVKTQKDFIKYVEQ 220
L+ E + LVKE KD + DL + + T+++ VEQ
Sbjct: 349 LI-ETQGLVKESKDAI---GDLFSQITESAHTEEELSSKVEQ 386
>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN
[Helicobacter pylori J99]
Length = 1167
Score = 32.0 bits (71), Expect = 0.028
Identities = 61/315 (19%), Positives = 128/315 (40%), Gaps = 20/315 (6%)
Query: 80 KELDDKVQDKSKQAEKENQ-INWWKYSGLTIATSLLLAACSTGDVSEQIELEQEKQKTSN 138
++L+DK+ K ++ N+ + + S + L + + ++ KQ +
Sbjct: 558 QDLEDKLIAKGLSPQEANKLVKDFLSSNKELVGKALNFNKAVAEAKNTGNYDEVKQAQKD 617
Query: 139 IETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTSNTQKD----LVKEQKD----LVKEQ 190
+E + + + EK N+E+ + K + E + +N+QKD L+ ++ + +
Sbjct: 618 LEKSLKKRERLEKDVAKNLESKSGNKNKMEAKSQANSQKDEIFALINKEANRDARAIAYA 677
Query: 191 KDLVKEQKDLVKEQKDLVKTQKDFIKYVEQNCQENHNQFFIEKGGIKAGIGIEVEAECKT 250
++L +++L + +++ K KDF K ++ + F + +KA G +
Sbjct: 678 QNLKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKAEETLKALKGSVKDLGINP 737
Query: 251 PKPAKTNQTPIQPKHLPNSKQPRSQRGSKAQELIAYLQKELEFLPYSQKAIAKQVDFYRP 310
+K N K ++ SK + + L+ ++ + +QK K + +
Sbjct: 738 EWISKVENLNAALNEFKNGK---NKDFSKVTQAKSDLENSIKDVIINQKITDKVDNLNQA 794
Query: 311 SSIAYLELDPRDFKVTEEWQKENLKIRSKAQAKMLEMRNPQAHLSNSQSLLFVQKIFADV 370
S+A DF E+ +LK SK Q +N + + +L Q + V
Sbjct: 795 VSVAKA---TGDFSGVEQ-ALADLKNFSKEQLAQQAQKNEDFNTGKNSAL--YQSVKNGV 848
Query: 371 NKEIEAVANTEKKAE 385
N + V N KAE
Sbjct: 849 NGTL--VGNGLSKAE 861
Score = 24.6 bits (52), Expect = 4.5
Identities = 14/38 (36%), Positives = 21/38 (54%), Gaps = 2/38 (5%)
Query: 78 KAKELD--DKVQDKSKQAEKENQINWWKYSGLTIATSL 113
KA D D++ DK K + K+N +N + S + TSL
Sbjct: 1000 KASHFDNLDQMIDKLKDSTKKNVVNLYVESAKKVPTSL 1037
>ref|NP_224153.1| putative [Helicobacter pylori J99]
Length = 435
Score = 31.2 bits (69), Expect = 0.048
Identities = 45/203 (22%), Positives = 85/203 (41%), Gaps = 22/203 (10%)
Query: 171 KTSNTQKDLVKEQKDLVKEQKDLVKEQKDLVKEQKDLVKTQKDFIKYVEQNCQENHNQFF 230
K N QK+ +KE+ + +++ K L E K+L +TQ + + N+
Sbjct: 190 KRLNAQKERLKEKLEKLEDPKTLQLEAKEL--------QTQASLLLTYQHLINRRENRVI 241
Query: 231 IEKGGIKAGIGIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPRSQRGSKAQELIAYLQKE 290
++ K + +E + P A N+ K Q +E IA+ + +
Sbjct: 242 LKDFEDKECM---IEIDKSMPLNAFINKKFTLSKKKKQKSQFLYLEEENLKEKIAFKENQ 298
Query: 291 LEFL-PYSQKAI------AKQVDFYRPSSIAYLELDPRDFKV-TEEWQKENLKIRSKAQA 342
+ ++ +++++ K RP + Y L +DFK+ + QKEN+K+ A+A
Sbjct: 299 INYVRDAAEESVLEMFMPVKNSKIKRPMN-GYEVLYYKDFKIGLGKNQKENIKLLQDARA 357
Query: 343 KMLEMRNPQAHLSNSQSLLFVQK 365
L M + S ++F QK
Sbjct: 358 NDLWMH--VRDIPGSHLIVFCQK 378
>ref|NP_223610.1| putative [Helicobacter pylori J99]
Length = 267
Score = 30.4 bits (67), Expect = 0.082
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 122 DVSEQIELEQEKQKTSNIET-NNQIKVEQEKQKTSNIETNNQIKVEQE-QQKTSNTQKDL 179
++ E I E+ Q IE N+IK + EKQ+ E K+ E + N K++
Sbjct: 94 NIEEDIAKERSNQANREIENLQNEIKHKSEKQEVLKKEMLELEKLALELENLVENEVKNI 153
Query: 180 VKEQKDLVKEQKDLVKE 196
+ Q+ + K++++LV++
Sbjct: 154 KETQQIIFKKKEELVEK 170
>ref|NP_223444.1| putative TYPE I RESTRICTION ENZYME (SPECIFICITY SUBUNIT)
[Helicobacter pylori J99]
Length = 454
Score = 29.6 bits (65), Expect = 0.14
Identities = 15/52 (28%), Positives = 25/52 (47%)
Query: 344 MLEMRNPQAHLSNSQSLLFVQKIFADVNKEIEAVANTEKKAEKAGYGYSKRM 395
+L++ P L Q ++ + F ++N E+ NTE A K Y Y + M
Sbjct: 160 LLKITIPIPPLEIQQEIVTILDAFTELNTELNTELNTELNARKKQYQYYQNM 211
>ref|NP_222840.1| putative [Helicobacter pylori J99]
Length = 285
Score = 29.6 bits (65), Expect = 0.14
Identities = 18/102 (17%), Positives = 48/102 (46%), Gaps = 3/102 (2%)
Query: 123 VSEQIELEQEKQKTSNIETNNQIKVEQEKQKT---SNIETNNQIKVEQEQQKTSNTQKDL 179
V +++E + EK + + + ++E S+ +T N + + +NT K+
Sbjct: 179 VLKKMEEQAEKDTKAAFQKRSSGELESHTDSPEFISSSKTQNSSNPDLDPMTNANTLKET 238
Query: 180 VKEQKDLVKEQKDLVKEQKDLVKEQKDLVKTQKDFIKYVEQN 221
