BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645791|ref|NP_207968.1| outer membrane protein
(omp27) [Helicobacter pylori 26695]
(641 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223820.1| putative Outer membrane function [Helicoba... 1122 0.0
ref|NP_222729.1| putative Outer membrane protein [Helicobac... 573 e-165
ref|NP_223979.1| putative Outer membrane protein [Helicobac... 539 e-155
ref|NP_222933.1| putative Outer membrane protein [Helicobac... 539 e-155
ref|NP_222743.1| putative Outer membrane protein [Helicobac... 520 e-149
ref|NP_223882.1| outer membrane protein - adhesin [Helicoba... 517 e-148
ref|NP_223551.1| outer membrane protein - adhesin [Helicoba... 513 e-147
ref|NP_223377.1| putative Outer membrane protein [Helicobac... 414 e-117
ref|NP_223380.1| putative Outer membrane protein [Helicobac... 403 e-114
ref|NP_222935.1| Outer membrane protein/porin [Helicobacter... 363 e-102
ref|NP_223566.1| Outer membrane protein/porin [Helicobacter... 164 6e-42
ref|NP_223567.1| Outer membrane protein/porin [Helicobacter... 151 6e-38
ref|NP_222959.1| putative Outer membrane protein [Helicobac... 148 5e-37
ref|NP_223801.1| putative Outer membrane protein [Helicobac... 145 3e-36
ref|NP_223332.1| putative Outer membrane protein [Helicobac... 131 6e-32
ref|NP_223800.1| putative Outer membrane protein [Helicobac... 129 2e-31
ref|NP_222958.1| putative Outer membrane protein [Helicobac... 120 8e-29
ref|NP_223027.1| putative Outer membrane protein [Helicobac... 108 5e-25
ref|NP_223575.1| putative Outer membrane protein [Helicobac... 105 3e-24
ref|NP_223147.1| putative Outer membrane protein [Helicobac... 105 3e-24
ref|NP_222838.1| putative Outer membrane protein [Helicobac... 105 4e-24
ref|NP_224080.1| putative Outer membrane protein [Helicobac... 105 5e-24
ref|NP_224112.1| putative Outer membrane protein [Helicobac... 102 2e-23
ref|NP_222795.1| putative Outer membrane protein [Helicobac... 97 1e-21
ref|NP_223363.1| Outer membrane protein/porin [Helicobacter... 96 3e-21
ref|NP_224150.1| putative OUTER MEMBRANE PROTEIN [Helicobac... 90 2e-19
ref|NP_223299.1| putative Outer membrane protein [Helicobac... 76 2e-15
ref|NP_223757.1| putative Outer membrane protein [Helicobac... 72 3e-14
ref|NP_223142.1| putative Outer membrane protein [Helicobac... 66 2e-12
ref|NP_223725.1| putative outer membrane protein [Helicobac... 59 5e-10
ref|NP_224064.1| putative Outer membrane protein [Helicobac... 52 6e-08
ref|NP_223450.1| putative Outer membrane protein [Helicobac... 48 7e-07
ref|NP_223588.1| putative outer membrane protein [Helicobac... 46 3e-06
ref|NP_223367.1| putative Outer membrane protein [Helicobac... 46 3e-06
ref|NP_224132.1| putative [Helicobacter pylori J99] 42 5e-05
ref|NP_223078.1| putative Outer membrane protein [Helicobac... 39 3e-04
ref|NP_223759.1| putative [Helicobacter pylori J99] 36 0.003
ref|NP_223662.1| putative [Helicobacter pylori J99] 34 0.010
ref|NP_223199.1| cag island protein [Helicobacter pylori J99] 33 0.017
ref|NP_222995.1| putative vacuolating cytotoxin (VacA) para... 32 0.038
ref|NP_223574.1| putative vacuolating cytotoxin (VacA) para... 32 0.064
ref|NP_223274.1| putative vacuolating cytotoxin (VacA) para... 31 0.084
ref|NP_223787.1| putative [Helicobacter pylori J99] 29 0.32
ref|NP_223999.1| putative [Helicobacter pylori J99] 28 0.71
ref|NP_224083.1| putative TYPE II DNA MODIFICATION ENZYME (... 28 0.93
ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATE... 27 1.6
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 27 1.6
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 27 2.1
ref|NP_223994.1| putative [Helicobacter pylori J99] 26 3.5
ref|NP_223331.1| putative [Helicobacter pylori J99] 26 3.5
ref|NP_223090.1| putative [Helicobacter pylori J99] 26 3.5
ref|NP_224013.1| putative ENDONUCLEASE [Helicobacter pylori... 25 4.6
ref|NP_223945.1| 50S RIBOSOMAL PROTEIN L5 [Helicobacter pyl... 25 4.6
ref|NP_223643.1| putative [Helicobacter pylori J99] 25 4.6
ref|NP_222816.1| methyl-accepting chemotaxis protein (MCP) ... 25 4.6
ref|NP_224093.1| putative [Helicobacter pylori J99] 25 7.9
ref|NP_223829.1| CARBONIC ANHYDRASE [Helicobacter pylori J99] 25 7.9
ref|NP_223273.1| putative [Helicobacter pylori J99] 25 7.9
ref|NP_223070.1| putative [Helicobacter pylori J99] 25 7.9
>ref|NP_223820.1| putative Outer membrane function [Helicobacter pylori J99]
Length = 643
Score = 1122 bits (2901), Expect = 0.0
Identities = 565/645 (87%), Positives = 595/645 (91%), Gaps = 6/645 (0%)
Query: 1 MKKTKKTILLSLTLAASLLHAEDNGVFLSVGYQIGEAVQKVKNADKVQKLSDTYEQLSRL 60
MKKTKKTILLSLTLAASLLHAEDNGVFLSVGYQIGEAVQKVKNADKVQKLSD YEQLS+L
Sbjct: 1 MKKTKKTILLSLTLAASLLHAEDNGVFLSVGYQIGEAVQKVKNADKVQKLSDVYEQLSKL 60
Query: 61 LTNDNGTNSKTSAQAINQAVNNLNERAKTLAGGTTNSPAYQATLLALRSVLGLWNSMGYA 120
L NDNGT+SKTSAQAINQAVNNLNE AKTLAGGTTNSPAYQATLLALRS LGLWNSMGYA
Sbjct: 61 LANDNGTSSKTSAQAINQAVNNLNESAKTLAGGTTNSPAYQATLLALRSALGLWNSMGYA 120
Query: 121 VICGGYTKSPGENNQKDFHYTDENGNGTTINCGGSTNSNGTHSSSGTNTLKADKNVSLSI 180
V+CGGY K PGENNQK+FHYTDENGNGTTINCGGSTNSNGTHS +GTNTLKADKNVSLSI
Sbjct: 121 VVCGGYIKKPGENNQKNFHYTDENGNGTTINCGGSTNSNGTHSPNGTNTLKADKNVSLSI 180
Query: 181 EQYEKIHEAYQILSKALKQAGLAPLNSKGEKLEAHVTTSKPE---NNSQTKTTTSVIDTT 237
EQYEKIHEAYQILSKALKQAGLAPLNSKGEKLEAHVTTSK + ++ QT TTTSVIDTT
Sbjct: 181 EQYEKIHEAYQILSKALKQAGLAPLNSKGEKLEAHVTTSKDQQGTSSDQTTTTTSVIDTT 240
Query: 238 NDAQNLLTQAQTIVNTLKDYCPMLIAKSSSESSGAATTNAPSWQTAGGGKNSCATFGAEF 297
NDAQNLLTQAQTIVNTLKDYCPMLIAKSSS + G N PSWQTAGGGKNSCATFGAEF
Sbjct: 241 NDAQNLLTQAQTIVNTLKDYCPMLIAKSSS-NGGTNGANTPSWQTAGGGKNSCATFGAEF 299
Query: 298 SAASDMINNAQKIVQETQQLSANQPKNITQPHNLNLNTPSSLTALAQKMLKNAQSQAEIL 357
SA SDMI+NAQKIVQETQQL+ANQPKNITQP+N NLN+P SLTALAQ MLKNAQSQ EIL
Sbjct: 300 SAISDMISNAQKIVQETQQLNANQPKNITQPNNFNLNSPGSLTALAQSMLKNAQSQTEIL 359
Query: 358 KLANQVESDFNKLSSGHLKDYIGKCDASAISSANMTMQNQKNNWGNGCAGVEETLSSLKT 417
KLANQV SDF+KLSSG+LKDYIGKCD S +SS+NMT QN WG GCAGVEETL+SLK
Sbjct: 360 KLANQVASDFDKLSSGYLKDYIGKCDVSGVSSSNMTPQNMNTTWGKGCAGVEETLTSLKA 419
Query: 418 SAADFNNQ-TPQINQAQNLANTLIQELGNNPFRNMGMIASSTTNNGALNGLGVQVGYKQF 476
S DFNNQ TPQ++QAQ LANTL QELGNNPF+ +G+I S TNNGA+NGLGVQ GYKQF
Sbjct: 420 STTDFNNQTTPQLDQAQTLANTLTQELGNNPFKRVGIIGSQ-TNNGAMNGLGVQAGYKQF 478
Query: 477 FGEKKRWGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGSDLLFNFINDKNTNFLGKNNK 536
FG+K+RWGLRYYGFFDYNH YIKS+FFNS+SDV TYGVGSDLLFNFINDKNTNFLGKNNK
Sbjct: 479 FGQKRRWGLRYYGFFDYNHTYIKSSFFNSSSDVLTYGVGSDLLFNFINDKNTNFLGKNNK 538
Query: 537 ISVGFFGGIALAGTSWLNSQFVNLKTISNVYSAKVNTANFQFLFNLGLRTNLARPKKKDS 596
ISVG FGGIALAGTSWLNSQFVNLKTISNVYSAKVNTANFQFLFNLGLRTNLARPKKKDS
Sbjct: 539 ISVGLFGGIALAGTSWLNSQFVNLKTISNVYSAKVNTANFQFLFNLGLRTNLARPKKKDS 598
Query: 597 HHAAQHGMELGVKIPTINTNYYSFLDTKLEYRRLYSVYLNYVFAY 641
H+AQHGMELGVKIPTINTNYYS+L TKLEYRRLYSVYLNYVFAY
Sbjct: 599 DHSAQHGMELGVKIPTINTNYYSYLGTKLEYRRLYSVYLNYVFAY 643
>ref|NP_222729.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 668
Score = 573 bits (1478), Expect = e-165
Identities = 346/707 (48%), Positives = 439/707 (61%), Gaps = 110/707 (15%)
Query: 5 KKTILLSLTLAASLLHAEDNGVFLSVGYQIGEAVQKVKNADKVQKLSDTYEQLSRLLTND 64
KKT+LLSL+ A+SLL+AEDNG F+S GYQIGEA Q VKN +++KLSDTYE LS LLTN
Sbjct: 2 KKTLLLSLS-ASSLLNAEDNGFFISAGYQIGEAAQMVKNTGELKKLSDTYENLSNLLTNF 60
Query: 65 NGTN----SKTSAQAINQAVNNLNERAKTLAGGTTNSPAYQATLLALRSVLGLWNSMGYA 120
N N + +S IN A++NL + L G TNSPAYQA LAL + +GLWN + Y
Sbjct: 61 NNLNQAVTNASSPSEINAAIDNLKANTQGLIGEKTNSPAYQAVYLALNAAVGLWNVIAYN 120
Query: 121 VICGGYTKSPGENNQKDFHYTDENG-NGTTINCGGSTNSNGTHSSSGTNTLKADKNVSLS 179
V CG PG + Q+ + + G N ++INC + +NG LS
Sbjct: 121 VQCG-----PGNSGQQSVTFEGQPGHNSSSINCNLTGYNNGVSGP-------------LS 162
Query: 180 IEQYEKIHEAYQILSKALKQ-AGLAPLNSKGEKLEAHVTT-SKPENNSQTKTTTSVIDTT 237
IE ++K+++AYQ + +ALKQ +G L+S G+++ +TT + N S+T TTT+ TT
Sbjct: 163 IENFKKLNQAYQTIQQALKQDSGFPVLDSAGKQVTITITTQTNGANKSETTTTTT---TT 219
Query: 238 NDAQNLLTQAQTIVNTLKDYCPMLIAKSSSESSGAATTNAPSWQTAGGGKNSCATFGAEF 297
