BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645787|ref|NP_207964.1| hypothetical protein
[Helicobacter pylori 26695]
(183 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223817.1| putative [Helicobacter pylori J99] 343 1e-96
ref|NP_222759.1| phosphomannose isomerase/GDP-mannose pyrop... 27 0.33
ref|NP_223479.1| HOMOSERINE DEHYDROGENASE [Helicobacter pyl... 26 0.74
ref|NP_223648.1| topoisomerase I [Helicobacter pylori J99] 23 3.7
ref|NP_223646.1| putative [Helicobacter pylori J99] 23 3.7
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 23 4.8
ref|NP_223889.1| putative [Helicobacter pylori J99] 23 6.2
ref|NP_223326.1| CHORISMATE SYNTHASE [Helicobacter pylori J99] 23 6.2
ref|NP_223322.1| putative [Helicobacter pylori J99] 23 6.2
ref|NP_222781.1| putative [Helicobacter pylori J99] 23 6.2
ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobac... 22 8.2
ref|NP_223278.1| ASPARTYL-TRNA SYNTHETASE [Helicobacter pyl... 22 8.2
ref|NP_222763.1| putative TRANSCRIPTIONAL REGULATOR [Helico... 22 8.2
>ref|NP_223817.1| putative [Helicobacter pylori J99]
Length = 185
Score = 343 bits (881), Expect = 1e-96
Identities = 171/185 (92%), Positives = 179/185 (96%), Gaps = 2/185 (1%)
Query: 1 MSYFYKHCLKFSLVGLLGL--LSVQLDARSFVDGDLDIQKFSYEDSLLKKGDPNGVHKVQ 58
M++FYK CL+FSLVGLLG+ LSVQLDARSF+DGDLDIQKFSYEDSLLKKGDPNGVHKVQ
Sbjct: 1 MNHFYKRCLRFSLVGLLGVGFLSVQLDARSFIDGDLDIQKFSYEDSLLKKGDPNGVHKVQ 60
Query: 59 VRDYKGKMQEAEIHSEIRIALKPGVKKEVKKGKIYSAQINDGMCYAFRMLQTGDNTTGLD 118
VRDYKGKMQEAEIHSEIRIALKPGVKKEVKKGKIYSAQINDGMCYAFRMLQTG+NTT LD
Sbjct: 61 VRDYKGKMQEAEIHSEIRIALKPGVKKEVKKGKIYSAQINDGMCYAFRMLQTGNNTTSLD 120
Query: 119 SKEFPKQSREKKGRVITLIGKGEVPYLILETDCQVGDIAKISLVGNFDGTGFLTEYKFKD 178
SKEFPKQSREKKG+VITLIG+ EVPYLILETDCQVGDIAKISLVGNFDGTGFLTEYKFK
Sbjct: 121 SKEFPKQSREKKGQVITLIGQNEVPYLILETDCQVGDIAKISLVGNFDGTGFLTEYKFKG 180
Query: 179 AKPIY 183
AKPIY
Sbjct: 181 AKPIY 185
>ref|NP_222759.1| phosphomannose isomerase/GDP-mannose pyrophosphorylase
[Helicobacter pylori J99]
Length = 470
Score = 26.9 bits (58), Expect = 0.33
Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 32/127 (25%)
Query: 55 HKVQVRDYKGKMQEAEIHSEIRIALKPGVKKEVKKGKIYSAQINDGMCYAFRMLQTGDNT 114
HK + +D K + E E H++ + V + ++ +++ CY ++L+ N
Sbjct: 329 HKDKAKDLKALVSEIETHNQELLQTHTKVYRPWGSYEV----LHESGCYKVKILEVKPNA 384
Query: 115 -----------------TGLDSKEFPKQSREKKGRVITLIGK---------GEVPYLILE 148
+G+ S E QS E + T I K G++P +I+E
Sbjct: 385 RLSLQKHFHRSEHWVVISGMASVELDHQSFELQANESTYIPKNTLHRLANYGKIPLIIIE 444
Query: 149 TDCQVGD 155
QVG+
Sbjct: 445 V--QVGE 449
>ref|NP_223479.1| HOMOSERINE DEHYDROGENASE [Helicobacter pylori J99]
Length = 421
Score = 25.8 bits (55), Expect = 0.74
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 20/72 (27%)
Query: 75 IRIALKPGVKKEVKKGKIYSAQINDGMCYAFRMLQTGDNTTGLDSKEFPKQSREKKGRVI 134
+ I +K V ++VKK K Y+ +I+D L++ G+D V+
Sbjct: 36 VEIKIKKAVVRDVKKHKGYAFEISDD-------LESVIEDKGIDI-------------VV 75
Query: 135 TLIGKGEVPYLI 146
L+G E PYL+
Sbjct: 76 ELMGGVEAPYLL 87
>ref|NP_223648.1| topoisomerase I [Helicobacter pylori J99]
Length = 686
Score = 23.5 bits (49), Expect = 3.7
Identities = 15/41 (36%), Positives = 24/41 (57%), Gaps = 3/41 (7%)
Query: 60 RDYK-GKMQEAEIHSEIRIALKPGVKKEVKKGKIYSAQIND 99
R+YK GK +AE H IRI P +++ + +Y+A I +
Sbjct: 325 REYKAGKQSQAEAHEAIRIT-HPHTTEDL-ESIVYNANITN 363