++ + +++ K+++ L K++K Q++F K + +
Sbjct: 239 ASKEPETSSKKEKKPKKKRRLSKKEKQQQALQQEFEKQISDS 280
Score = 24.6 bits (52), Expect = 4.5
Identities = 20/84 (23%), Positives = 34/84 (39%), Gaps = 2/84 (2%)
Query: 154 TSNIETNNQIKVEQEQQKTSNTQKDLVKEQKDLVKEQKDLVK--EQKDLVKEQKDLVKTQ 211
++ I T V + T N +KD + K +V +K+ VK Q K K +
Sbjct: 21 SATINTTVDPNVMFSESSTGNVKKDRKRVLKSMVDLEKERVKNFNQYSETKMSKGDLSAF 80
Query: 212 KDFIKYVEQNCQENHNQFFIEKGG 235
F K ++C E ++ + G
Sbjct: 81 GAFFKGSLEDCVEQKICYYEHRNG 104
>ref|NP_223515.1| putative [Helicobacter pylori J99]
Length = 541
Score = 28.9 bits (63), Expect = 0.24
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 130 EQEKQKTSNIE-TNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTSNTQKDLVKEQKDLVK 188
E+E+ KT E T +Q Q+ + +N N I E +K K KE+K +K
Sbjct: 442 EEEEVKTRRPEPTKDQNNAIQQGETKNNESKNTPISKENAAKK--EAPKPSSKEEKRRLK 499
Query: 189 EQKDLVK-EQKDLVKEQKDLVKTQKD 213
E+K K EQ+ EQ+ ++D
Sbjct: 500 EEKKKAKAEQRAREFEQRAREHQERD 525
>ref|NP_223322.1| putative [Helicobacter pylori J99]
Length = 413
Score = 28.9 bits (63), Expect = 0.24
Identities = 60/289 (20%), Positives = 115/289 (39%), Gaps = 27/289 (9%)
Query: 10 NKVGKNTEMANTKANKEXHFKQXSTITNIIRSXXGIFTKIAK-KVRGLVKKHPKKSSAAL 68
NK KN ++ N + KE K+ KI K++G K +
Sbjct: 53 NKELKNKDLKNKEEKKETKAKRKPRAEVHHGDAKNPTPKITPPKIKGSSKGVQNQG---- 108
Query: 69 VVLTHIACKKAKELDDKVQDKSKQAEKENQINWWKYSGLTIATSLLLAACSTGDVS---- 124
V + + K+ + +K+K+ +Q N + AT+ L G +S
Sbjct: 109 -VQNNAPKPEEKDTTPQATEKNKETSPSSQFNSI-FGNPNNATNNTLEDKVVGGISLLVN 166
Query: 125 ------EQIELEQEKQKTSNIETNNQIKVEQEK-QKTSNIETN-NQIKVEQEQQKTSNTQ 176
QI+ EQEK K S + +++ E+ K Q+ ++ + + K++QE + Q
Sbjct: 167 GSPITLYQIQEEQEKSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQEMAMMAQQQ 226
Query: 177 -KDLVKEQKDLVKEQKDLVKEQKDLVKEQKDLVKTQKDFIKYVEQNCQENHNQFFIEKGG 235
DL ++ L+ E K +D +KE ++ + ++ + E + + K
Sbjct: 227 GMDLDHFKQMLMAEGH--YKLYRDQLKEHLEMQELLRNILLTNVDTSSETKMREYYNKHK 284
Query: 236 IKAGIGIEVEAECKTPKPAKTNQTPIQPKHL-PNSKQPRSQRGSKAQEL 283
+ I E+E T + TNQ ++ PN + P + ++ E+
Sbjct: 285 EQFSIPTEIE----TVRYTSTNQEDLERAMADPNLEVPGVSKANEKIEM 329
>ref|NP_223159.1| putative [Helicobacter pylori J99]
Length = 181
Score = 28.9 bits (63), Expect = 0.24
Identities = 38/175 (21%), Positives = 67/175 (37%), Gaps = 19/175 (10%)
Query: 10 NKVGKNTEMANTKANKEXHFKQXSTITNIIRSXXGIFTKIAKKVRGLVKKHPKKSSAALV 69
N E+ KE + + N + S ++ ++G+V+ V
Sbjct: 5 NLPNSTLEITQQPEVKEITNELLKQLQNALHSNALFTEQVELSLKGIVR-------ILEV 57
Query: 70 VLTHIACKKAKELDDKVQDKSKQAEKENQINWWKYSGLTIATSLLLAACSTGDVSEQIEL 129
+L+ K A E+D ++ N I W +G ++ T + + + +
Sbjct: 58 LLSLDFFKNANEIDSSLR---------NSIEWLSNAGESLKTKMKEYERFFSEFNTSMHA 108
Query: 130 -EQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTSNTQKDLVKEQ 183
EQE T N T N IK E +K + IE + +EQE QK+ ++ Q
Sbjct: 109 NEQEVTATLNANTEN-IKSEIKKLENQLIEETRML-LEQETQKSVKAYNAMMGHQ 161
>ref|NP_223415.1| putative [Helicobacter pylori J99]
Length = 529
Score = 28.5 bits (62), Expect = 0.31
Identities = 17/96 (17%), Positives = 49/96 (50%), Gaps = 3/96 (3%)
Query: 124 SEQIELEQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTSNTQKDLVKEQ 183
S++ +L+Q+ + N Q ++++ ++E ++ V E++ +K+L KE+
Sbjct: 66 SQECKLQQQYE---NKNLQLQTHFDKKEAHLKHLEAQHKEFVRDEKRYLEKEKKELEKER 122
Query: 184 KDLVKEQKDLVKEQKDLVKEQKDLVKTQKDFIKYVE 219
+ L +E+++ K++ + Q + +++ Y +
Sbjct: 123 QILEQERENFKKQRAICKEAQAKALDAMLNYMAYTK 158
>ref|NP_223195.1| cag island protein [Helicobacter pylori J99]
Length = 522
Score = 28.5 bits (62), Expect = 0.31
Identities = 29/153 (18%), Positives = 70/153 (44%), Gaps = 16/153 (10%)
Query: 113 LLLAACSTGDVSEQIE-LEQEKQKTSNIETNNQIKVEQEKQKTSNIETN--NQIKVEQEQ 169
L++ A ++ EQ + LE+EK+ + + K E+ K++ + N N
Sbjct: 131 LIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANLENLTNAMSNP 190