NDAQ LL +A +++ L CP + + ++ GA TAG N C F EF
Sbjct: 220 NDAQTLLQEASKMISVLTTNCPW-VNHNQGQNGGAPW----GLDTAG---NVCQVFATEF 271
Query: 298 SAASDMINNAQKIVQETQQLSANQPKNITQPHNLNLNTPSSLTALAQKMLKNAQSQAEIL 357
SA + MI NAQ+IV + Q L NQ N P + N T S+ A AQ ML +AQ+QA+IL
Sbjct: 272 SAVTSMIKNAQEIVTQAQSL--NQQNNQNAPQDFNPYT-SADRAFAQNMLNHAQAQAKIL 328
Query: 358 KLANQVESDFNKLSSGHLKDYIGKCDASAISSANMTMQNQKNNWGNGCAGVEE------- 410
+LA+Q++ D N + S + +Y+ C + + + N N WG GCA VEE
Sbjct: 329 ELADQMKKDLNTIPSQFITNYLAACHNGGGTLPDAGVTN--NTWGAGCAYVEETITALNN 386
Query: 411 --------------------TLSSLKTSAADFNN----------QTPQ-------INQAQ 433
T+ + S ++ NN TP I+Q+
Sbjct: 387 SLAHFGTQAEQIKQSELLARTILDFRGSLSNLNNTYNSITTTASNTPNSPFLKNLISQST 446
Query: 434 NLAN-------------------TLIQELGNNPFRNMGMIASSTTNNGALNGLGVQVGYK 474
N N + QELG+NPFR +G+I SS TNNGA+NG+GVQVGYK
Sbjct: 447 NPNNPGGLQAVYQVNQSAYSQLLSATQELGHNPFRRVGLI-SSQTNNGAMNGIGVQVGYK 505
Query: 475 QFFGEKKRWGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGSDLLFNFINDKNTNFLGKN 534
QFFGEK+RWGLRYYGFFDYNHAYIKS+FFNSASDV+TYGVG+D+L+NFINDK T KN
Sbjct: 506 QFFGEKRRWGLRYYGFFDYNHAYIKSSFFNSASDVFTYGVGTDVLYNFINDKTT----KN 561
Query: 535 NKISVGFFGGIALAGTSWLNSQFVNLKTISNVYSAKVNTANFQFLFNLGLRTNLARPKKK 594
+KIS G FGGIALAGTSWLNSQ+VNL T +N YSAK+N ANFQFLFNLGLR NLA+ KKK
Sbjct: 562 SKISFGVFGGIALAGTSWLNSQYVNLATFNNFYSAKMNVANFQFLFNLGLRMNLAKNKKK 621
Query: 595 DSHHAAQHGMELGVKIPTINTNYYSFLDTKLEYRRLYSVYLNYVFAY 641
S HAAQHG+ELGVKIPTINTNYYS L T+L+YRRLYSVYLNYVFAY
Sbjct: 622 ASDHAAQHGVELGVKIPTINTNYYSLLGTQLQYRRLYSVYLNYVFAY 668
>ref|NP_223979.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 696
Score = 539 bits (1388), Expect = e-155
Identities = 327/722 (45%), Positives = 415/722 (57%), Gaps = 107/722 (14%)
Query: 1 MKKTKKTILLSLTLAASLLHAEDNGVFLSVGYQIGEAVQKVKNADKVQKLSDTYEQLSRL 60
MK K LS +L ASL AED+G ++SVGYQIGEAVQKVKN +Q L+D Y+ LS L
Sbjct: 1 MKIKKSLFALSFSLMASLSRAEDDGFYMSVGYQIGEAVQKVKNTGALQNLADRYDNLSNL 60
Query: 61 LTNDNGTNS----KTSAQAINQAVNNLNERAKTLAGGTTNSPAYQATLLALRSVLGLWNS 116
L N NS ++ AI A++NL+ A L TT SPAYQA LAL + +G+W
Sbjct: 61 LNQYNYLNSLVNLASTPSAITGAIDNLSSSAINLTSATTTSPAYQAVALALNAAVGMWQV 120
Query: 117 MGYAVICGGYTKSPGENNQKDFHYTDENGNGTTINCGGSTNSNGTHSSSGTNTLKADKNV 176
+ + + CG E+ + + +N + N G T + + +S N
Sbjct: 121 IAFGISCGPGPNLGPEHLENGGVRSFDNTPNYSYNTGSGTTTTTCNGASNVGP-----NG 175
Query: 177 SLSIEQYEKIHEAYQILSKALKQ---AGLAPLNS-KGEKLEAHVTTSK--------PENN 224
LS +Y+ ++ AYQ + AL Q G+ LNS K + + T +K P+ N
Sbjct: 176 ILSSSEYQVLNTAYQTIQTALNQNQGGGMPALNSSKNMVVNINQTFTKNPTTEYTYPDGN 235
Query: 225 SQTKTTTSVI------DTTNDAQNLLTQAQTIVNTLKDYCPMLIAKSSSESSGAATTNAP 278
+ S I + NDA+NLL QA TI+N L P + G A
Sbjct: 236 GNYYSGGSSIPIQLKISSVNDAENLLQQAATIINVLTTQNPHV------NGGGGA----- 284
Query: 279 SWQTAGGGKNSCATFGAEFSAASDMINNAQKIVQETQQLSANQPKNITQPHNLNLNTPSS 338
W G N FG F+A ++MI NAQ ++++TQQL+AN+ ITQP N N T S
Sbjct: 285 -WGFGGKTGNVMDIFGDSFNAINEMIKNAQAVLEKTQQLNANENTQITQPDNFNPYT-SK 342
Query: 339 LTALAQKMLKNAQSQAEILKLANQVESDFNKLSSGHLKDYIGKCDASAISSANMTMQNQK 398
T AQ+ML A +QAEIL LA QV +F+ + G ++ + +C A + N
Sbjct: 343 DTQFAQEMLNRANAQAEILSLAQQVADNFHSIQ-GPIQQDLEECTAGSAGVIN------D 395
Query: 399 NNWGNGCAGVEETLSSL------------------------KTSAADFNNQTPQINQA-Q 433
N +G+GCA V+ETL+SL K + + N + IN
Sbjct: 396 NTYGSGCAFVKETLNSLEQHTAYYGNQVNQDRALSQTILNFKEALSTLGNDSKAINSGIS 455
Query: 434 NLAN----------------------------------TLIQELGNNPFRNMGMIASSTT 459
NL N T+ QELG NPFR +G+I +
Sbjct: 456 NLPNAKSLQNMTHATQNPNSPEGLLTYSLDTSKYNQLQTVAQELGKNPFRRIGVI-NYQN 514
Query: 460 NNGALNGLGVQVGYKQFFGEKKRWGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGSDLL 519
NNGA+NG+GVQ GYKQFFG+K+ WGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVG D L
Sbjct: 515 NNGAMNGIGVQAGYKQFFGKKRNWGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGMDAL 574
Query: 520 FNFINDKNTNFLGKNNKISVGFFGGIALAGTSWLNSQFVNLKTISNVYSAKVNTANFQFL 579
+NFINDKNTNFLGKNNK+SVG FGG ALAGTSWLNSQ VNL ++ +Y+A V+ +NFQFL
Sbjct: 575 YNFINDKNTNFLGKNNKLSVGLFGGFALAGTSWLNSQQVNLTMMNGIYNANVSASNFQFL 634
Query: 580 FNLGLRTNLARPKKKDSHHAAQHGMELGVKIPTINTNYYSFLDTKLEYRRLYSVYLNYVF 639
F+LGLR NLARPKKKDS HAAQHGMELGVKIPTINT+YYSF+ +L+YRRLYSVYLNYVF
Sbjct: 635 FDLGLRMNLARPKKKDSDHAAQHGMELGVKIPTINTDYYSFMGAELKYRRLYSVYLNYVF 694
Query: 640 AY 641
AY
Sbjct: 695 AY 696
>ref|NP_222933.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 696
Score = 539 bits (1388), Expect = e-155
Identities = 327/722 (45%), Positives = 415/722 (57%), Gaps = 107/722 (14%)
Query: 1 MKKTKKTILLSLTLAASLLHAEDNGVFLSVGYQIGEAVQKVKNADKVQKLSDTYEQLSRL 60
MK K LS +L ASL AED+G ++SVGYQIGEAVQKVKN +Q L+D Y+ LS L
Sbjct: 1 MKIKKSLFALSFSLMASLSRAEDDGFYMSVGYQIGEAVQKVKNTGALQNLADRYDNLSNL 60
Query: 61 LTNDNGTNS----KTSAQAINQAVNNLNERAKTLAGGTTNSPAYQATLLALRSVLGLWNS 116
L N NS ++ AI A++NL+ A L TT SPAYQA LAL + +G+W
Sbjct: 61 LNQYNYLNSLVNLASTPSAITGAIDNLSSSAINLTSATTTSPAYQAVALALNAAVGMWQV 120
Query: 117 MGYAVICGGYTKSPGENNQKDFHYTDENGNGTTINCGGSTNSNGTHSSSGTNTLKADKNV 176
+ + + CG E+ + + +N + N G T + + +S N
Sbjct: 121 IAFGISCGPGPNLGPEHLENGGVRSFDNTPNYSYNTGSGTTTTTCNGASNVGP-----NG 175
Query: 177 SLSIEQYEKIHEAYQILSKALKQ---AGLAPLNS-KGEKLEAHVTTSK--------PENN 224
LS +Y+ ++ AYQ + AL Q G+ LNS K + + T +K P+ N
Sbjct: 176 ILSSSEYQVLNTAYQTIQTALNQNQGGGMPALNSSKNMVVNINQTFTKNPTTEYTYPDGN 235
Query: 225 SQTKTTTSVI------DTTNDAQNLLTQAQTIVNTLKDYCPMLIAKSSSESSGAATTNAP 278
+ S I + NDA+NLL QA TI+N L P + G A
Sbjct: 236 GNYYSGGSSIPIQLKISSVNDAENLLQQAATIINVLTTQNPHV------NGGGGA----- 284
Query: 279 SWQTAGGGKNSCATFGAEFSAASDMINNAQKIVQETQQLSANQPKNITQPHNLNLNTPSS 338
W G N FG F+A ++MI NAQ ++++TQQL+AN+ ITQP N N T S
Sbjct: 285 -WGFGGKTGNVMDIFGDSFNAINEMIKNAQAVLEKTQQLNANENTQITQPDNFNPYT-SK 342
Query: 339 LTALAQKMLKNAQSQAEILKLANQVESDFNKLSSGHLKDYIGKCDASAISSANMTMQNQK 398
T AQ+ML A +QAEIL LA QV +F+ + G ++ + +C A + N
Sbjct: 343 DTQFAQEMLNRANAQAEILSLAQQVADNFHSIQ-GPIQQDLEECTAGSAGVIN------D 395
Query: 399 NNWGNGCAGVEETLSSL------------------------KTSAADFNNQTPQINQA-Q 433
N +G+GCA V+ETL+SL K + + N + IN
Sbjct: 396 NTYGSGCAFVKETLNSLEQHTAYYGNQVNQDRALSQTILNFKEALSTLGNDSKAINSGIS 455
Query: 434 NLAN----------------------------------TLIQELGNNPFRNMGMIASSTT 459
NL N T+ QELG NPFR +G+I +
Sbjct: 456 NLPNAKSLQNMTHATQNPNSPEGLLTYSLDTSKYNQLQTVAQELGKNPFRRIGVI-NYQN 514
Query: 460 NNGALNGLGVQVGYKQFFGEKKRWGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGSDLL 519
NNGA+NG+GVQ GYKQFFG+K+ WGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVG D L
Sbjct: 515 NNGAMNGIGVQAGYKQFFGKKRNWGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGMDAL 574
Query: 520 FNFINDKNTNFLGKNNKISVGFFGGIALAGTSWLNSQFVNLKTISNVYSAKVNTANFQFL 579
+NFINDKNTNFLGKNNK+SVG FGG ALAGTSWLNSQ VNL ++ +Y+A V+ +NFQFL
Sbjct: 575 YNFINDKNTNFLGKNNKLSVGLFGGFALAGTSWLNSQQVNLTMMNGIYNANVSASNFQFL 634
Query: 580 FNLGLRTNLARPKKKDSHHAAQHGMELGVKIPTINTNYYSFLDTKLEYRRLYSVYLNYVF 639
F+LGLR NLARPKKKDS HAAQHGMELGVKIPTINT+YYSF+ +L+YRRLYSVYLNYVF
Sbjct: 635 FDLGLRMNLARPKKKDSDHAAQHGMELGVKIPTINTDYYSFMGAELKYRRLYSVYLNYVF 694
Query: 640 AY 641
AY
Sbjct: 695 AY 696
>ref|NP_222743.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 690
Score = 520 bits (1340), Expect = e-149
Identities = 322/712 (45%), Positives = 398/712 (55%), Gaps = 99/712 (13%)
Query: 6 KTILLSLTLAA---SLLHAEDNGVFLSVGYQIGEAVQKVKNADKVQKLSDTYEQLSRLLT 62
K LSLTL + S L AEDNG F+S GYQIGE+ Q VKN +Q LSD+YE+L+ LLT
Sbjct: 2 KKKFLSLTLGSLLVSALSAEDNGFFVSAGYQIGESAQMVKNTKGIQDLSDSYERLNNLLT 61
Query: 63 NDNGTNS----KTSAQAINQAVNNLNERAKTLAGGTTNSPAYQATLLALRSVLGLWNSMG 118
N + N+ AIN A NLN AK L NSPAYQA LLAL + GLW M
Sbjct: 62 NYSVLNALIRQSADPNAINNARGNLNASAKNLINDKKNSPAYQAVLLALNAAAGLWQVMS 121
Query: 119 YAVICGGYTKSPGENNQ-KDFHYTDENG-NGTTINCGGSTNSNGTHSSSGTNTLKADKNV 176
YA+ G K +N + FH T N GTTI CG + G +S
Sbjct: 122 YAISPCGPGKDTSKNGGVQTFHNTPSNQWGGTTITCGTTGYEPGPYSI------------ 169
Query: 177 SLSIEQYEKIHEAYQILSKALKQAGLAPLNSKGEKLEAHVTTSKPENNSQTKTTTSVIDT 236
LS E Y KI++AYQI+ KA +G E T +K N+ T I T
Sbjct: 170 -LSTENYAKINKAYQIIQKAFGSSGKDIPALSDTNTELKFTINKNNGNTNTNNNGEEIVT 228
Query: 237 TNDAQNLLTQAQTIVNTLKDYCPMLIAKSSSESSGAATTNAPSWQTAGGGKNSCATFGAE 296