>ref|NP_223646.1| putative [Helicobacter pylori J99]
Length = 150
Score = 23.5 bits (49), Expect = 3.7
Identities = 10/31 (32%), Positives = 18/31 (57%)
Query: 60 RDYKGKMQEAEIHSEIRIALKPGVKKEVKKG 90
R+ +G + H EI A + ++KE++KG
Sbjct: 95 REEQGVKGNTKSHDEIEPATEQVIEKEIEKG 125
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 23.1 bits (48), Expect = 4.8
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 41 YEDSLLKKGDPNGVHKVQVRDYKGKMQEAEIHSEIRIALK-PGVKKEVKK 89
Y+D + + DPN ++ + D K+Q ++ + + LK P K E++K
Sbjct: 678 YKDLVAQYKDPNPLYPLNKADLINKIQ--DLKNTFSLTLKDPKTKAELEK 725
>ref|NP_223889.1| putative [Helicobacter pylori J99]
Length = 219
Score = 22.7 bits (47), Expect = 6.2
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 67 QEAEIHSEIRIALKPGVKKEVKK 89
Q+ EI EI+ +K +K+E+K+
Sbjct: 90 QKQEIKQEIKQEIKQEIKQEIKQ 112
>ref|NP_223326.1| CHORISMATE SYNTHASE [Helicobacter pylori J99]
Length = 365
Score = 22.7 bits (47), Expect = 6.2
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 55 HKVQVRDYKGKMQEAEIHSEIRIA 78
HK +RD++G + + S IR+A
Sbjct: 111 HKYGIRDFRGGGRSSARESAIRVA 134
>ref|NP_223322.1| putative [Helicobacter pylori J99]
Length = 413
Score = 22.7 bits (47), Expect = 6.2
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 44 SLLKKGDPNGVHKVQVRDYKGKMQEAEIHSEIRIALKPGVKKEVKKGKIY 93
SLL G P ++++Q K K+ +A+ R+ + +E+++ KI+
Sbjct: 162 SLLVNGSPITLYQIQEEQEKSKVSKAQARD--RLIAERIKNQEIERLKIH 209
>ref|NP_222781.1| putative [Helicobacter pylori J99]
Length = 139
Score = 22.7 bits (47), Expect = 6.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 2 SYFYKHCLKFSLVGLL 17
SY +KH L F+L LL
Sbjct: 61 SYMFKHVLNFNLESLL 76
>ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobacter pylori J99]
Length = 946
Score = 22.3 bits (46), Expect = 8.2
Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 19/104 (18%)
Query: 38 KFSYEDSLLKKGDPNGVHKVQVRD-----------YKGKMQEAEIHSEIRIALKPGVKKE 86
+F Y + G+PN H Q+ + Y+ K +E R K K+
Sbjct: 649 QFPYVIVCERLGNPNSSHANQLLEEYDGTELARLYYRMKNREVVDKDYARALDKEEAAKD 708
Query: 87 VKKGKIYSAQINDGMCYAFRMLQTGDNTTGLDSKEFPKQSREKK 130
++ +Y AF + G D KE K+S+ KK
Sbjct: 709 HEEINVYYV--------AFTRAELGLIVVAKDKKESKKESKNKK 744
>ref|NP_223278.1| ASPARTYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 579
Score = 22.3 bits (46), Expect = 8.2
Identities = 9/27 (33%), Positives = 16/27 (58%)
Query: 130 KGRVITLIGKGEVPYLILETDCQVGDI 156
KG ++ + + + ++ TD QVGDI
Sbjct: 362 KGPLVKFLSEKGLKNILERTDAQVGDI 388
>ref|NP_222763.1| putative TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99]
Length = 757
Score = 22.3 bits (46), Expect = 8.2
Identities = 10/29 (34%), Positives = 14/29 (47%)
Query: 138 GKGEVPYLILETDCQVGDIAKISLVGNFD 166
G G I +C VGD+ +I V F+
Sbjct: 515 GSGAYENKIYGAECFVGDLERIEEVARFE 543
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.319 0.140 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 195,229
Number of Sequences: 1491
Number of extensions: 8643
Number of successful extensions: 32
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 15
length of query: 183
length of database: 494,079
effective HSP length: 72
effective length of query: 111
effective length of database: 386,727
effective search space: 42926697
effective search space used: 42926697
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)