Query: 170 QKTSNTQK--DLVKEQKDLVKEQKDLVKEQKDLVKEQKDLVKTQKDFIKYVEQNCQENHN 227
Q SN + +L+K+Q++ +Q + +++ ++ + Q + +K +E+ ++
Sbjct: 191 QNLSNNKNLSELIKQQRENELDQMERLEDMQE---------QAQANALKQIEELNKKQAE 241
Query: 228 QFFIEKGGIKAGIGIEVEAECKTPKPAKTNQTP 260
+ ++ K I I+ + K+P+ +P
Sbjct: 242 EAVRQRA--KDKISIKTDKSQKSPEDNSIELSP 272
>ref|NP_223697.1| 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYL TRANSFERASE [Helicobacter pylori
J99]
Length = 429
Score = 28.1 bits (61), Expect = 0.41
Identities = 14/47 (29%), Positives = 24/47 (50%)
Query: 186 LVKEQKDLVKEQKDLVKEQKDLVKTQKDFIKYVEQNCQENHNQFFIE 232
L + K +V+ KDL ++ D +K K + C+E + F+IE
Sbjct: 312 LFAKGKSMVRNAKDLRAKESDRIKAVVSNFKALGIECEEFEDGFYIE 358
>ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99]
Length = 856
Score = 28.1 bits (61), Expect = 0.41
Identities = 14/69 (20%), Positives = 38/69 (54%), Gaps = 2/69 (2%)
Query: 131 QEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTSNTQKDLVKEQKDLVKEQ 190
+E QKT +E+ + + Q+K SN+E+ + ++ Q+ N ++ +++++
Sbjct: 132 KELQKT--LESLRKGRTIQDKNDDSNLESLEKFGIDLTQKALENKLDPVIGRDEEIIRMM 189
Query: 191 KDLVKEQKD 199
+ L+++ K+
Sbjct: 190 QILIRKTKN 198
Score = 27.3 bits (59), Expect = 0.70
Identities = 37/181 (20%), Positives = 76/181 (41%), Gaps = 13/181 (7%)
Query: 125 EQIELEQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTSNTQKDLVKEQK 184
+++E+E++ + N E+N++ E K+ + E Q++ + E +K++ KE
Sbjct: 417 QRLEMEKQALEMENKESNHKRMQEILKELSDLKEEKIQLEAQFE------NEKEVFKEIS 470
Query: 185 DLVKEQKDLVKEQKDLVKEQKDLVKTQKDFIKYVEQNCQENHNQFFIEKGGIKAGIGIEV 244
L E + L KE + + + ++ K E+ +E Q E +
Sbjct: 471 RLKMEMEGLKKEAERFKRNGDYQQAAEIEYSKIPEKEKKEKELQHKWETMQQNGALLQNA 530
Query: 245 EAECKTPKPAKTNQTPIQPKHLPNSKQPRSQRGSKAQELIAYLQKELEFLPYSQKAIAKQ 304
E + Q H+P K +S++ ++ + + LQK + + KAIAK
Sbjct: 531 LTENNIAEIVS------QWTHIPVQKMLQSEK-NRVLNIESELQKRVVGQEKALKAIAKA 583
Query: 305 V 305
+
Sbjct: 584 I 584
>ref|NP_223477.1| putative [Helicobacter pylori J99]
Length = 153
Score = 27.7 bits (60), Expect = 0.53
Identities = 15/52 (28%), Positives = 26/52 (49%)
Query: 280 AQELIAYLQKELEFLPYSQKAIAKQVDFYRPSSIAYLELDPRDFKVTEEWQK 331
A E++ Y+ K+ I KQ FYRPS++ +D ++ E ++K
Sbjct: 88 ALEILGYVPKDSLEKANFYAPIKKQAQFYRPSALGLFHNPIKDARLHECFEK 139
>ref|NP_223370.1| RNA POLYMERASE SIGMA-54 FACTOR [Helicobacter pylori J99]
Length = 414
Score = 27.3 bits (59), Expect = 0.70
Identities = 21/72 (29%), Positives = 36/72 (49%), Gaps = 3/72 (4%)
Query: 145 IKVEQEKQKTSNIETNNQIKVEQEQQKTSNTQKDLVKEQKDLVKEQKDLVKEQKDLVKEQ 204
++V+ E N E+ I +E+ + K S+ K+ +KE KDL+ L + + K
Sbjct: 225 LEVDNEMIVRLNDESYPTISLEENRFKDSDYLKEKLKEAKDLIDA---LNLRKATIYKIG 281
Query: 205 KDLVKTQKDFIK 216
L++ Q DF K
Sbjct: 282 LMLLEYQYDFFK 293
>ref|NP_223219.1| putative [Helicobacter pylori J99]
Length = 321
Score = 27.3 bits (59), Expect = 0.70
Identities = 24/134 (17%), Positives = 58/134 (42%), Gaps = 6/134 (4%)
Query: 81 ELDDKVQDKSKQAEKENQINWWKYSGLTIATSLLLAACSTGDVSEQIELEQEKQKTSNIE 140
ELD + + K++ + WK + + +++ S ++ E+E+++ +
Sbjct: 131 ELDYSINQANTSLSKKS--SKWKPFVIVLGVVVIILVVVIIQNSSSLKEEREQERAIKPD 188
Query: 141 TNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTSNTQKDLVKEQKDLVK--EQKDLVKEQK 198
T N E + +E K+E++ ++ K+ +KE + + ++D+ E
Sbjct: 189 TKNNSFNETNPTEEKKLEPTP--KLEEKHKEQDKQGKEAIKENPNTIYIIPKRDIWVEVI 246
Query: 199 DLVKEQKDLVKTQK 212
DL +++ K K
Sbjct: 247 DLDEKKNSFQKVFK 260
>ref|NP_223135.1| putative [Helicobacter pylori J99]
Length = 631
Score = 27.3 bits (59), Expect = 0.70
Identities = 32/147 (21%), Positives = 62/147 (41%), Gaps = 23/147 (15%)
Query: 83 DDKVQDKSKQAEKENQINWWKYSGLTIATSLLLAACSTGDVSEQIELEQEKQKTSNIETN 142
D+K D S E + ++ T + SL L S + E + Q K K N+
Sbjct: 432 DEKEIDTSSLISVEGNVEGYE----TFSDSLFLL--SKERIEEALHYYQPK-KVYNLSYG 484
Query: 143 NQIKVEQEKQKTSNIETNNQIKVEQEQQKTSNTQKDLVKEQKDLVKEQKDLVKEQKDLVK 202