N+AQ LL QA TI+ TL CP + ++ + GA++ + G ++C F E
Sbjct: 229 KNNAQVLLEQASTIITTLNSACPWI---NNGGAGGASSGSLWEGIYLKGDGSACGIFKNE 285
Query: 297 FSAASDMINNAQKIVQETQQLSAN--QPKNITQPHNLNLNTPSSLTALAQKMLKNAQSQA 354
SA DMI NA V++++ ++AN +N+ N P AQ M NA++QA
Sbjct: 286 ISAIQDMIKNAAIAVEQSKIVAANAQNQRNLDTGKTFN---PYKDANFAQSMFANAKAQA 342
Query: 355 EILKLANQVESDFNKLSSGHLKDYIGKCDASAISSANMTMQNQ--KNNWGNGCAGVEETL 412
EIL A V DF ++ + +KD +G C T N WG GCA V ET+
Sbjct: 343 EILNRAQAVVKDFERIPAEFVKDSLGVCHEVQNGHLRGTPSGTVTDNTWGAGCAYVGETV 402
Query: 413 SSLKTSAA--------------------DFNNQTPQINQ--------------AQNLANT 438
++LK S A +F++Q ++ + AQ+L N
Sbjct: 403 TNLKDSIAHFGDQAERIHNARNLAYTLANFSSQYQKLGEHYDSITAAISSLPDAQSLQNV 462
Query: 439 LI-----------------------------QELGNNPFRNMGMIASSTTNNGALNGLGV 469
+ QELG+NPFR G+IA+STTNNGA+NG+G
Sbjct: 463 VSKKTNPNSPQGIQDNYYIDSNIHSQVQSRSQELGSNPFRRAGLIAASTTNNGAMNGIGF 522
Query: 470 QVGYKQFFGEKKRWGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGSDLLFNFINDKNTN 529
QVGYKQFFG+ KRWG RYYGF DYNH Y KS FFN++SDVWTYGVGSDLL NFINDK T
Sbjct: 523 QVGYKQFFGKNKRWGARYYGFVDYNHTYNKSQFFNASSDVWTYGVGSDLLVNFINDKAT- 581
Query: 530 FLGKNNKISVGFFGGIALAGTSWLNSQFVNLKTISNVYSAKVNTANFQFLFNLGLRTNLA 589
K+NKIS G FGGIALAGTSWLNSQ+VNL ++N Y AK+NTANFQFLFNLGLR NLA
Sbjct: 582 ---KHNKISFGAFGGIALAGTSWLNSQYVNLANVNNYYKAKINTANFQFLFNLGLRMNLA 638
Query: 590 RPKKKDSHHAAQHGMELGVKIPTINTNYYSFLDTKLEYRRLYSVYLNYVFAY 641
R K + + +AAQHG+ELG KIPTINTNYYS L T L+YRRLYSVYLNYVFAY
Sbjct: 639 RKKHRATDNAAQHGIELGTKIPTINTNYYSLLGTTLQYRRLYSVYLNYVFAY 690
>ref|NP_223882.1| outer membrane protein - adhesin [Helicobacter pylori J99]
Length = 703
Score = 517 bits (1331), Expect = e-148
Identities = 316/730 (43%), Positives = 405/730 (55%), Gaps = 121/730 (16%)
Query: 5 KKTILLSLTLAASLLHAEDNGVFLSVGYQIGEAVQKVKNADKVQKLSDTYEQLSRLLTND 64
KKT+LLSL+L+ L HAED+G + S G +IGEA Q VKN +Q+LS+ YE+L+ LL N
Sbjct: 2 KKTLLLSLSLSFGL-HAEDDGFYASAGIRIGEAAQMVKNTKGIQQLSENYEKLNNLLNNY 60
Query: 65 NGTNS----KTSAQAINQAVNNLNERAKTLAGGTTNSPAYQATLLALRSVLGLWNSMGYA 120
N N+ + A+N A +NL + L NSPAYQA LLAL + +GLW YA
Sbjct: 61 NTLNTLVKLSSDPSAVNDARDNLGSSTRNLLDVKANSPAYQAVLLALNAAVGLWQVTSYA 120
Query: 121 VICGGYTKSPGENNQKDFHYTDENGNGTTINCGGSTNSNGTHSSSGTNTLKADKNVSLSI 180
G PG N EN NG I + T + + + + +S
Sbjct: 121 FTACG----PGSN---------ENANGG-IQTFNNVPGQNTTTITCNSYYEPGHGGPIST 166
Query: 181 EQYEKIHEAYQILSKALKQ--AGLAPLNSKGEKLEAHVTTSKPE---------------- 222
+ Y I++AYQI+ KAL G+ L++ KL+ + K
Sbjct: 167 KNYAIINKAYQIIQKALTANGEGIPVLSNTTTKLDFTINGDKRTGGEPNKKLVYPWSHGK 226
Query: 223 ------NNSQTKTTTSVIDTTNDAQNLLTQAQTIVNTLKDYCPMLIAKSSSESSGAATTN 276
N + T TT I+TTN AQ LL QA I+ TL CP + ++ G+
Sbjct: 227 AISTSWNATITAPTTENINTTNSAQELLKQASIIITTLNSACP------NFQNGGSGY-- 278
Query: 277 APSWQTAGGGKNSCATFGAEFSAASDMINNAQKIVQETQQLSANQPKNITQPHNLNLNTP 336
W G C F E SA MI NAQ+ V + + +S N + N P
Sbjct: 279 ---WAGISGNGTMCGMFKNEISAIQGMIANAQEAVAQAKIVSENTQNQNSLDAGKPFN-P 334
Query: 337 SSLTALAQKMLKNAQSQAEILKLANQVESDFNKLSSGHLKDYIGKCDASAISSANMTMQN 396
+ + A+ MLKNAQ+QAEIL A QV +F K+ + + D +G C T
Sbjct: 335 YTDASFAESMLKNAQAQAEILNQAEQVVKNFEKIPTAFVNDSLGVCYEVQGGERRGTNPG 394
Query: 397 Q--KNNWGNGCA---------------------------GVEETLSSLKTSAADFNNQTP 427
Q N WG GCA + +TL + K+ ++ N
Sbjct: 395 QTTSNTWGAGCAYVGQTITNLKNSIAHFGTQEQQIQQAENIADTLVNFKSRYSELGNTYN 454
Query: 428 QIN-------QAQNLAN-----------------------------TLIQELGNNPFRNM 451
I AQ+L N T+ QELG NPFR +
Sbjct: 455 SITTALSNIPNAQSLQNAVSKKNNPYSPQGIDTNYYLNQNSYNQIQTINQELGRNPFRKV 514
Query: 452 GMIASSTTNNGALNGLGVQVGYKQFFGEKKRWGLRYYGFFDYNHAYIKSNFFNSASDVWT 511
G++ SS TNNGA+NG+G+QVGYKQFFG+K++WG RYYGFFDYNHA+IKS+FFNSASDVWT
Sbjct: 515 GIV-SSQTNNGAMNGIGIQVGYKQFFGQKRKWGARYYGFFDYNHAFIKSSFFNSASDVWT 573
Query: 512 YGVGSDLLFNFINDKNTNFLGKNNKISVGFFGGIALAGTSWLNSQFVNLKTISNVYSAKV 571
YG G+D L+NFINDK TNFLGKNNK+SVG FGGIALAGTSWLNS++VNL T++NVY+AK+
Sbjct: 574 YGFGADALYNFINDKATNFLGKNNKLSVGLFGGIALAGTSWLNSEYVNLATMNNVYNAKM 633
Query: 572 NTANFQFLFNLGLRTNLARPKKKDSHHAAQHGMELGVKIPTINTNYYSFLDTKLEYRRLY 631
N ANFQFLFN+G+R NLARPKKKDS HAAQHG+ELG+KIPTINTNYYSF+ +L+YRRLY
Sbjct: 634 NVANFQFLFNMGVRMNLARPKKKDSDHAAQHGIELGLKIPTINTNYYSFMGAELKYRRLY 693
Query: 632 SVYLNYVFAY 641
SVYLNYVFAY
Sbjct: 694 SVYLNYVFAY 703
>ref|NP_223551.1| outer membrane protein - adhesin [Helicobacter pylori J99]
Length = 744
Score = 513 bits (1320), Expect = e-147
Identities = 323/766 (42%), Positives = 418/766 (54%), Gaps = 153/766 (19%)
Query: 6 KTILLSLTLAA---SLLHAEDNGVFLSVGYQIGEAVQKVKNADKVQKLSDTYEQLSRLLT 62
K +LSLTL + S L AED+G + SVGYQIGEA Q V N +Q LSD YE L+ LL
Sbjct: 2 KKHILSLTLGSLLVSTLSAEDDGFYTSVGYQIGEAAQMVTNTKGIQDLSDRYESLNNLLN 61
Query: 63 NDNGTNS--KTSAQ--AINQAVNNLNERAKTLAGGTTNSPAYQATLLALRSVLGLWNSMG 118
+ N+ K SA AIN NL AK L G NSPAYQA LLA+ + +G WN +G
Sbjct: 62 RYSTLNTLIKLSADPSAINAVRENLGASAKNLIGDKANSPAYQAVLLAINAAVGFWNVVG 121
Query: 119 YAVICGGYTKSPGENNQKDFHYTDENGNGTTINCGGSTNSNGTHSSSGTNTLKADKNVSL 178
Y CGG + K + T+I C + +S G + +
Sbjct: 122 YVTQCGGNANGQKSISSKTIFNNEPGYRSTSITCSLNGHSPGYYGP-------------M 168
Query: 179 SIEQYEKIHEAYQILSKALKQAGLAPLNSKGEK--------------------------- 211
SIE ++K++EAYQIL ALK+ GL L K
Sbjct: 169 SIENFKKLNEAYQILQTALKR-GLPALKENNGKVNVTYTYTCSGDGNNNCSSQVTGVNNQ 227
Query: 212 -------------------LEAHVTTSKPENN----SQTKTTTSVIDTTNDAQNLLTQAQ 248
+ + V S+ + N S T+ T + + AQ LL QA
Sbjct: 228 KDGTKTKIQTIDGKSVTTTISSKVVDSRADGNTTGVSYTEITNKLEGVPDSAQALLAQAS 287
Query: 249 TIVNTLKDYCPMLIAKSSSESSGAATTNAPSWQTAGGGKNSCATFGAEFSAASDMINNAQ 308
T++NT+ + CP A +SSE+ NAP + T G C F E SA MI +AQ
Sbjct: 288 TLINTINNACPYFHASNSSEA------NAPKFSTTTG--KICGAFSEEISAIQKMITDAQ 339
Query: 309 KIVQETQQLSANQPKNITQPHNLNLNTPSSLTALAQKMLKNAQSQAEILKLANQVESDFN 368
++V +T ++ ++ +N P + + AQ ML NA +QA++L LA QV N
Sbjct: 340 ELVNQTSVINEHEQTTPVGNNNGKPFNPFTDASFAQGMLANASAQAKMLNLAEQVGQAIN 399
Query: 369 --KLSS---GHLKDYIGKCD-----------------------ASAISSANMTMQNQKNN 400
+LS +K ++ C+ AS + T+ N KN+
Sbjct: 400 PERLSGTFQNFVKGFLATCNNPSTAGTGGTQGSAPGTVTTQTFASGCAYVGQTITNLKNS 459
Query: 401 ------------------------------WGNGCAGVEETLS------SLKTSAADFNN 424
GN + LS SL+ + + NN
Sbjct: 460 IAHFGTQEQQIQQAENIADTLVNFKSRYSELGNTYNSITTALSNIPNAQSLQNAVSKKNN 519
Query: 425 Q-TPQ-------INQ-AQNLANTLIQELGNNPFRNMGMIASSTTNNGALNGLGVQVGYKQ 475
+PQ +NQ + N T+ QELG NPFR +G++ SS TNNGA+NG+G+QVGYKQ
Sbjct: 520 PYSPQGIDTNYYLNQNSYNQIQTINQELGRNPFRKVGIV-SSQTNNGAMNGIGIQVGYKQ 578
Query: 476 FFGEKKRWGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGSDLLFNFINDKNTNFLGKNN 535
FFG+K++WG RYYGFFDYNHA+IKS+FFNSASDVWTYG G+D L+NFINDK TNFLGKNN
Sbjct: 579 FFGQKRKWGARYYGFFDYNHAFIKSSFFNSASDVWTYGFGADALYNFINDKATNFLGKNN 638
Query: 536 KISVGFFGGIALAGTSWLNSQFVNLKTISNVYSAKVNTANFQFLFNLGLRTNLARPKKKD 595
K+SVG FGGIALAGTSWLNS++VNL T++NVY+AK+N ANFQFLFN+G+R NLARPKKKD
Sbjct: 639 KLSVGLFGGIALAGTSWLNSEYVNLATMNNVYNAKMNVANFQFLFNMGVRMNLARPKKKD 698
Query: 596 SHHAAQHGMELGVKIPTINTNYYSFLDTKLEYRRLYSVYLNYVFAY 641
S HAAQHG+ELG+KIPTINTNYYSF+ +L+YRRLYSVYLNYVFAY
Sbjct: 699 SDHAAQHGIELGLKIPTINTNYYSFMGAELKYRRLYSVYLNYVFAY 744
>ref|NP_223377.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 638
Score = 414 bits (1064), Expect = e-117
Identities = 283/690 (41%), Positives = 363/690 (52%), Gaps = 106/690 (15%)
Query: 5 KKTILLSLTL--AASLLHAEDNGVFLSVGYQIGEAVQKVKNADKVQKLSDTYEQLSRLLT 62
KKTILLSL+L A+SLLHAEDNG F+S GYQIGEAVQ VKN +++ L+D YEQLS+ L
Sbjct: 2 KKTILLSLSLSLASSLLHAEDNGFFVSAGYQIGEAVQMVKNTGELKNLNDKYEQLSQSLA 61
Query: 63 N----DNGTNSKTSAQAINQAVNNLNERAKTLAGGTTNSPAYQATLLALRSVLGLWNSMG 118
+ + QA+N A+++L A SP Y + SVL W+
Sbjct: 62 QLASLKKSIQTANNIQAVNNALSDLKSFASNNHTNKETSPIYNTAQAVITSVLAFWSL-- 119
Query: 119 YAVICGGYTKSPGENNQKDFHYTDENGNGTTINCGGSTNSNGTHSSSGTNTLKADKNVSL 178
YA N FH T +N G ++ H L+ +
Sbjct: 120 YA------------GNALSFHVTG-------LNDGSNSPLGRIHRDGNCTGLQ---QCFM 157
Query: 179 SIEQYEKIHEAYQILSKALKQAGLAPLNSKGEKLEAHVTTSKPENNSQTKTTTSVIDTTN 238
S E Y+K+ + L KA Q L L+ +S N +T TT+ + T
Sbjct: 158 SKETYDKMKTLAENLQKA--QGNLCALSE---------CSSNQSNGGKTSMTTA-LQTAQ 205