+IK ++Q+K++Q ++ D + K + + + K+ K+L
Sbjct: 485 AKIKHAVSLN-------HSQVKLKQINKQ------DAIVRIKSMFSPRSNHAKDLKNL-- 529
Query: 203 EQKDLVKTQKDFIKYVEQNCQENHNQF 229
QK+L++ ++DF ++ C+ F
Sbjct: 530 -QKNLIRFKEDFFTHLNTPCKTKQEAF 555
>ref|NP_224149.1| putative [Helicobacter pylori J99]
Length = 293
Score = 26.9 bits (58), Expect = 0.91
Identities = 25/109 (22%), Positives = 46/109 (41%), Gaps = 8/109 (7%)
Query: 128 ELEQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTSNTQKDLVKEQKDLV 187
++E K+ N + +E +K +N +K + K+ + +VKE D
Sbjct: 68 DIETLKELLVKFYYQNWVATREEPKKQTNCNIIKALK----ENKSVESIASIVKEYLDYH 123
Query: 188 KEQKDLVKEQKD--LVKEQKDLVKTQ--KDFIKYVEQNCQENHNQFFIE 232
K +D K +D L ++ K K K + VE + +N N +I+
Sbjct: 124 KITQDFKKNLQDSKLYEQHKKSSKNSWVKPVLILVEYSMSDNANPAYIK 172
>ref|NP_223773.1| putative [Helicobacter pylori J99]
Length = 263
Score = 26.9 bits (58), Expect = 0.91
Identities = 22/96 (22%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 124 SEQIELEQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTSNTQKDLVKEQ 183
+E+IE EKQ +E + K E E+ + N + + ++ + QK+ +EQ
Sbjct: 62 NEKIEKVTEKQGDF-LEPKEEPKEEPEESLEDIFSSLNDFQEKTDKNAQKDEQKNEQEEQ 120
Query: 184 KDLVKEQKDLVKEQKDLVKEQKDLVKTQKDFIKYVE 219
+ L ++Q+ +K+ ++ + K L + F + +E
Sbjct: 121 RRLREQQR--LKQNQENQEMLKGLQQNLNQFTQKLE 154
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 26.9 bits (58), Expect = 0.91
Identities = 20/75 (26%), Positives = 36/75 (47%), Gaps = 5/75 (6%)
Query: 131 QEKQKTSN-IETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTSNTQKDLVKEQKDLVKE 189
QE + T N +E NN + ++Q T T Q EQ Q+ + TQ+ +EQ +
Sbjct: 346 QESKITDNSVELNNAQEQTAQEQTTQEQTTQEQTTQEQTTQEQT-TQEQTTQEQ---TTQ 401
Query: 190 QKDLVKEQKDLVKEQ 204
++D + +K++
Sbjct: 402 EQDTQENAPTTIKQE 416
Score = 25.4 bits (54), Expect = 2.6
Identities = 19/75 (25%), Positives = 39/75 (51%), Gaps = 7/75 (9%)
Query: 134 QKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTSNTQKDL----VKEQKDLVKE 189
Q++ I T+ +IK+ K + S ++K + ++ ++ ++L +KEQ + E
Sbjct: 2082 QRSVIIPTHTEIKLYDLKNEESKDYELIKVKEVEPLKENASMSEELTHKKLKEQNKQIAE 2141
Query: 190 QKDLVKEQKDLVKEQ 204
Q KE+ D +K+Q
Sbjct: 2142 QN---KEKLDAIKKQ 2153
Score = 23.9 bits (50), Expect = 7.7
Identities = 48/234 (20%), Positives = 92/234 (38%), Gaps = 20/234 (8%)
Query: 130 EQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTSNTQKDLVKEQKDLVKE 189
+QE + SN++ N + + + T E + + ++ + Q + +V Q L+K+
Sbjct: 226 DQEGRLLSNLD-NLESLLNAIRNNTIASEPDFRSRLLEAIQNNDPLKDSIVGAQ--LLKD 282
Query: 190 QKDLVKEQKDLVK-EQKDLVKTQKDFIKYVEQNCQENHNQF------FIEKGGIKAGIGI 242
+ K +K K +++ ++ +K + E N F I+ I +G+
Sbjct: 283 PTTKIFYDKFQLKISPKKVLEILENRLKKSIETTNETLNAFNVLDSQAIDLNAISNSVGL 342
Query: 243 EVEAECK-TPKPAKTNQTPIQPKHLPNSKQPRSQRGSKAQELIAYLQKELEFLPYSQKAI 301
E K T + N Q +++ +Q + QE Q E Q
Sbjct: 343 NPTQESKITDNSVELNNAQEQTAQEQTTQEQTTQEQT-TQEQTTQEQTTQEQTTQEQTTQ 401
Query: 302 AKQVDFYRPSSIAY-------LELDPR-DFKVTEEWQKENLKIRSKAQAKMLEM 347
+ P++I + L+P+ DFK +EE + K R KA K +E+
Sbjct: 402 EQDTQENAPTTIKQETPITPAIPLNPKIDFKPSEEVLIKGAKTRYKANIKAIEL 455
>ref|NP_222912.1| putative [Helicobacter pylori J99]
Length = 916
Score = 26.9 bits (58), Expect = 0.91
Identities = 27/131 (20%), Positives = 64/131 (48%), Gaps = 11/131 (8%)
Query: 70 VLTHIACKKAKELDDK-VQDKSKQAEKENQI----NWWKYSGLTIATSLLLAACSTGDVS 124
+ +H+ A E+ + ++D K+ E+ ++I ++ K++ T ++ ++
Sbjct: 152 IYSHLKELSASEIKPQDMEDILKKLEELDKIFKTTDFTKFTPKTEIKDIIKEIDEKYPIN 211
Query: 125 EQIELEQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTSNTQKDLVKEQK 184
E + Q + SNIE +++IK + E+ K S I ++E + N++++ +
Sbjct: 212 ENFK-RQFNEFESNIEKHDEIKKDFERNKESLIR-----EIENHCKNECNSEEEPEYKIN 265
Query: 185 DLVKEQKDLVK 195
DL+K + + K
Sbjct: 266 DLLKNIQQICK 276
Score = 26.2 bits (56), Expect = 1.6
Identities = 20/99 (20%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
Query: 126 QIELEQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTSNTQKDLVKEQK- 184
+I + E K S I+ + +++ + ++ NI +++QE K KD QK
Sbjct: 451 KIWIPLEFNKRSKIKFDKDLEIYFDSHESFNISKKYLQEIDQESLKKIKQSKDFFSIQKI 510
Query: 185 DLVKEQKDLVKEQKDLVKEQKDLVKTQKDFIKYVEQNCQ 223
+ + D++ Q + + + + F + +E N Q
Sbjct: 511 ESKHDNNDIL--QLEFFENDTSFLFAKGSFAEILEYNMQ 547
>ref|NP_223915.1| putative [Helicobacter pylori J99]
Length = 123
Score = 26.6 bits (57), Expect = 1.2
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 17/120 (14%)
Query: 138 NIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTSNTQKDLVKEQKDLVKEQKDLVKE- 196
N E N I + S ET+ + +E + ++ ++ + + E K +KE+ +KE
Sbjct: 7 NNEKKNTITRRMKIAHNSLPETDRKAHMEPKWRELADIRSKMFAESKKQLKERGIQLKEK 66
Query: 197 ----QKDLVKEQKDLV----KTQKDFIK-YVEQNCQENHNQFFIEKGGIKAGIGIEVEAE 247
Q++ + +K+L+ + Q++ ++ Y Q+N K GIK I++E E
Sbjct: 67 SKAQQQESFEREKELMEEEFQVQRELLEIYYGYPTQKN-------KPGIKYDDTIDIEPE 119
>ref|NP_223889.1| putative [Helicobacter pylori J99]
Length = 219
Score = 26.6 bits (57), Expect = 1.2
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 128 ELEQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTSNT 175
E++QE ++ E + K EQEK+ N N + Q QKT T
Sbjct: 105 EIKQEIKQEIKQEIKQETKQEQEKE---NKPKQNSVSPVQNDQKTPTT 149
Score = 23.9 bits (50), Expect = 7.7
Identities = 13/53 (24%), Positives = 26/53 (48%)
Query: 146 KVEQEKQKTSNIETNNQIKVEQEQQKTSNTQKDLVKEQKDLVKEQKDLVKEQK 198
+++QE ++ E +IK E +Q+ T+++ KE K + +QK
Sbjct: 93 EIKQEIKQEIKQEIKQEIKQEIKQEIKQETKQEQEKENKPKQNSVSPVQNDQK 145
>ref|NP_223632.1| putative [Helicobacter pylori J99]
Length = 411
Score = 26.6 bits (57), Expect = 1.2
Identities = 12/49 (24%), Positives = 25/49 (50%), Gaps = 1/49 (2%)
Query: 171 KTSNTQKDLVKEQKDLVKEQKDLVKEQKDLVKEQKDLVKTQKDFIKYVE 219
K+ KD + K+ VK + K+ + ++ K + ++DF+ Y+E
Sbjct: 155 KSEAPMKDFMSS-KEFVKRYRYTSKDNMERTRQPKSFLNFKRDFLGYIE 202
>ref|NP_224035.1| ISOLEUCYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 920
Score = 26.2 bits (56), Expect = 1.6
Identities = 32/144 (22%), Positives = 55/144 (37%), Gaps = 8/144 (5%)
Query: 82 LDDKVQDKSKQAEKENQI-NWWKYSGLTIATSLLLAACSTGDVSEQIELEQEKQKTSNIE 140
L QD +K EK I + W SG T L G + LE Q +
Sbjct: 520 LPPSYQDNAKHYEKVMHILDVWFDSGSTFKAVLEDYHGEKGQSPSDVVLEGSDQHRGWFQ 579
Query: 141 TNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTSNTQKDLVKEQKDLVKEQKDLVK----- 195
++ I Q + V+++ +K S ++ ++V L K D+V+
Sbjct: 580 SSLLIGCVLNNQAPFKKVITHGFIVDEKGEKMSKSKGNVVSLDNLLKKHGSDVVRLWVAF 639
Query: 196 --EQKDLVKEQKDLVKTQKDFIKY 217
Q DL Q ++T++ + K+
Sbjct: 640 NDYQNDLRVSQTFFIQTEQHYKKF 663
>ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter pylori J99]
Length = 831
Score = 26.2 bits (56), Expect = 1.6
Identities = 15/72 (20%), Positives = 40/72 (54%), Gaps = 2/72 (2%)
Query: 145 IKVEQEKQKTSNIETNNQIKVEQEQQKTSNTQKDLVKEQKDLVKEQKDLVKEQKDLVKEQ 204
I + E+ KT ++ + KV Q+ ++T+ ++ +KEQ ++++ K++ + + +
Sbjct: 195 IDIVIEETKTQKLQKEIKSKVHQKMEQTN--KEYFLKEQLKQIQKELGTDKQRDEDLNQY 252
Query: 205 KDLVKTQKDFIK 216
+++ K F+K
Sbjct: 253 YQKLESIKPFLK 264
Score = 23.9 bits (50), Expect = 7.7
Identities = 9/35 (25%), Positives = 20/35 (56%)
Query: 199 DLVKEQKDLVKTQKDFIKYVEQNCQENHNQFFIEK 233
D+V E+ K QK+ V Q ++ + ++F+++
Sbjct: 196 DIVIEETKTQKLQKEIKSKVHQKMEQTNKEYFLKE 230
>ref|NP_223965.1| putative [Helicobacter pylori J99]
Length = 412
Score = 26.2 bits (56), Expect = 1.6
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 156 NIETNNQIKVEQEQQKTSNTQKDLVKEQKDLVKEQKDLVKEQKDLVKE 203
N E NN EQE S T D+ + D K QKD+ +K +++
Sbjct: 227 NFEFNN----EQELHNISATNYDIAIARLDEEKAQKDITLAKKSFLED 270
>ref|NP_223661.1| putative [Helicobacter pylori J99]
Length = 255
Score = 26.2 bits (56), Expect = 1.6
Identities = 29/122 (23%), Positives = 46/122 (36%), Gaps = 10/122 (8%)