Query: 239 DAQNLLTQAQTIVNTLKDYCPMLIAKSSSESSGAATTNAPSWQTAGGGKNSCATFGAEFS 298
+L+ Q + + + ++IA +++ +GA T+ G A F
Sbjct: 206 QLMDLIEQTKVSMV----WKNIVIAGVTNKPNGAGAI------TSTGHVTDYAVFN-NIK 254
Query: 299 AASDMINNAQKIVQETQQLSANQPKNITQPHNLNLNTPSSLTALAQKMLKNAQSQAEILK 358
A ++ A + Q LS Q + N + ALAQ + + + I
Sbjct: 255 AMLPILQQALTLSQSNHTLST-QLQARAMGSQTNREFAKDIYALAQNQKQILSNASSIFN 313
Query: 359 LANQVESDFNK-LSSGHLK-DYIGKCDASAISSANMTMQNQKNNWGNGCAGVEETLSSLK 416
L N + D K L + +LK ++GK + N+ + + N + A L S
Sbjct: 314 LFNSIPKDQLKYLENAYLKVPHLGKTPTNPYRQ-NVNLNKEINAVQDNVANYGNRLDSAL 372
Query: 417 TSAADF----NNQTPQI---NQAQNLA--------------------------------- 436
+ A D +NQT + N A+NL+
Sbjct: 373 SVAKDVYNLKSNQTEIVTTYNDAKNLSEEISKLPYNQVNVTNIVMSPKDSTAGQYQINPE 432
Query: 437 -----NTLIQELGNNPFRNMGMIASSTTNNGALNGLGVQVGYKQFFGEKKRWGLRYYGFF 491
N + + NNPF+ +GMI SS NNGALNGLGVQVGYKQFFGE KRWGLRYYGFF
Sbjct: 433 QQSNLNQALAAMSNNPFKKVGMI-SSQNNNGALNGLGVQVGYKQFFGESKRWGLRYYGFF 491
Query: 492 DYNHAYIKSNFFNSASDVWTYGVGSDLLFNFINDKNTNFLGKNNKISVGFFGGIALAGTS 551
DYNH YIKS+FFNS+SD+WTYG GSDLL NFIND T KNNK+SVG FGGI LAGT+
Sbjct: 492 DYNHGYIKSSFFNSSSDIWTYGGGSDLLVNFINDSITR---KNNKLSVGLFGGIQLAGTT 548
Query: 552 WLNSQFVNLKTISNVYSAKVNTANFQFLFNLGLRTNLARPKKKDSHHAAQHGMELGVKIP 611
WLNSQ++NL +N YSAKVN +NFQFLFNLGLRTNLA KKKDS +AQHG+ELG+KIP
Sbjct: 549 WLNSQYMNLTAFNNPYSAKVNASNFQFLFNLGLRTNLATAKKKDSERSAQHGVELGIKIP 608
Query: 612 TINTNYYSFLDTKLEYRRLYSVYLNYVFAY 641
TINTNYYSFL TKLEYRRLYSVYLNYVFAY
Sbjct: 609 TINTNYYSFLGTKLEYRRLYSVYLNYVFAY 638
>ref|NP_223380.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 651
Score = 403 bits (1036), Expect = e-114
Identities = 273/695 (39%), Positives = 364/695 (52%), Gaps = 103/695 (14%)
Query: 5 KKTILLSLTL--AASLLHAEDNGVFLSVGYQIGEAVQKVKNADKVQKLSDTYEQLSRLLT 62
KKTILLSL+L A+SLLHAEDNG F+S GYQIGEAVQ VKN +++ L++ YEQLS+ L
Sbjct: 2 KKTILLSLSLSLASSLLHAEDNGFFVSAGYQIGEAVQMVKNTGELKNLNEKYEQLSQYLN 61
Query: 63 N----DNGTNSKTSAQAINQAVNNLNERAKTLAGGTTNSPAYQATLLALRSVLGLWNSMG 118
+ + + +N ++N L TT SP + A + SVLG W+
Sbjct: 62 QVASLKQSIQNANNIELVNSSLNYLKSFTNNNYNSTTQSPIFNAVQAVITSVLGFWSL-- 119
Query: 119 YAVICGGYTKSPGENNQKDFHYTDENGNGTTINCGGSTNSNGTHSSSGTNTLKADKNVSL 178
YA N F +++ G S + SG +N ++
Sbjct: 120 YA------------GNYLTFFVVNKDTQKPASVQGNPPFSTIVQNCSGI------ENCAM 161
Query: 179 SIEQYEKIHEAYQILSKALKQAGLAPLNSKGEKLEAHVTTSKPENNSQTKTTTSVIDTTN 238
+ Y+K+ + + L A + A +K L A + + + + T ++ ++
Sbjct: 162 NQTTYDKMKKLAEDLQAAQQNA-----TTKANNLCALSGCATTQGQNPSSTVSNALNLAQ 216
Query: 239 DAQNLLTQAQTIVNTLKDYCPMLIAKSSSESSGAATTNAPSWQTAGGGKNSCATFGAEFS 298
+L+ +T + + ++IA S+ S +T P+ A F
Sbjct: 217 QLMDLIANTKTAMM----WKNIVIAGVSNVSGAIDSTGYPT---------QYAVFN-NIK 262
Query: 299 AASDMINNAQKIVQETQQLSANQPKNITQPHNLNLNTPSSLTALAQKMLKNAQSQAEILK 358
A ++ A + Q LSA+ T N + A AQ + +I
Sbjct: 263 AMIPILQQAVTLSQSNHTLSASLQAQATGSQT-NPKFAKDIYAFAQNQKQVISYAQDIFN 321
Query: 359 LANQVESD-FNKLSSGHLK-DYIGKCDASA------ISSANMTMQNQKNNWGN---GCAG 407
L + + D + L +LK GK + ++ T+QN + +GN
Sbjct: 322 LFSSIPKDQYRYLEKAYLKIPNAGKTPTNPYRQEVNLNQEIQTIQNNVSYYGNRVDAALS 381
Query: 408 VEETLSSLKTSAAD--------------------------------FNNQTP-------Q 428
V + + +LK++ + ++ P Q
Sbjct: 382 VAKDVYNLKSNQTEIVTTYNNAKNLSQEISKLPYNQVNTKDIITLPYDQNAPAAGQYNYQ 441
Query: 429 IN--QAQNLANTLIQELGNNPFRNMGMIASSTTNNGALNGLGVQVGYKQFFGEKKRWGLR 486
IN Q NL+ L + NNPF+ +GMI SS NNGALNGLGVQVGYKQFFGE KRWGLR
Sbjct: 442 INPEQQSNLSQALAA-MSNNPFKKVGMI-SSQNNNGALNGLGVQVGYKQFFGESKRWGLR 499
Query: 487 YYGFFDYNHAYIKSNFFNSASDVWTYGVGSDLLFNFINDKNTNFLGKNNKISVGFFGGIA 546
YYGFFDYNH YIKS+FFNS+SD+WTYG GSDLL NFIND T KNNK+SVG FGGI
Sbjct: 500 YYGFFDYNHGYIKSSFFNSSSDIWTYGGGSDLLVNFINDSITR---KNNKLSVGLFGGIQ 556
Query: 547 LAGTSWLNSQFVNLKTISNVYSAKVNTANFQFLFNLGLRTNLARPKKKDSHHAAQHGMEL 606
LAGT+WLNSQ++NL +N YSAKVN +NFQFLFNLGLRTNLA KKKDS +AQHG+EL
Sbjct: 557 LAGTTWLNSQYMNLTAFNNPYSAKVNASNFQFLFNLGLRTNLATAKKKDSERSAQHGVEL 616
Query: 607 GVKIPTINTNYYSFLDTKLEYRRLYSVYLNYVFAY 641
G+KIPTINTNYYSFL TKLEYRRLYSVYLNYVFAY
Sbjct: 617 GIKIPTINTNYYSFLGTKLEYRRLYSVYLNYVFAY 651
>ref|NP_222935.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 483
Score = 363 bits (931), Expect = e-102
Identities = 245/639 (38%), Positives = 329/639 (51%), Gaps = 159/639 (24%)
Query: 5 KKTILLSLTLAASLLHAEDNGVFLSVGYQIGEAVQKVKNADKVQKLSDTYEQLSRLLT-- 62
KKTILLSL +++ L AE++GV++SVGYQIGEA Q VKN ++QK+S+ YE L+ LLT
Sbjct: 2 KKTILLSLMVSS--LFAENDGVYMSVGYQIGEAAQMVKNTGEIQKVSNAYENLNNLLTRY 59
Query: 63 NDNGTNSKTSAQAINQAVNNLNERAKTLAGGTTNSPAYQATLLALRSVLGLWNSMGYAVI 122
N+ + + + QA++NL + A L TT + A QA AL S +G+W +
Sbjct: 60 NELKQTASNTDSSTAQAIDNLEKSASRLK--TTPNTANQAVSSALSSAVGMWQVIA---- 113
Query: 123 CGGYTKSPGENNQKDFHYTDENGNGTTINCGGSTNSNGTHSSSGTNTLKADKNVSLSIEQ 182
SN ++S LS +
Sbjct: 114 -----------------------------------SNLANNS-------------LSSSE 125
Query: 183 YEKIHEAYQILSKALKQAGLAPLNSKGEKLEAHVTTSKPENNSQTKTTTSVIDTTNDAQN 242
YEK+ Q+L L+ +NN+ + ND
Sbjct: 126 YEKLKATSQLLQNTLEN----------------------KNNN--------LKIENDYDQ 155
Query: 243 LLTQAQTIVNTLKDYCPMLIAKSSSESSGAATTNAPSWQTAGGGKNSCATFGAEFSAASD 302
LLTQA TI+NTL+ CP G N W G N+CA FG+ F+A +
Sbjct: 156 LLTQASTIINTLQSQCP-----------GVDGGNGKPWGINTSG-NACAIFGSTFNAINS 203
Query: 303 MINNAQKIVQETQQLSANQPKNITQPHNLNLNTPSSLTALAQKMLKNAQSQAEILKLANQ 362
MI++A+K + ++ + P +NA + A+ K NQ
Sbjct: 204 MIDSAKKAAADARRTAPESPNQ-----------------------QNAFTNADFNKNLNQ 240
Query: 363 VESDFNKLSSGHLKDYIGKCDASAISSANMTMQNQKNNWGNGCAGVEETLSSLKTSAADF 422
V S N D I + + T+Q N+ G S + S+ +
Sbjct: 241 VSSVIN--------DTISYLKGDNLETIYNTIQKTPNSKG--------FQSLVSRSSYSY 284
Query: 423 NNQTPQINQAQNLANTLIQELGNNPFRNMGMIASSTTNNGALNGLGVQVGYKQFFGEKKR 482
+ Q +Q Q T +E G+NPFR++G+I +S +NNGA+NG+GVQ+GYKQFFG+ K
Sbjct: 285 SLNETQYSQFQ----TTTKEFGHNPFRSVGLI-NSQSNNGAMNGVGVQLGYKQFFGKNKF 339
Query: 483 WGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGSDLLFNFINDKNTNFLGKNNKISVGFF 542
+G+RYYGFFDYN+AYIKSNFFNSAS+V+TYG GSDLL NFIN + +N K+S G F
Sbjct: 340 FGIRYYGFFDYNYAYIKSNFFNSASNVFTYGAGSDLLLNFINGGS----DRNRKVSFGIF 395
Query: 543 GGIALAGTSWLNSQFVNLKTISNVYSAKVNTANFQFLFNLGLRTNLARPKKKDSHHAAQH 602
GGIALAGT+WLN+Q NLK ++ YSAK+N NFQFLFN GLR H
Sbjct: 396 GGIALAGTTWLNNQSANLKITNSAYSAKINNTNFQFLFNTGLRL-----------QGIHH 444
Query: 603 GMELGVKIPTINTNYYSFLDTKLEYRRLYSVYLNYVFAY 641
G+ELGVKIPTINTNYYSF+ KL YRRLYS+YLNYV AY
Sbjct: 445 GIELGVKIPTINTNYYSFMGAKLAYRRLYSLYLNYVLAY 483
>ref|NP_223566.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 520
Score = 164 bits (415), Expect = 6e-42
Identities = 168/646 (26%), Positives = 270/646 (41%), Gaps = 131/646 (20%)
Query: 1 MKKTKKTILLSLTLAASLLHAEDNGVFLSVGYQIGEAVQKVKNADKVQKLSDTYEQLSRL 60
M K +T+ LSL L AS+ +AED+G F +VGYQ+G+ +Q V+N + ++L+R
Sbjct: 1 MIKKNRTLFLSLALCASISYAEDDGGFFTVGYQLGQVMQDVQNPGGAKS-----DELARE 55
Query: 61 LTNDNGTNSKTSAQAINQAVNNLNERAKTLAGGTTNSPAYQATLLALRSVLGLWNSMGYA 120
L +A N +NN GG A L S+LG +
Sbjct: 56 L----------NADVTNNILNNNT-------GGNVAGALSNAFSQYLYSLLGAYP----- 93
Query: 121 VICGGYTKSPGENNQKDFHYTDENGNGTTINCGGSTNSNGTHSSSGTNTLKADKNVSLSI 180
TK G + + + G+GT C + + GT ++
Sbjct: 94 ------TKLNGNDVSANALLSGAVGSGT---CAAAGTAGGTTLNT--------------- 129
Query: 181 EQYEKIHEAYQILSKALKQAGLAPLNSKGEKLEAHVTTSKPENNSQTKTTTSVIDTTNDA 240
A AG L S +++ ++T + N T T
Sbjct: 130 -------------QSACTAAGYYWLPSLTDRI---LSTIGSQTNYGTNTN---FPNMQQQ 170
Query: 241 QNLLTQAQTIVNTLKDYCPMLIAKSSSESSGAATTNAPSWQTAGGGKNSCATFGAEFSAA 300
L N + + E +G AT N+ S +T GA
Sbjct: 171 LTYLNAGNVFFNAMN---------KALEKNGTATANSTS-----------STSGA---TG 207
Query: 301 SDMINNAQKIVQ--ETQQLSANQPKNITQPHNLNLNTPSSLTA--LAQKMLKNAQSQAEI 356
SD +Q+ +Q + QQ N N+ + L L +S A + K +A +
Sbjct: 208 SDGQTYSQQAIQYLQGQQNILNNAANLLKQDELLLEAFNSAVAANIGNKEFNSAAFTGLV 267
Query: 357 LKLANQVESDFNKLSSGHLKDYIGKCDASAISSANMTMQNQKNNWGNGCAGVEETLSSLK 416
+ +Q + +N+L+ + SA+++A + NQ N +++
Sbjct: 268 QGIIDQSQLVYNELTKNTIS-------GSAVNNAGIN-SNQAN--------------AVQ 305
Query: 417 TSAADFNNQTPQINQAQNLANTLIQELGNNPFRNMGMIASSTTNNGALNGLGVQVGYKQF 476
A+ N + + N L ++ + P+ +S N LNG +VGYKQF
Sbjct: 306 GRASQLPNALYNVQVTLDKINALNNQVRSMPYLPQFRAGNSRATN-ILNGFYTKVGYKQF 364