Query: 77 KKAKELDDKVQDKSKQ----AEKENQINWWKYSGLTIATSLLLAACSTGDVSEQIELEQE 132
KK KE+ + KQ A + N+I+ + + + S + S EL Q
Sbjct: 89 KKEKEILQPLNANEKQVLNTALENNEIDARTFKPWDLGSK----EASKENASMSEELTQN 144
Query: 133 KQKTSNIETNN--QIKVEQEKQKTSNIETNNQIKVEQEQQKTSNTQKDLVKEQKDLVKEQ 190
K S+ N+ Q V Q K N ++NN + + D K D+ + Q
Sbjct: 145 NSKLSHFNENSIAQNSVGQNNVKEPNTKSNNSKQNHSLSNSDLTSNTDYNKLVADMFENQ 204
Query: 191 KD 192
D
Sbjct: 205 MD 206
>ref|NP_223561.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 363
Score = 26.2 bits (56), Expect = 1.6
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 123 VSEQIELEQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTSNTQKDLVKE 182
+ IE + QK + + ++Q + +QK + + Q E QK S+ + E
Sbjct: 260 IDSAIEFYKPDQKPLDQKLSDQKPQKLSEQKALEQKISEQKPQEPLDQKLSDQKPQKPLE 319
Query: 183 QKDLVKEQKDLVKEQKDLVKEQKDL 207
QK + EQK L ++ D K QK L
Sbjct: 320 QK--ISEQKPLDQKLSD-QKPQKPL 341
Score = 25.0 bits (53), Expect = 3.5
Identities = 24/110 (21%), Positives = 50/110 (44%), Gaps = 16/110 (14%)
Query: 120 TGDVSEQIELEQEKQKTSNIETNNQIKVEQEKQK----TSNIETNN---------QIKVE 166
TG + Q +++ + ++ N +K+ E+ K T+ +ET+ Q++++
Sbjct: 9 TGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQ 68
Query: 167 QEQQKTSNTQKDLVKEQKDLVKEQKDLVKEQKDLVKEQKDLVKTQKDFIK 216
+E +KT +K K+ + KD KD + ++L K D +K
Sbjct: 69 EENKKTMQEVASAMKSNKETNESLKDFQGALKDTM---ENLNKGMDDSLK 115
>ref|NP_224041.1| putative [Helicobacter pylori J99]
Length = 692
Score = 25.8 bits (55), Expect = 2.0
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 128 ELEQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTSNTQKDLVKEQK 184
E Q+ ++SN ET + K E K + NN K + QKT N K+ + K
Sbjct: 41 ENAQKNAESSNHETLSHHKKEHRPNK----KPNNHHKPKHASQKTRNYAKEELDNNK 93
>ref|NP_224083.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 678
Score = 25.4 bits (54), Expect = 2.6
Identities = 16/65 (24%), Positives = 30/65 (45%)
Query: 178 DLVKEQKDLVKEQKDLVKEQKDLVKEQKDLVKTQKDFIKYVEQNCQENHNQFFIEKGGIK 237
D +K L +DL + ++ +E +D + + I E+N HN+ ++ I
Sbjct: 185 DFIKRVDTLSLSDEDLERIREKKNQEIEDCLMQLNNNIYDKEKNFLSEHNRVYLVIASII 244
Query: 238 AGIGI 242
A +GI
Sbjct: 245 ANLGI 249
>ref|NP_224048.1| putative [Helicobacter pylori J99]
Length = 187
Score = 25.4 bits (54), Expect = 2.6
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 48 KIAKKVRGLVKKHPKKSSAALVVLTHIACKKAKELDDKVQDKSKQ 92
+IA+K+R ++KKH + ++L H K+A K Q K+ Q
Sbjct: 37 RIAQKIRNILKKHGSRKD---IILKHNEIKEAFFSPFKPQLKTVQ 78
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 25.4 bits (54), Expect = 2.6
Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 6/125 (4%)
Query: 105 SGLTIATSLLLAACSTG--DVSEQIELEQEKQKTSNIET-NNQIKVEQ-EKQKTSNIETN 160
SG T +S L G D ++ ++ IE N Q K EQ + I T
Sbjct: 53 SGKTTTSSFLKNLAENGIEDKFANSKIAWYNNESLKIEVYNKQFKEEQLRNSQVKGIFTL 112
Query: 161 NQIKVEQEQQKTSNTQKDLVKEQKDLVKEQKDLVKEQKDLVKEQKDLVKT-QKDFIKYVE 219
+ K + +K + ++ + KE + +K + L + KE+KD + K+ K E
Sbjct: 113 GK-KTNENLEKIESKKESINKENEKKIKNEASLQVLTQKKEKEEKDFTDSCWKNLYKKNE 171
Query: 220 QNCQE 224
+ +E
Sbjct: 172 EEFKE 176
Score = 24.6 bits (52), Expect = 4.5
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Query: 125 EQIELEQEKQ--KTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTSNTQKDLVKE 182
E I E EK+ ++++ Q K ++EK T + N K E+E ++ K K
Sbjct: 128 ESINKENEKKIKNEASLQVLTQKKEKEEKDFTDSCWKNLYKKNEEEFKEILEGFKRKEKF 187
Query: 183 QKDLVKEQKDLVKEQKDLVKEQKDLVKTQKDFIK 216
+ ++KE ++ Q ++V +K K + F K
Sbjct: 188 KGKILKEFENDKHNQSEIVGLEKLKEKIEIVFSK 221
>ref|NP_223449.1| TRIGGER FACTOR [Helicobacter pylori J99]
Length = 451
Score = 25.4 bits (54), Expect = 2.6
Identities = 19/67 (28%), Positives = 29/67 (42%), Gaps = 12/67 (17%)
Query: 133 KQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTSNTQKDLVKEQKDLVKEQKD 192
K S ++T Q ++EQ+ Q+ E Q+ N K+L E KDL+
Sbjct: 48 KVPLSLVKTRYQAQIEQDAQE------------EMIQEVLKNALKELGVETKDLIGSPNF 95
Query: 193 LVKEQKD 199
E+KD
Sbjct: 96 TKFEKKD 102
>ref|NP_223283.1| DNA MISMATCH REPAIR PROTEIN [Helicobacter pylori J99]
Length = 762
Score = 25.4 bits (54), Expect = 2.6
Identities = 13/56 (23%), Positives = 31/56 (55%)
Query: 150 EKQKTSNIETNNQIKVEQEQQKTSNTQKDLVKEQKDLVKEQKDLVKEQKDLVKEQK 205
E ++ N+ N +E+E ++ + ++ +KEQ+DL +++QK++ +K
Sbjct: 511 EDKEKLNVLIENSSTLERELKQKNEHLENALKEQEDLKNAWLLEMEKQKEIFHHKK 566
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 25.0 bits (53), Expect = 3.5
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 159 TNNQIKVEQEQQKTSNTQKDLVKEQKDLVKEQKDLVKEQK 198
T+ + V +E + + K L++ KD+ KE+K +K+ K
Sbjct: 748 THYLLMVNREPNENNPVLKRLIQAVKDMQKEKKKGIKKPK 787
Score = 24.3 bits (51), Expect = 5.9
Identities = 39/184 (21%), Positives = 67/184 (36%), Gaps = 22/184 (11%)
Query: 70 VLTHIACKKAKELDDKVQDKSKQAEKENQINWWKYSGLTIATSLLLAACSTGDVSEQIEL 129
V+ A K EL K KS K+N N +K T+ + D L
Sbjct: 219 VVVEQAINKKNELVLKTMYKSNGDYKDN--NAYKKFSSTLTLN--------ADAKVNHGL 268
Query: 130 EQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTSNTQKDLVKEQKDLVKE 189
T N+ E + T N+ + +N +K E + L E
Sbjct: 269 SSHSGATENLTQKPLTSQEDLLKDTENLNETTPKPTHLSPLELANAEKLAKLESEQLQSE 328
Query: 190 QKDLVKEQKDLVKEQKDLVKTQKDFIKYVEQNCQENHNQFFIE-KGGIKAGIGIEVEAEC 248
Q+ L ++++L ++K+ +K + + E N IE + I+ G I + +
Sbjct: 329 QEFLKAKEQEL--KRKEALKKKLE---------HERGNAGHIESQTKIEVGEDIPTQVQA 377
Query: 249 KTPK 252
+ PK
Sbjct: 378 QIPK 381
>ref|NP_223534.1| putative [Helicobacter pylori J99]
Length = 614
Score = 25.0 bits (53), Expect = 3.5
Identities = 28/128 (21%), Positives = 53/128 (40%), Gaps = 12/128 (9%)
Query: 264 KHLPNSKQPRSQRGSKAQELIAYLQKE----------LEFLPYSQKAIAKQVDFYRPSSI 313
+ L N+KQ + G K++++IA Q +E L + + I + +
Sbjct: 457 EELKNAKQKLNALGVKSKKIIAQHQSLNHLVKNNQVIMEKLKNATEEIKRSLMQQESVKD 516
Query: 314 AYLEL--DPRDFKVTEEWQKENLKIRSKAQAKMLEMRNPQAHLSNSQSLLFVQKIFADVN 371
AY E + K+ + E KI ++ AK++ + N H S + F Q+ +
Sbjct: 517 AYSEFVFALKRLKILKAQMLELQKINNECYAKLISIENSFQHASITTKNPFKQENIVIYH 576
Query: 372 KEIEAVAN 379
+ V+N
Sbjct: 577 RNYPKVSN 584
>ref|NP_223205.1| cag island protein [Helicobacter pylori J99]
Length = 237
Score = 25.0 bits (53), Expect = 3.5
Identities = 17/70 (24%), Positives = 35/70 (49%), Gaps = 6/70 (8%)
Query: 162 QIKVEQEQQKTSNTQKDLVKEQKDLVKEQKDLVKEQKDLVKEQKDLVKTQKDFIKYVEQN 221
++K+EQE+Q + +K + + L+ + LV+ K+ K+FIK +++
Sbjct: 142 KLKIEQEKQNIRERLETSLKAYQSNIGGTASLITASQTLVESLKN-----KNFIKGIKK- 195
Query: 222 CQENHNQFFI 231
HN+ F+
Sbjct: 196 LMLAHNKVFL 205
>ref|NP_223158.1| putative [Helicobacter pylori J99]
Length = 912
Score = 25.0 bits (53), Expect = 3.5
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 119 STGDVSEQIELEQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQE 168
S VSEQ E + K++ + + + K+E E+ NIE+ +I+V ++
Sbjct: 242 SEAKVSEQ-EFLKAKEQEAKRKVALKKKLEHERGNAGNIESQTKIEVGED 290
>ref|NP_222949.1| NEUTROPHIL-ACTIVATING PROTEIN A [Helicobacter pylori J99]
Length = 144
Score = 25.0 bits (53), Expect = 3.5
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 167 QEQQKTSNTQKDLVKEQKDLVKEQKDLVKEQKDL 200
+E+ KTS KD+ KE ++++ K L KE K+L
Sbjct: 79 KEETKTSFHSKDIFKE---ILEDYKHLEKEFKEL 109
>ref|NP_224131.1| putative [Helicobacter pylori J99]
Length = 115
Score = 24.6 bits (52), Expect = 4.5
Identities = 15/70 (21%), Positives = 31/70 (43%), Gaps = 2/70 (2%)
Query: 131 QEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTSNTQKDLVKEQK--DLVK 188
+++ K S+ N K Q Q + +I+ E+E +K + DL+ + D +
Sbjct: 22 KDEPKKSSQSHQNNTKTTQNNQINQPNKDIKKIEHEEEDEKVTKEVNDLINNENKIDEIN 81
Query: 189 EQKDLVKEQK 198
+++ QK
Sbjct: 82 NEENADPSQK 91
>ref|NP_223504.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 528
Score = 24.6 bits (52), Expect = 4.5
Identities = 17/57 (29%), Positives = 27/57 (46%), Gaps = 2/57 (3%)