Query: 477 FGEKKRWGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGSDLLFNFINDKNTNFLGKNNK 536
FG+K+ GLRYYGFF YN A + + ++TYGVG+D+L+N + +N
Sbjct: 365 FGKKRNIGLRYYGFFSYNGASVGFRSTQNNVGLYTYGVGTDVLYNIFSRSY-----QNRS 419
Query: 537 ISVGFFGGIALAGTSWLNSQFVNLKTISNV-YSAKVNTANFQFLFNLGLRTNLARPKKKD 595
+ +GFF GI LAG ++ ++ L+ NV K+N +FQFLF+ G+R N + K
Sbjct: 420 VDMGFFSGIQLAGETFQST----LRDDPNVKLHGKINNTHFQFLFDFGMRMNFGKLDGKS 475
Query: 596 SHHAAQHGMELGVKIPTINTNYYSFLDTKLEYRRLYSVYLNYVFAY 641
+ H QH +E GV +PTI YY T ++Y R YSVY +Y +++
Sbjct: 476 NRH-NQHTVEFGVVVPTIYNTYYKSAGTTVKYFRPYSVYWSYGYSF 520
>ref|NP_223567.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 527
Score = 151 bits (381), Expect = 6e-38
Identities = 168/640 (26%), Positives = 265/640 (41%), Gaps = 150/640 (23%)
Query: 10 LSLTLAASLLHAEDNGVFLSVGYQIGEAVQKVKNADKVQKLSDTYEQLSRLLTNDNGTNS 69
L+L+L+ + + AE++G F++ GY++G+ VQ+VKN K++ E+L+ LL + N+
Sbjct: 30 LALSLSFNPVGAEEDGGFMTFGYELGQVVQQVKNPGKIKA-----EELAGLLNSTTTNNT 84
Query: 70 KTSAQAINQAVNNLNERAKTLAGGTTNSPAYQATLLALRSVLGLWNSMGYAVICGGYTKS 129
N+N +AG N L N +G
Sbjct: 85 ------------NIN-----IAGTGGNVAGTLGNLFM--------NQLG----------- 108
Query: 130 PGENNQKDFHYTDENGNGTTINCGGSTNSNGTHSSSGTNTLKADK-NVSLSIEQYEKIHE 188
N D + T + N CG + + NG +++ TN + N++L E + I
Sbjct: 109 ----NLIDLYPTLKTNN--LHQCGSTNSGNGATAAAATNNSPCFQGNLALYNEMVDSIKT 162
Query: 189 AYQILSKALKQ-------AGLAPLNSKGEKLEAHVTTSKPENNSQTKTTTSVIDTTNDAQ 241
Q +SK + Q A L+ S+ ++T N+ + + TN A
Sbjct: 163 LSQNISKNIFQGDNNTTSANLSNQLSELNTASVYLTYMNSFLNANNQAGGIFQNNTNQAY 222
Query: 242 NLLTQAQTIVNTLKDYCPMLIAKSSSESSGAATTNAPSWQTAGGGKNSCATFGAEFSAAS 301
AQ I LK A+ T PS G + A + + A
Sbjct: 223 ENGVTAQQIAYVLKQ---------------ASITMGPS------GDSGAAGAFLDAALAQ 261
Query: 302 DMINNAQKIVQETQQLSANQPKNITQPHNLNLNTPSSLTALAQKMLKNAQSQAEILKLAN 361
+ N+A LSA + T+L Q ++ N+Q+ + AN
Sbjct: 262 HVFNSANA----GNDLSAKE-----------------FTSLVQNIVNNSQNALTLANNAN 300
Query: 362 QVESDFNKLSSGHLKDYIGKCDASAISSANMTMQNQKNNWGNGCAGVEETLSSLKTSAAD 421
S +G+ Y G D + S
Sbjct: 301 ISNS------TGYQVSYGGNIDQAR-------------------------------STQL 323
Query: 422 FNNQTPQINQAQNLANTLIQELGNNPFRNMGMIASSTTNNGALNGLGVQVGYKQFFGEKK 481
NN T + + L N EL NP+ A +++ A NG ++GYKQFFGE K
Sbjct: 324 LNNTTNTLAKVTALNN----ELKANPWLG-NFAAGNSSQVNAFNGFITKIGYKQFFGENK 378
Query: 482 RWGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGSDLLFNFINDKNTNFLGKNNKISVGF 541
GLRYYGFF YN A + + + ++ TYGVG+D+L+N + + ++ GF
Sbjct: 379 NVGLRYYGFFSYNGAGVGNGPTYNQVNLLTYGVGTDVLYNVFSRS-----FGSRSLNAGF 433
Query: 542 FGGIALAGTSWLNSQFVNLKTISNVYSAKVNTANFQFLFNLGLRTNLARPKKKDSHHAAQ 601
FGGI LAG +++++ L+ S +++ FQFLF++GLR N KK H Q
Sbjct: 434 FGGIQLAGDTYIST----LRN-SPQLASRPTATKFQFLFDVGLRMNFGILKKDLKSH-NQ 487
Query: 602 HGMELGVKIPTINTNYYSFLDTKLEYRRLYSVYLNYVFAY 641
H +E+GV+IPTI YY +++Y R YSVY Y +A+
Sbjct: 488 HSIEIGVQIPTIYNTYYKAGGAEVKYFRPYSVYWVYGYAF 527
>ref|NP_222959.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 471
Score = 148 bits (373), Expect = 5e-37
Identities = 95/298 (31%), Positives = 145/298 (47%), Gaps = 28/298 (9%)
Query: 350 AQSQAEILKLANQVESDFNKLSSGHLKDYIGKCDASAISSANMTMQNQKNNWGNGCAGVE 409
A +L +V D N + L + + ++ + +N KN G A ++
Sbjct: 196 ATESVALLNALTRVNLDSNSVFLKGLLAQMQLFNDTSSAKLGQIAENLKN--GGAGAMLQ 253
Query: 410 ETLSSLKTSAADFNNQTPQIN-QAQNLANTLIQELGNNPFRNMGMIASSTTNNGALNGLG 468
+ + ++ A + Q+ +N + + G +++ +G +NG G
Sbjct: 254 KDVKTISDRIATYQENLKQLGGMLKNYDEPYLPQFG----------PGTSSQHGVINGFG 303
Query: 469 VQVGYKQFFGEKKRWGLRYYGFFDYNHAYIKSNFFNSA--SDVWTYGVGSDLLFNFINDK 526
+QVGYKQFFG KK GLRYY FFDY + S NSA ++++TYG G+D L+N
Sbjct: 304 IQVGYKQFFGSKKNIGLRYYAFFDYGFTQLGS--LNSAVKANIFTYGAGTDFLWNIFRR- 360
Query: 527 NTNFLGKNNKISVGFFGGIALAGTSWLNSQFVNLKTISNVYSAKVNTANFQFLFNLGLRT 586
+ + ++VG FGGI +AG +W +S I N + NFQFLFNLGLR
Sbjct: 361 ----VFSDQSLNVGVFGGIQIAGNTWDSSL---RGQIENSFKEYPTPTNFQFLFNLGLRA 413
Query: 587 NLARPKKK---DSHHAAQHGMELGVKIPTINTNYYSFLDTKLEYRRLYSVYLNYVFAY 641
+ A + + + QHGME GVKIP IN Y ++YRRLY+ Y+NY +
Sbjct: 414 HFASTMHRRFLSASQSIQHGMEFGVKIPAINQRYLKANGADVDYRRLYAFYINYTIGF 471
Score = 39.3 bits (90), Expect = 3e-04
Identities = 23/64 (35%), Positives = 34/64 (52%), Gaps = 4/64 (6%)
Query: 5 KKTILLSLTLAASLLHAEDNGVFLSVGYQIGEAVQKVKNADKV--QKLSDTYEQLSRLLT 62
K +L SL L+ +L AED+G ++ VGYQIG A Q + N + D + Q+ +
Sbjct: 30 KTALLFSLPLSVAL--AEDDGFYMGVGYQIGGAQQNINNKGSTLRNNVIDDFRQVGVGMA 87
Query: 63 NDNG 66
NG
Sbjct: 88 GGNG 91
>ref|NP_223801.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 1237
Score = 145 bits (366), Expect = 3e-36
Identities = 161/625 (25%), Positives = 258/625 (40%), Gaps = 103/625 (16%)
Query: 61 LTNDNGTNSKTSAQAINQAVNNLNERAKTLAGGTTNSPAYQATLLALRSVLGLWNSMGYA 120
L N + +TS A NN A G++ + YQ + GL +++GY
Sbjct: 672 LINQSQQTQQTSGSA--STTNN----ACASGMGSSGNWCYQQWSDSKAYYSGLQSALGYQ 725
Query: 121 VICGGYTKSPGENNQKDFHYTDENGNGTTINCGGSTNSNGTHSSSGTNTLKADKNVSLSI 180
T++ +N N T+ GG N T+ S + N S
Sbjct: 726 ------TQATTQNGSSGGSNITYNVQQITLTSGGLLNQIITNLKS----VNGGSNGGSSG 775
Query: 181 EQYEKIHEAYQILSKAL-------------------KQAGLAPLNSKGEKLEAHVTTSKP 221
+I+ AYQ+L+ A G P NS ++
Sbjct: 776 NGTSQINTAYQMLTDASDGKLGTYNSSNSSNSSNSGNNNGYTPCNSTNGS-NGTSGSNCY 834
Query: 222 ENNSQTKTTTSVIDTTNDAQNLLTQAQTIVNT-------------LKDYCPMLIAKSSSE 268
E N Q TT+ T ++ Q + AQ I N LK + L + SSS
Sbjct: 835 EPNKQQNATTATTTTDSNLQKVYNDAQKIANIIASSGNNKGVENGLKQFFEALKSNSSSL 894
Query: 269 SSGAATTNAPSWQTAGGGK----NSCATFGAEFSAASDMINNAQKIVQETQQLSANQPKN 324
S+ ++ S T GG + T G S +++IN + ++ T N+ N
Sbjct: 895 SNLCGNGSSGSSSTCSGGLINLLGAIPTNGV--SDTNNLINLLTEFIK-TAGFIQNKDSN 951
Query: 325 ITQPHNLNLNTPSSLTALAQKMLKNAQSQAEILKLANQVESDFNKLSSGHLKDYIGKCDA 384
++ +S + + L+N S IL L ++ S+
Sbjct: 952 VSTSLTSAFQAITSAISQGFQALQNDISPNAILTLLQEITSN-----------------T 994
Query: 385 SAISSANMTMQNQKNNWGNGCAGVEETLSSLKTSAAD-FNNQTPQINQAQNLANTLIQEL 443
+ I S + T++ ++T ++ D N Q+ AQN AN
Sbjct: 995 TTIQSFSQTLRQLLG---------DKTFFMVQQKLIDAMINARNQVQNAQNQANNY---- 1041
Query: 444 GNNPFRNMGMIASSTTNNGALNGLGVQVGYKQFFGEKKRWGLRYYGFFDYNHAYIKSNFF 503
G+ P + A+ +T +G NGLGV +GYK FFG+ ++ GLR+Y FFDY + I
Sbjct: 1042 GSQPVLSQ-YAAAKSTQHGMSNGLGVGIGYKYFFGKARKLGLRHYFFFDYGFSEIGLANQ 1100
Query: 504 NSASDVWTYGVGSDLLFN-FINDKNTNFLGKNNKISVGFFGGIALAGTSWLNSQFVNLKT 562
+ ++++ YGVG+D L+N F NT L + G F G+ L G +WL+S + +
Sbjct: 1101 SVKANIFAYGVGTDFLWNLFRRTYNTKAL------NFGLFAGVQLGGATWLSS--LRQQI 1152
Query: 563 ISNVYSAK-VNTANFQFLFNLGLRTNLARPKK--KDSHH---AAQHGMELGVKIPTINTN 616
I N +A +++ NFQ N G+RTN A K+ K H+ +Q +E G+K+P IN
Sbjct: 1153 IDNWGNANDIHSTNFQVALNFGVRTNFAEFKRFAKKFHNQGVISQKSVEFGIKVPLINQA 1212
Query: 617 YYSFLDTKLEYRRLYSVYLNYVFAY 641
Y + + YRRLY+ Y+NY+ +
Sbjct: 1213 YLNSAGADVSYRRLYTFYINYIMGF 1237
Score = 51.2 bits (121), Expect = 8e-08
Identities = 141/632 (22%), Positives = 228/632 (35%), Gaps = 116/632 (18%)
Query: 1 MKKTKKTILLSLTLAASLLHAEDNGVFLSVGYQIGEAVQKVKNADKVQKLSDTYEQLSRL 60
+KK KK I L SLL AEDNG ++SVGYQIG Q + N +L
Sbjct: 2 IKKAKKFI--PFFLIGSLL-AEDNGWYMSVGYQIGGTQQFINN--------------KQL 44
Query: 61 LTNDNGTNSKTSAQAINQAVNNLNERAKTLAGGTTNSPAYQATLLALRSVLGLWNSMGYA 120
L N N +N++ + A +AG TT L+ L S + +++GY
Sbjct: 45 LENQN-------------IINSITQSAINIAGPTTG-------LITLSSQTVI-DALGYG 83
Query: 121 VICGGYTKSPGENN-------QKDFHYTDE--NGNGTTINCGGSTNSNGTHSSSGT---- 167
V + G +N +KDF+ + + + + I GS++ HSS T
Sbjct: 84 VSNTVGNQLEGISNILNQIGKRKDFYSSRQISSISQQIIGLKGSSDPLKAHSSQITAKLL 143
Query: 168 -NTLKA-DKNVSLSIEQYEKIHEAYQILSKALKQAGLA-PLNSKGEKLE--AHVTTSKPE 222
NT A D+ ++LS ++ + +A L S E L+ H T
Sbjct: 144 SNTQSAFDQGIALSSNIISAVNSLNPSNNSQEVKAQLQNTAQSMAELLQQIEHSITKTTS 203
Query: 223 NNSQTKTTTSVIDTTNDAQNLLTQAQTIVNTLKDYCPMLIAKSSSESSGAATTNAPSWQT 282
+++ D N + N T +VN L + + + +S N P Q
Sbjct: 204 TTYAQSLLSNLTDAVNASSNNTTYVSALVNALN---TLGVGVFPTTTSTHVVLNPPG-QV 259
Query: 283 AGGGKNSCATFGAEFSAASDMINNAQKIVQETQQLSANQPKNITQPHNLNLNTPSSLTAL 342
NS + S NN + +LS N N N N L
Sbjct: 260 VFYPTNSLLGSTSSNSNNQQQYNNTLLMNTLQGELSTNNQNN----PNGCANQIQCLEQF 315
Query: 343 AQKMLKNAQSQAEILKLANQVESDFNKLSSGHLKDYIGKCDASAISSANMTMQNQKN--- 399
Q + A + + QV++ KL S I D +AI++ + N N
Sbjct: 316 IQNLTPLAATPTSTNQANQQVQAIAQKLQS----VAINALDNNAINNTTYNLNNLHNALN 371
Query: 400 ---------NWGNGCAGV-----EETLSSLKTSAADFNNQTPQINQAQNLA----NTLIQ 441
+ N + E + LK ++ ++ T +Q QN++ +
Sbjct: 372 FQAYQSTIEQYNNALKQISWISFSEPKNLLKNTSNNYQIGTVTNDQGQNISAYDCTSATG 431
Query: 442 ELGNNPFRNMGMIASSTTNN-GALNGLGVQVGYKQFFGEKKRWGLRYYGFFDYNHAYIKS 500
L ++ + A+S+TNN + + V Q K++ G+
Sbjct: 432 SLSSDASSGISCSATSSTNNTNSFDNSLVATSKVQTINGKEQIGV--------------- 476
Query: 501 NFFNSASDVWTYGVGSDLLFNFINDKNTNFLGKNNKISVGFFGGIALAGTSWLNSQFVNL 560
N FN S VW+ ++N + N L KN KI + +GTS NS L
Sbjct: 477 NSFNLVSQVWS-------VYNSLKTSEEN-LQKNAKI---LCNNGSQSGTSPCNSSSGGL 525
Query: 561 KTISNVYSAKVNTANFQFLFNLGLRTNLARPK 592
N + + N ++N ++ K
Sbjct: 526 SISGNAQLQNILSPTNGTTTNTQAKSNASKLK 557
Score = 40.4 bits (93), Expect = 1e-04
Identities = 84/344 (24%), Positives = 129/344 (37%), Gaps = 58/344 (16%)
Query: 157 NSNGTHSSSGTNTLKADKNVSLSIEQYEK-IHEAYQILSKALKQAGLAPLNSKGEKLEAH 215
+S T SS + + A V ++ +++ I A+Q ++ A N
Sbjct: 576 SSGPTTQSSNSTVMGALNTVLQNVSNFQQSIQSAFQNQENNIQAWANALYN--------- 626
Query: 216 VTTSKPENNSQTKTTTSVIDTTNDAQNLLTQAQT----IVNTLKDYCPM----LIAKSSS 267
TS P N TT N+ Q+L Q + ++NT+ P LI +S
Sbjct: 627 --TSNPNGNQSQNLTT------NNNQDLRIQLRANFYQLINTINQQVPTDMNALINQSQQ 678
Query: 268 E---SSGAATTNAPSWQTAGGGKNSCATFGAEFSAASDMINNAQKI-VQETQQLSANQPK 323
S A+TTN G N C ++ A + +A Q T Q ++
Sbjct: 679 TQQTSGSASTTNNACASGMGSSGNWCYQQWSDSKAYYSGLQSALGYQTQATTQNGSSGGS 738
Query: 324 NITQPHNLNLNTPSSLTALAQ-----KMLKNAQSQAEILKLANQVESDFNKL---SSGHL 375
NIT +N+ T +S L Q K + + +Q+ + + L S G L
Sbjct: 739 NIT--YNVQQITLTSGGLLNQIITNLKSVNGGSNGGSSGNGTSQINTAYQMLTDASDGKL 796
Query: 376 KDYIGKCDASAISSANMTMQNQKNNWGNGCAGVEETLSSLKTSAADFNNQTPQINQ--AQ 433
Y SS + N NN NG T S TS ++ Q N A
Sbjct: 797 GTYN--------SSNSSNSSNSGNN--NGYTPCNSTNGSNGTSGSNCYEPNKQQNATTAT 846
Query: 434 NLANTLIQELGNNPFRNMGMIASSTTNNGALNGLGVQVGYKQFF 477
++ +Q++ N+ + +IASS N G NGL KQFF
Sbjct: 847 TTTDSNLQKVYNDAQKIANIIASSGNNKGVENGL------KQFF 884
>ref|NP_223332.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 270
Score = 131 bits (329), Expect = 6e-32
Identities = 80/202 (39%), Positives = 106/202 (51%), Gaps = 44/202 (21%)
Query: 464 LNGLGVQVGYKQFFGEKKRWGLRYYGFFDYNHAYIKSNFFNS------------------ 505
+ GLG+ VGYKQFFGEK+ +G RYYGF DY HA +N S
Sbjct: 89 MQGLGLTVGYKQFFGEKRWFGARYYGFMDYGHAVFGANALTSDNGGVCKLNEPCATKVGT 148
Query: 506 ---ASDVWTYGVGSDLLFNFINDKNTNFLGKNNKISVGFFGGIALAGTSWLNS--QFVNL 560
SD++TYGVG D L+N IN ++ +F GFF G +AG SW N+ F+
Sbjct: 149 MGNLSDMFTYGVGIDTLYNVINKEDASF---------GFFFGAQIAGNSWGNTTGAFLET 199
Query: 561 KTISNVYSAKVNTANFQFLFNLGLRTNLARPKKKDSHHAAQH-GMELGVKIPTINTNYYS 619
K+ S ++ A FQFLFNLG+RT H QH + GVKIPTIN Y++
Sbjct: 200 KSPYKHTSYSLDPAIFQFLFNLGIRT-----------HIGQHQEFDFGVKIPTINVYYFN 248
Query: 620 FLDTKLEYRRLYSVYLNYVFAY 641
+ YRR YS+Y+ Y + +
Sbjct: 249 HGNLSFTYRRQYSLYVGYRYNF 270
Score = 30.0 bits (66), Expect = 0.19
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 21/62 (33%)
Query: 6 KTILLSLTLAASLLHAED---------------------NGVFLSVGYQIGEAVQKVKNA 44
KT+ LS+ L SL+ AE N +L + YQ+G+A Q VKN
Sbjct: 8 KTLCLSVVLGNSLVAAEGSTEVQKQLEKPKDYKAVKGEKNAWYLGISYQVGQASQSVKNP 67
Query: 45 DK 46
K
Sbjct: 68 PK 69
>ref|NP_223800.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 697
Score = 129 bits (325), Expect = 2e-31
Identities = 169/718 (23%), Positives = 283/718 (38%), Gaps = 117/718 (16%)
Query: 5 KKTILLSLTLAASLLH---AEDNGVFLSVGYQIGEAVQKVKNAD-KVQKLSDTYEQLSRL 60
KK ++ S L L+ AED+G F+ V YQ AVQ+V N+ + + TY + + +
Sbjct: 8 KKWLIYSSLLPLFFLNPLMAEDDGFFMGVSYQTSLAVQRVDNSGLNASQDASTYIRQNAI 67
Query: 61 LTNDNGTNSKTSAQAINQAVNNL--------NERAKTLAGG----------TTNSPAYQA 102
+A+ Q L ++R AGG T N+P +
Sbjct: 68 ALESAAVPLAYYLEAMGQQTRVLMQMLCPDPSKRCLLYAGGYQNGQNNNGDTGNNPP-RG 126
Query: 103 TLLALRSVLGLWNSMGYAVICGGYT--KSPGENNQKDFHYTDENGNGTTINC--GGSTNS 158
+ A + L N++ G T ++P EN + + GN +T+ G N+
Sbjct: 127 NVNATFDMQSLVNNLNKLTQLIGETLIRNP-ENLPNSKVFNVKFGNQSTVIALPEGLANT 185
Query: 159 NGTHSSSGTNTL------KADKNVSLSIEQYEKIHEAYQILSKALKQAGLAPLNSKGEKL 212
++ TN L + N S S ++ + Q+L L Q GLA N
Sbjct: 186 MDALNNDITNALTTLWYNQTLTNKSFSTPSNTSVNFSPQVLQHLL-QDGLATAN------ 238
Query: 213 EAHVTTSKPENNSQTKTTTSVIDTTNDAQNLLTQAQTIVNTLKD--------------YC 258
NN +T + TN+A+++ AQ I L +
Sbjct: 239 ----------NNQTICSTQNQCTATNEAKSIAQNAQNIFQALMQAGILGGLANEKQFGFT 288
Query: 259 PMLIAKSSSESSGAATTNAPSWQT--------------------AGGGKNSCATFGAEFS 298
S G + + P + T +G G+ + A +
Sbjct: 289 YNKAPNGSDSQQGYQSFSGPGYYTKNDNTTQAPLKALPAGATIGSGNGQYTYHPSSAVYY 348
Query: 299 AASDMINN---AQKIVQETQQLSANQPKNITQPHNLNLNTPSSLTALAQKMLKNAQSQAE 355
A +I N A I Q + K I + N + +L N + +
Sbjct: 349 LADSIIANGITASMIFSGMQNFANKAAKLIGTS---SYNQMQDAINYGESLLSNTVAYGD 405
Query: 356 ILKLANQVESDFNKLSSGHLKDYIGKCDASAISSANMTMQNQKNNWGNGCAGVEE----- 410
+ D N L +Y G+ + + + +T Q + +E+
Sbjct: 406 FITNWVAPYLDLNNKGLNFLPNYGGQLNGANNQTPQLTPQQAQQEQKVIMNQLEQATNAP 465
Query: 411 TLSSLKTSAADFNNQTPQINQAQNLANT------LIQELGN--NPFRNMGMIAS---STT 459
T + + A+ + T + A L + +I E+ N MG + +
Sbjct: 466 TPAQINRILANPYSPTAKTLMAYGLYRSKAVIGGVIDEMQTKVNQVYQMGFARNFLEHNS 525
Query: 460 NNGALNGLGVQVGYKQFFGEKKRWGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGSDLL 519
N+ +NG GV++GYKQFFG+K+ +GLRYYGF+D+ +A + + + +YG G+D L
Sbjct: 526 NSNNMNGFGVKMGYKQFFGKKRMFGLRYYGFYDFGYAQFGTESSLVKATLSSYGAGTDFL 585
Query: 520 FNFINDKNTNFLGKNNKISVGFFGGIALAGTSWLNSQFVNLKTISNVYSAKVNTANFQFL 579
+N K I +GFF GI LAG +W + F++ +++ K +FQFL
Sbjct: 586 YNVFTRKR-----GTEAIDIGFFAGIQLAGQTW-KTNFLDQVDGNHL---KPKDTSFQFL 636
Query: 580 FNLGLRTNLARPKKKDSHHAAQHGMELGVKIPTINTNYYSFLDTKLEYRRLYSVYLNY 637
F+LG+RTN ++ + +Q G+E G+KIP + YY +YRR +S Y+ Y
Sbjct: 637 FDLGIRTNFSKIAHQKRSRFSQ-GIEFGLKIPVLYHTYYQSEGVTAKYRRDFSFYVGY 693
>ref|NP_222958.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 479
Score = 120 bits (302), Expect = 8e-29
Identities = 64/177 (36%), Positives = 96/177 (54%), Gaps = 11/177 (6%)
Query: 461 NGALNGLGVQVGYKQFFGEKKRWGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGSDLLF 520
+ ++NG G ++GYKQFF KK GLRYYGF DY +A +++ TYGVG+D L+
Sbjct: 310 SASMNGFGAKMGYKQFFTHKKNIGLRYYGFLDYGYANFGDTNLKVGANLVTYGVGTDFLY 369
Query: 521 NFINDKNTNFLGKNNKISVGFFGGIALAGTSWLNSQFVNLKTISNVYSAKVNTANFQFLF 580
N + + ++G F G +AG +W N+ + + V +++FQFLF
Sbjct: 370 NVYERSR-----RRERTTIGLFFGAQIAGQTW----STNVTNLLSGQRPDVKSSSFQFLF 420
Query: 581 NLGLRTNLARPKKKDSHHAAQHGMELGVKIPTINTNYYSFLDTKLEYRRLYSVYLNY 637
+LG+RTN A K + H G+E GVKIP I Y++ + Y R +S Y+ Y
Sbjct: 421 DLGVRTNFA--KTNFNKHRLDQGIEFGVKIPVIAHKYFATQGSSASYMRNFSFYVGY 475
Score = 47.4 bits (111), Expect = 1e-06
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 6/114 (5%)
Query: 5 KKTILLSLTLAASLLHAEDNGVFLSVGYQIGEAVQKVKNADKVQKLSDTYEQLSRLLTND 64
KKTI LSL + SL +AE++G F + YQ A Q++KN Q ++L +L+ D
Sbjct: 7 KKTIALSLLASMSLCNAEEDGAFFVIDYQTSLARQELKNPGFTQA-----QELKQLI-RD 60
Query: 65 NGTNSKTSAQAINQAVNNLNERAKTLAGGTTNSPAYQATLLALRSVLGLWNSMG 118
+TSA ++ ++ L + KTL + + Q ++++ L S+G
Sbjct: 61 GAVRLQTSAIPLSYYLDILGNKTKTLLSESLKNNPQQPNGQPNQALVNLEQSLG 114
>ref|NP_223027.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 245
Score = 108 bits (269), Expect = 5e-25
Identities = 74/227 (32%), Positives = 114/227 (49%), Gaps = 25/227 (11%)
Query: 422 FNNQTPQINQAQNLANTLIQELGNNPFRNMGMIASST---TNNGALNGLGVQVGYKQFFG 478
FN QT IN N+ + N+ +S TN G+ NG+G+ +GY FF
Sbjct: 37 FNYQTGSINLMANIHEVREVTSYQTGYTNVMTSINSVKKLTNMGS-NGIGLVMGYNHFFH 95
Query: 479 EKKRWGLRYYGFFD---YNHAYIKSNFFNSASDVWTYGVGSDLLFNFINDKNTNFLGKNN 535
K GLRY+ F D Y Y K + +++ TYGVG D ++NF +F +
Sbjct: 96 PDKVLGLRYFAFLDWQGYGMRYPKGYY--GGNNMITYGVGVDAIWNFFQG---SFYQDDI 150
Query: 536 KISVGFFGGIALAGTSW-LNSQFVNLKTISNVYSAKVNTANFQFLFNLGLRTNLARPKKK 594
+ +G FGGIA+AG SW + ++ L I+N S+ V+ +FQFLFN G +
Sbjct: 151 GVDIGVFGGIAIAGNSWYIGNKGQELLGITN--SSAVDNTSFQFLFNFGFKALFVD---- 204
Query: 595 DSHHAAQHGMELGVKIPTINTNYYSFLDTKLEYRRLYSVYLNYVFAY 641
+H E+G K PT+N YY+ K++ RR+++ Y+ Y + +
Sbjct: 205 ------EHEFEIGFKFPTLNNKYYTTDALKVQMRRVFAFYVGYNYHF 245
>ref|NP_223575.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 366