Query: 147 VEQEKQKTSNIETNNQIKVEQEQQKTSNTQKDLVKEQKDLVKEQKDLVKEQKDLVKE 203
+E+ ++ N+ N VEQE K K L E +VK+Q L + ++KE
Sbjct: 471 IEKIQENDYNLSVNRY--VEQEDTKEIIDIKALNGEISQIVKKQSVLRNSLESIIKE 525
>ref|NP_224125.1| N-UTILIZATION SUBSTANCE PROTEIN A [Helicobacter pylori J99]
Length = 395
Score = 24.3 bits (51), Expect = 5.9
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 1 MESVKTGKTNKVGKNTEMANTKANKEXHFK 30
+ES+K G N++ K+ + KA ++ HF+
Sbjct: 101 LESMKQGAINRLFKDLQYQLEKALEDSHFE 130
>ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 849
Score = 24.3 bits (51), Expect = 5.9
Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 14/112 (12%)
Query: 118 CSTGDVSEQIELEQEKQKTSNIETNNQIKVEQEKQKTSN------IETNNQIKVEQ---- 167
C T +V + L K NIE+ +E KQ + +E + +EQ
Sbjct: 415 CITHEVGAEEILLGMLLKMLNIESTALKSLEDSKQSIVDEAALKALEEERKKALEQAEQG 474
Query: 168 ----EQQKTSNTQKDLVKEQKDLVKEQKDLVKEQKDLVKEQKDLVKTQKDFI 215
E ++ + K+ +E K K+ E K VKE+K V T+ ++
Sbjct: 475 CSIGENKEEAVASKENKEENKTEAAAPKENQTENKTEVKEEKIEVPTKTTYL 526
>ref|NP_223770.1| putative [Helicobacter pylori J99]
Length = 331
Score = 24.3 bits (51), Expect = 5.9
Identities = 22/76 (28%), Positives = 36/76 (46%), Gaps = 8/76 (10%)
Query: 122 DVSEQIELEQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTSNTQ-KDLV 180
D+ QI L Q+ K + K E+ + ++ N +K E + + TQ K V
Sbjct: 144 DLVSQIALIQKALK------EQEEKAEKPLKSSTPANKNPPLKAETPKNQEKKTQEKAKV 197
Query: 181 KEQKDLVKEQKDLVKE 196
+ KDL K QK++ +E
Sbjct: 198 EFDKDLSK-QKEIFQE 212
>ref|NP_223721.1| putative [Helicobacter pylori J99]
Length = 223
Score = 24.3 bits (51), Expect = 5.9
Identities = 18/49 (36%), Positives = 27/49 (54%), Gaps = 8/49 (16%)
Query: 48 KIAKKVRGLVKKHPKKSSAALVVLTHIACKKAKELDDKVQDKSKQAEKE 96
K K++R +K+H SA V +++ +KE + KV DK K EKE
Sbjct: 100 KNVKELRNYIKEH---FSAYYVNISY-----SKEHNFKVGDKDKNDEKE 140
>ref|NP_223138.1| putative [Helicobacter pylori J99]
Length = 495
Score = 24.3 bits (51), Expect = 5.9
Identities = 9/21 (42%), Positives = 16/21 (75%)
Query: 198 KDLVKEQKDLVKTQKDFIKYV 218
KDL+ ++K+++K +DF K V
Sbjct: 90 KDLMIDEKEVLKNYEDFFKQV 110
>ref|NP_224176.1| TRANSCRIPTION-REPAIR COUPLING FACTOR [Helicobacter pylori J99]
Length = 1001
Score = 23.9 bits (50), Expect = 7.7
Identities = 10/33 (30%), Positives = 22/33 (66%)
Query: 334 LKIRSKAQAKMLEMRNPQAHLSNSQSLLFVQKI 366
LK+++K +AK+LE+ L+ ++L+ +K+
Sbjct: 435 LKLKAKVRAKLLEIAGKIIELAAERNLILGKKM 467
>ref|NP_223759.1| putative [Helicobacter pylori J99]
Length = 267
Score = 23.9 bits (50), Expect = 7.7
Identities = 15/46 (32%), Positives = 20/46 (42%), Gaps = 1/46 (2%)
Query: 4 VKTGKTNKVGKNTEMANTKANKEXHFKQXSTITNIIRSXXGIFTKI 49
+ +T + TE A T AN E Q ITNI + T+I
Sbjct: 183 ISNNQTQAITNITE-AKTNANNEISNNQTQAITNINEAKESATTQI 227
>ref|NP_223180.1| putative [Helicobacter pylori J99]
Length = 706
Score = 23.9 bits (50), Expect = 7.7
Identities = 17/74 (22%), Positives = 34/74 (44%), Gaps = 3/74 (4%)
Query: 158 ETNNQIKVEQEQQKTSNTQKDLVKEQKDLVKEQKDLVKEQKDLVKEQKDLVKTQKDFIKY 217
ET + K ++E+++ ++ KE+ L KE+K ++L + IK
Sbjct: 551 ETLEEYKPKKEKKEKKEKKE---KEEYKLKKEKKVYDLSSYKFSPHSRELFDILRKEIKT 607
Query: 218 VEQNCQENHNQFFI 231
+++ EN N +I
Sbjct: 608 LDERVTENFNSKYI 621
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.308 0.124 0.330
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 405,651
Number of Sequences: 1491
Number of extensions: 19518
Number of successful extensions: 255
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 91
Number of HSP's gapped (non-prelim): 109
length of query: 395
length of database: 494,079
effective HSP length: 80
effective length of query: 315
effective length of database: 374,799
effective search space: 118061685
effective search space used: 118061685
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 50 (23.9 bits)