Score = 105 bits (263), Expect = 3e-24
Identities = 95/371 (25%), Positives = 170/371 (45%), Gaps = 51/371 (13%)
Query: 291 ATFGAEFSAASDMINNAQKIVQETQQLSANQPKNI---TQPHNLNLNTPSSLTALAQKML 347
A+ G E+S + + +N + QE Q +N I Q N N P++ + +
Sbjct: 27 ASVGFEYSISHAVEHNNPFLNQERIQTISNAQNKIYKLNQVKNEITNMPNTFNYINNALK 86
Query: 348 KNAQSQAEILKLANQVESDFNKLSSGHLKDYIGKCDASAISSANMTMQNQKNNWGNGCAG 407
NA+ + Q E+ + + + +++ + S+ + +K
Sbjct: 87 NNAK----LTPTEKQAETYYLQSTLQNIEKIV-MLSGGVASNPKLVQALEK--------- 132
Query: 408 VEETLSSLKTSAADFNNQTPQINQAQN-LANTLIQELGNNPFRNMGMIASSTTNN-GALN 465
++E +++ + N Q +Q+QN + ++L ++ + SS + N ++
Sbjct: 133 MQEPITNPLELVENLKNLELQFSQSQNSMLSSLSSQIAQISNSLNALDPSSYSKNVSSMY 192
Query: 466 GLGVQVGYKQFFGEKKRWGLRYYGFFDY---NHAYIKSNFFN-SASDVWTYGVGSDLLFN 521
G+G+ VGYK FF +KK G RYY F+DY N ++ + F + YG+G D LFN
Sbjct: 193 GVGLSVGYKHFFTKKKNQGFRYYLFYDYGYTNFGFVGNGFDGLGKMNNHLYGLGIDYLFN 252
Query: 522 FINDKNTNFLGKNNKISVGFFGGIALAGTSWLN-------SQFVNLKTISNVYSAKVNTA 574
FI++ + SVGF+ G ALAG+SW+ SQ + Y AK++T+
Sbjct: 253 FIDNAQKH-------SSVGFYVGFALAGSSWVGSGLGMWVSQMDFINNYLTDYRAKMHTS 305
Query: 575 NFQFLFNLGLRTNLARPKKKDSHHAAQHGMELGVKIPTINTNYYSF----LDTKLEYRRL 630
FQ N G+R N+ R +G E+G+KIP ++Y L+ L ++RL
Sbjct: 306 FFQIPLNFGVRVNVDR----------HNGFEMGLKIPLAVNSFYETHGKGLNASLFFKRL 355
Query: 631 YSVYLNYVFAY 641
++YV+++
Sbjct: 356 VMFNVSYVYSF 366
Score = 35.0 bits (79), Expect = 0.006
Identities = 27/84 (32%), Positives = 42/84 (49%), Gaps = 6/84 (7%)
Query: 5 KKTILLSLTLAASLLHAEDNGVFLSVG--YQIGEAVQ---KVKNADKVQKLSDTYEQLSR 59
+KT+L L S AE+NG + SVG Y I AV+ N +++Q +S+ ++ +
Sbjct: 4 QKTLLSLSLLFLSYCIAEENGAYASVGFEYSISHAVEHNNPFLNQERIQTISNAQNKIYK 63
Query: 60 LLTNDNG-TNSKTSAQAINQAVNN 82
L N TN + IN A+ N
Sbjct: 64 LNQVKNEITNMPNTFNYINNALKN 87
>ref|NP_223147.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 371
Score = 105 bits (263), Expect = 3e-24
Identities = 95/371 (25%), Positives = 170/371 (45%), Gaps = 51/371 (13%)
Query: 291 ATFGAEFSAASDMINNAQKIVQETQQLSANQPKNI---TQPHNLNLNTPSSLTALAQKML 347
A+ G E+S + + +N + QE Q +N I Q N N P++ + +
Sbjct: 32 ASVGFEYSISHAVEHNNPFLNQERIQTISNAQNKIYKLNQVKNEITNMPNTFNYINNALK 91
Query: 348 KNAQSQAEILKLANQVESDFNKLSSGHLKDYIGKCDASAISSANMTMQNQKNNWGNGCAG 407
NA+ + Q E+ + + + +++ + S+ + +K
Sbjct: 92 NNAK----LTPTEKQAETYYLQSTLQNIEKIV-MLSGGVASNPKLAQALEK--------- 137
Query: 408 VEETLSSLKTSAADFNNQTPQINQAQN-LANTLIQELGNNPFRNMGMIASSTTNN-GALN 465
++E +++ + N Q +Q+QN + ++L ++ + SS + N ++
Sbjct: 138 MQEPITNPLELVENLKNLELQFSQSQNSMLSSLSSQIAQISNSLNALDPSSYSKNVSSMY 197
Query: 466 GLGVQVGYKQFFGEKKRWGLRYYGFFDY---NHAYIKSNFFN-SASDVWTYGVGSDLLFN 521
G+G+ VGYK FF +KK G RYY F+DY N ++ + F + YG+G D LFN
Sbjct: 198 GVGLSVGYKHFFTKKKNQGFRYYLFYDYGYTNFGFVGNGFDGLGKMNNHLYGLGIDYLFN 257
Query: 522 FINDKNTNFLGKNNKISVGFFGGIALAGTSWLN-------SQFVNLKTISNVYSAKVNTA 574
FI++ + SVGF+ G ALAG+SW+ SQ + Y AK++T+
Sbjct: 258 FIDNAQKH-------SSVGFYVGFALAGSSWVGSGLGMWVSQMDFINNYLTDYRAKMHTS 310
Query: 575 NFQFLFNLGLRTNLARPKKKDSHHAAQHGMELGVKIPTINTNYYSF----LDTKLEYRRL 630
FQ N G+R N+ R +G E+G+KIP ++Y L+ L ++RL
Sbjct: 311 FFQIPLNFGVRVNVDR----------HNGFEMGLKIPLAVNSFYETHGKGLNASLFFKRL 360
Query: 631 YSVYLNYVFAY 641
++YV+++
Sbjct: 361 VMFNVSYVYSF 371
Score = 37.4 bits (85), Expect = 0.001
Identities = 27/82 (32%), Positives = 43/82 (51%), Gaps = 6/82 (7%)
Query: 7 TILLSLTLAASLLHAEDNGVFLSVG--YQIGEAVQ---KVKNADKVQKLSDTYEQLSRLL 61
++ LSL+L S AE+NG + SVG Y I AV+ N +++Q +S+ ++ +L
Sbjct: 11 SLFLSLSLFLSFSIAEENGAYASVGFEYSISHAVEHNNPFLNQERIQTISNAQNKIYKLN 70
Query: 62 TNDNG-TNSKTSAQAINQAVNN 82
N TN + IN A+ N
Sbjct: 71 QVKNEITNMPNTFNYINNALKN 92
>ref|NP_222838.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 286
Score = 105 bits (262), Expect = 4e-24
Identities = 79/283 (27%), Positives = 123/283 (42%), Gaps = 61/283 (21%)
Query: 393 TMQNQKNNWGNGCAGVEETLSSLKTSAAD-------------FNNQTPQINQAQNLANTL 439
T +K G++ L L T+A + + + TP + A N L
Sbjct: 31 TSPTKKGERNAAFIGIDYQLGMLSTTAQNCSHGNCNGNQSGAYGSNTPNMPTASNPTGGL 90
Query: 440 IQ-ELGNNPFRNMGMIASSTTNNGALNGLGVQVGYKQFFGEKKRWGLRYYGFFDYNHAYI 498
LG ++ + + A+NG G VGYK FF + ++G+RYYGFFD+ +Y
Sbjct: 91 THGALGTRGYKGL------SNQQYAINGFGFVVGYKHFFKKAPQFGMRYYGFFDFASSYY 144
Query: 499 KSNFFN----------SASDVWTYGVGSDLLFN--FINDKNTNFLGKNNKISVGFFGGIA 546
K +N S S ++ YG G+D+LFN N +N +F GFF G+A
Sbjct: 145 KYYTYNDYGMRDARKGSQSFMFGYGAGTDVLFNPAIFNRENLHF---------GFFLGVA 195
Query: 547 LAGTSWLNSQFVNLKTISNVYSAKVNTANFQFLFNLGLRTNLARPKKKDSHHAAQHGMEL 606
+ GTSW + + K ++ Y + +NFQ L N G+R G E+
Sbjct: 196 IGGTSWGPTNYY-FKDLAEEYRGSFHPSNFQVLVNGGIRLG-----------TKHQGFEI 243
Query: 607 GVKIPTINTNYYSF--------LDTKLEYRRLYSVYLNYVFAY 641
G+KI TI NYY+ + + R Y+ Y Y+ ++
Sbjct: 244 GLKIQTIRNNYYTASADNVPEGTTYRFTFHRPYAFYWRYIVSF 286
>ref|NP_224080.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 248
Score = 105 bits (261), Expect = 5e-24
Identities = 72/208 (34%), Positives = 105/208 (49%), Gaps = 54/208 (25%)
Query: 466 GLGVQVGYKQFFGEKKRWGLRYYGFFDYNHAYI----------KSNF-FNSAS------- 507
G G +VGYKQFFG+KK +G+RYYGFFDY H +S F +NS S
Sbjct: 57 GPGFEVGYKQFFGKKKWFGMRYYGFFDYAHNRFGVMKKGIPVGESGFIYNSFSFGGNTLT 116
Query: 508 -----------DVWTYGVGSDLLFNFINDKNTNFLGKNNKISVGFFGGIALAGTSWLNSQ 556
+++TYGVG D L+NF+N +N F GF GI LAG SW S
Sbjct: 117 ERDSYQGQYYINLFTYGVGLDTLWNFVNKENMVF---------GFVVGIQLAGDSWATSI 167
Query: 557 FVNLKT-ISNVYSAKVNTANFQFLFNLGLRTNLARPKKKDSHHAAQHGMELGVKIPTINT 615
+ + + + ++ + ANFQFL+ G+RT H A + +ELG+K+PTI
Sbjct: 168 SKEIGSYVKHHSNSSYSPANFQFLWKFGVRT----------HIAIHNSLELGIKVPTITH 217
Query: 616 NYYSFLDTK-----LEYRRLYSVYLNYV 638
+ + K + RR+Y+ ++Y+
Sbjct: 218 RLFFITNEKGYTLQADVRRVYAFQISYL 245
>ref|NP_224112.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 388
Score = 102 bits (255), Expect = 2e-23
Identities = 82/263 (31%), Positives = 112/263 (42%), Gaps = 106/263 (40%)
Query: 461 NGALNGLGVQVGYKQFFGEKKRWGLRYYGFFDYNHAYIKSNFFNSAS------------- 507
N + GLGV GYK F G+K+ +GLRYYGFFDY H +NF NS +
Sbjct: 150 NQPMYGLGVMTGYKHFVGKKRWFGLRYYGFFDYGH----TNFSNSRAANAISPFYLSDQK 205
Query: 508 -DVWTYGVGSDLLFNFINDKNTNFLGKNNKISVGFFGGIALAGTSWLNSQFVNLK----- 561
D++TYG G+D+LFN I+ K + GFF G+ AG +W N++ K
Sbjct: 206 ADMYTYGFGTDMLFNVIDKP---------KATAGFFVGVNFAGNTWTNNRVGYFKDGYVY 256
Query: 562 ---------------TIS----------------NVYS-----AKVNTANFQFLFNLGLR 585
TI+ +VY+ AKVN FQFL N+G+R
Sbjct: 257 GVNTDADAYMTNADGTITCGDTTPASCNVGINPNSVYTTGKLNAKVNHTIFQFLVNVGIR 316
Query: 586 TNLARPKKKDSHHAAQHGMELGVKIPTINTNYYSFLDTKLE------------------- 626
TN+ HG+E G+KIPT+ NY+ T +
Sbjct: 317 TNIFE----------HHGIEFGIKIPTL-PNYFFKGSTTIRAKKQGPLENGNPTTITGAE 365
Query: 627 --------YRRLYSVYLNYVFAY 641
RR YS+YL YV+ +
Sbjct: 366 TNFSLTQTLRRQYSMYLRYVYTF 388
Score = 25.8 bits (55), Expect = 3.5
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 8 ILLSLTLAASLLHAEDNGVFLSVGYQIGEAVQK 40
+L SL L L E NG F+ + ++G A QK
Sbjct: 48 LLSSLWLTNPLNAHEKNGAFVGISLEVGRADQK 80
>ref|NP_222795.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 255
Score = 97.4 bits (241), Expect = 1e-21
Identities = 74/235 (31%), Positives = 107/235 (45%), Gaps = 36/235 (15%)
Query: 423 NNQTPQINQAQNLANTLIQELGNNPFRNMGMIAS--STTNNGALNGLGVQVGYKQFFGEK 480
N T + A N GNN S +T N G + G+ GYK FFG+
Sbjct: 35 NQNTTRTPSANNNTPINTSMFGNNQAAPAQETPSVINTNNYGQMYGVDAMAGYKWFFGKT 94
Query: 481 KRWGLRYYGFFDYNHAYI-----KSNFFNSASDV--WTYGVGSDLLFNFINDKNTNFLGK 533
KR+G R YG++ YNHA + K + AS V +TYGVG D L+NF K G
Sbjct: 95 KRFGFRTYGYYSYNHANLSFVGSKLGIMDGASQVNNFTYGVGFDALYNFYESKE----GY 150
Query: 534 NNKISVGFFGGIALAGTSWLNSQFVNLKTISNV------YSAKVNTANFQFLFNLGLRTN 587
N + G F G L G S++ LK+ + SA +NT+ FQ G R+N
Sbjct: 151 N---TAGLFVGFGLGGDSFIVQGESYLKSQMQICNNTAGCSASMNTSYFQMPVEFGFRSN 207
Query: 588 LARPKKKDSHHAAQHGMELGVKIPTINTNYYS--FLDTKLE--YRRLYSVYLNYV 638
++ G+E+G K+P +Y +D ++ Y+R +S+Y NY+
Sbjct: 208 FSK----------HSGIEVGFKLPLFTNQFYKERGVDGSVDVFYKRNFSIYFNYM 252
Score = 26.9 bits (58), Expect = 1.6
Identities = 21/79 (26%), Positives = 34/79 (42%), Gaps = 6/79 (7%)
Query: 6 KTILLSLTLAASLLHAEDNGVFLSVGYQIGEAVQKVKNADKVQKLSDTYEQLSRLLTNDN 65
K I L + LA S+ AE +G FL G+Q + +N + ++ + + T+
Sbjct: 2 KKIFLGMALAFSVSMAEKSGAFLGGGFQYSNL--ENQNTTRTPSANNN----TPINTSMF 55
Query: 66 GTNSKTSAQAINQAVNNLN 84
G N AQ +N N
Sbjct: 56 GNNQAAPAQETPSVINTNN 74
>ref|NP_223363.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 270
Score = 95.9 bits (237), Expect = 3e-21
Identities = 71/211 (33%), Positives = 101/211 (47%), Gaps = 49/211 (23%)
Query: 461 NGALNGLGVQVGYKQFFGEK------KRWGLRYYGFFDYNHAYIKSNFF---NSASDVWT 511
NGALNG G+ VGYK+FF K K +G R YG FDY HA + + D+ +
Sbjct: 79 NGALNGFGLNVGYKKFFQFKSLDMTSKWFGFRVYGLFDYGHADLGKQVYAPNKIQLDMVS 138
Query: 512 YGVGSDLLFNFINDKNTNFLGKNNKISVGFFGGIALAGTSWLNS-------QFVNLK--- 561
+GVGSDLL + I+ N +F G FGG+A+ G +W +S Q + K
Sbjct: 139 WGVGSDLLADIIDKDNASF---------GIFGGVAIGGNTWKSSAANYWKEQIIEAKGPD 189
Query: 562 ----TISN---VYSAKVNTANFQFLFNLGLRTNLARPKKKDSHHAAQHGMELGVKIPTIN 614
T N YS +T FQ N G+R N+ + +G+E GV++P +
Sbjct: 190 VCTPTYCNPNAPYSTNTSTVAFQVWLNFGVRANIYK----------HNGVEFGVRVPLLI 239
Query: 615 TNYYSF--LDTKLEY--RRLYSVYLNYVFAY 641
+ S T L Y +R YS+YL Y + +
Sbjct: 240 NKFLSAGPNATNLYYHLKRDYSLYLGYNYTF 270
Score = 32.3 bits (72), Expect = 0.038
Identities = 18/37 (48%), Positives = 25/37 (66%), Gaps = 1/37 (2%)
Query: 1 MKKTKKTILLSLTLAASLLHAEDNGVFLSVGYQIGEA 37
MKK LLS L++SLL AE +GV++ YQ+G+A
Sbjct: 1 MKKFVALGLLSAVLSSSLL-AEGDGVYIGTNYQLGQA 36
>ref|NP_224150.1| putative OUTER MEMBRANE PROTEIN [Helicobacter pylori J99]
Length = 242
Score = 89.7 bits (221), Expect = 2e-19
Identities = 68/214 (31%), Positives = 98/214 (45%), Gaps = 56/214 (26%)
Query: 461 NGALNGLGVQVGYKQFFGEKKRWGLRYYGFFDYNHA---YIKSNFFNSAS---------- 507
N + G +GY+ FF +K +GLR YGFFDY HA +K+ +NS +
Sbjct: 52 NATIKGFDALLGYQFFF--EKHFGLRLYGFFDYAHANSIKLKNPNYNSEAAQVASQILGK 109
Query: 508 -----------------DVWTYGVGSDLLFNFINDKNTNFLGKNNKISVGFFGGIALAGT 550
++ TYG D++ N IN N +S+G FGGI LAG
Sbjct: 110 QEINRLTNIADPRTFEPNMLTYGGAMDVMVNVIN---------NGIMSLGAFGGIQLAGN 160
Query: 551 SWL--NSQFVNLKTISNVYSAKVNTANFQFLFNLGLRTNLARPKKKDSHHAAQHGMELGV 608
SWL F + + S K +FQFLFN+G R + + +E GV
Sbjct: 161 SWLMATPSFEGILVEQALVSKK--ATSFQFLFNVGARLRILK----------HSSIEAGV 208
Query: 609 KIPTINTN-YYSFLDTKLEYRRLYSVYLNYVFAY 641
K P + N Y + + + +RR+YS Y+NYVF +
Sbjct: 209 KFPMLKKNPYITAKNLDIGFRRVYSWYVNYVFTF 242
Score = 28.1 bits (61), Expect = 0.71
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 1 MKKTKKTILLSLTLAASLLHAED-NGVFLSVGYQIGEAVQKVKNADKVQKLSDTYEQLSR 59
MKK LL+L ++ + + D NGVFL GY G+A + Q + T +
Sbjct: 1 MKKFFSQSLLALIISMNAVSGMDGNGVFLGAGYLQGQAQMHADINSQKQATNATIKGFDA 60
Query: 60 LL 61
LL
Sbjct: 61 LL 62
>ref|NP_223299.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 307
Score = 76.3 bits (186), Expect = 2e-15
Identities = 75/267 (28%), Positives = 113/267 (42%), Gaps = 49/267 (18%)
Query: 416 KTSAADFNNQTPQINQAQN--LANT-LIQELGN--NPFRNMGMIASSTTNNGALNGL--G 468
K SA + NQ IN A+N NT I+++ N N ++ IA+ NG G+
Sbjct: 45 KASAENALNQA--INNAKNSLFPNTKAIRDVQNALNAVKDSNKIANRFAGNGGSGGIFNE 102
Query: 469 VQVGYKQFFGEKKRWGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGSDLLFNFINDKNT 528
+ +GYK F G+K+ G R+ FF Y + S + YG +DLL N+ NDK
Sbjct: 103 LSLGYKYFLGKKRIIGFRHSLFFGYQLGGVGSVPGSGLIAFLPYGFNTDLLINWTNDKRA 162
Query: 529 NFLGKNNKI------------------------------SVGFFGGIALAGTSWLNSQFV 558
+ ++ S G G+ L ++W S
Sbjct: 163 SQEYVERRVKGLSIFYKDMTGRTLDADTLKRASRHIIRKSSGLVIGMELGASTWFASN-- 220
Query: 559 NLKTISNVYSAKVNTANFQFLFNLGLRTNLAR---PKKKDSHHAAQHGMELGVKIPTINT 615
NL + V S + FQ G+R + + D ++ +ELGVK+P
Sbjct: 221 NLTPFNQVKSRTI----FQLQGKFGVRFSSDEYDIDRYGDENYLGGSSVELGVKVPAFKV 276
Query: 616 NYYS-FLDTKLEYRRLYSVYLNYVFAY 641
NYYS KL+Y+R+ SVYLNY + +
Sbjct: 277 NYYSDDYGDKLDYKRVVSVYLNYTYNF 303
Score = 39.7 bits (91), Expect = 2e-04
Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 9/136 (6%)
Query: 5 KKTILLSLTLAASL-LHAEDNGVFLSVGYQIGEAVQKVKNADKVQKLSDTYEQLSRLLTN 63
KK +LL+L+L+ S LHAE NG +L + + G +Q + + + Q N
Sbjct: 2 KKVLLLTLSLSLSFWLHAERNGFYLGLNFAEGSYIQGQGSIGEKASAENALNQAINNAKN 61
Query: 64 DNGTNSKTSAQAIN--QAVNNLNERAKTLAGGTTNSPAYQAT------LLALRSVLGLWN 115
N+K N AV + N+ A AG + + L + ++G +
Sbjct: 62 SLFPNTKAIRDVQNALNAVKDSNKIANRFAGNGGSGGIFNELSLGYKYFLGKKRIIGFRH 121
Query: 116 SMGYAVICGGYTKSPG 131
S+ + GG PG
Sbjct: 122 SLFFGYQLGGVGSVPG 137
>ref|NP_223757.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 277
Score = 72.4 bits (176), Expect = 3e-14
Identities = 65/209 (31%), Positives = 92/209 (43%), Gaps = 48/209 (22%)
Query: 460 NNGALNGLGVQVGYKQF--FGEKKRWGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGSD 517
N+ NGLGVQVGYK E K +G R+ F+D + + S S + TYG D
Sbjct: 90 NSYVSNGLGVQVGYKWVGKHEETKWFGFRWGLFYDLSASLYGSQESQSII-ISTYGTYMD 148
Query: 518 LLFNFINDKNTNFLGKNNKISVGFFGGIALAGT-SWLNSQFVNLKTISNVYSAKVNTANF 576
LL N N +K GF GIA AG L+ + + N + KVN F
Sbjct: 149 LLLNAYN---------GDKFFAGFNLGIAFAGVYDRLSDALLYQTLLQNTFGGKVNLNGF 199
Query: 577 QFLFNLGLRTNLARPKKKDSHHAAQHGMELGVKIPTINTNYYSFLDT------------- 623
QFL +LG+R + H+ Q G G+KIPT N+Y ++
Sbjct: 200 QFLVDLGVRLG-------NEHN--QFG--FGIKIPTYYFNHYYSMNNISNNSENVLKVLR 248
Query: 624 -----------KLEYRRLYSVYLNYVFAY 641
++++RR YSVY NY +++
Sbjct: 249 FLEYGINSLLYQVDFRRNYSVYFNYTYSF 277
>ref|NP_223142.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 186
Score = 66.2 bits (160), Expect = 2e-12
Identities = 52/178 (29%), Positives = 79/178 (44%), Gaps = 42/178 (23%)
Query: 464 LNGLGVQVGYKQFFGEKKRWGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGSDLLFNFI 523
L GL ++G+ F K +G R YGF D+ + S ++ +++ TYG G DL+ N I
Sbjct: 51 LYGLNFKLGFVGF--ANKWFGARVYGFLDW---FNTSGTEHTKTNLLTYGGGGDLIVNLI 105
Query: 524 NDKNTNFLGKNNKISVGFFGGIALAGTSWLNSQFVNLKTISNVYSAKVNTANFQFLFNLG 583
+K ++G GG+ LAG +W+ + VN FQFL+NLG
Sbjct: 106 ---------PLDKFALGLIGGVQLAGNTWM-------------FPYDVNQTRFQFLWNLG 143
Query: 584 LRTNLARPKKKDSHHAAQHGMELGVKIPTINTNYYSFLDTKLEYRRLYSVYLNYVFAY 641
R + + E GVK P +N + R YS Y++YVF +
Sbjct: 144 GRMRV----------GDRSAFEAGVKFPMVNQG-----SKDVGLIRYYSWYVDYVFTF 186
Score = 26.9 bits (58), Expect = 1.6
Identities = 16/31 (51%), Positives = 19/31 (60%), Gaps = 1/31 (3%)
Query: 6 KTILLSLTLAASL-LHAEDNGVFLSVGYQIG 35
K I L+L+ASL L E NG F+ GYQ G
Sbjct: 3 KRIACILSLSASLALAGEVNGFFMGAGYQQG 33
>ref|NP_223725.1| putative outer membrane protein [Helicobacter pylori J99]
Length = 751
Score = 58.5 bits (140), Expect = 5e-10
Identities = 43/142 (30%), Positives = 67/142 (46%), Gaps = 15/142 (10%)
Query: 413 SSLKTSAADFNNQTPQIN---QAQNLANTLIQELGNNPFRNMGMIASSTTNN--GALNGL 467
++L + A+ N+QT +N AQN A +++ + N S++ N + G+
Sbjct: 537 NALPINFANLNSQTSHLNAGLNAQNFATSMVSAIAQNFSTTSTTTYRSSSKNFRSPILGV 596
Query: 468 GVQVGYKQFFGEKKRWGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGSDLLFNFI---- 523
V++GY+ +F + GL YYG YN+A S YG G D+LF+FI
Sbjct: 597 NVKIGYQHYFNDYI--GLAYYGIIQYNYAQANDEKIQQLS----YGGGMDVLFDFITTYT 650
Query: 524 NDKNTNFLGKNNKISVGFFGGI 545
N K + K S G FGG+
Sbjct: 651 NKKQDHPTKKVFASSFGVFGGL 672
>ref|NP_224064.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 744
Score = 51.6 bits (122), Expect = 6e-08
Identities = 44/156 (28%), Positives = 74/156 (47%), Gaps = 25/156 (16%)
Query: 421 DFNNQTPQIN------QAQNLANTLIQELGNNPFRNMGMIASSTTNNGA------LNGLG 468
DF N + Q N Q+ A T++ + + + + T+ + L G+
Sbjct: 529 DFTNLSSQTNYLNASLNTQDFATTMLSAISQSLSSSKSSATTYRTSKTSRPFGAPLLGVN 588
Query: 469 VQVGYKQFFGEKKRWGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGSDLLFNFI----N 524
+++GY+++F + GL YG YN+A + S YGVG D+LF+FI N
Sbjct: 589 LKMGYQKYFNDYL--GLSSYGIIKYNYAQANNEKIQQLS----YGVGMDVLFDFITNYTN 642
Query: 525 DKN--TNFLGKNNKISVGFFGGI-ALAGTSWLNSQF 557
+KN +N K S+G FGG+ L + +L +Q+
Sbjct: 643 EKNPKSNLTKKVFTSSLGVFGGLRGLYNSYYLLNQY 678
>ref|NP_223450.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 278
Score = 48.1 bits (113), Expect = 7e-07
Identities = 49/200 (24%), Positives = 72/200 (35%), Gaps = 60/200 (30%)
Query: 472 GYKQFFGEKKRWGLRYYGFFDYNHAYI---------------------------KSNFFN 504
GYKQFF +K+ +G R+Y DY + + K F N
Sbjct: 109 GYKQFFPKKEHYGFRFYVSLDYAYGFFLKNKGALGDSLRASSQIPKSYREKLQRKETFIN 168
Query: 505 SASDVWTYGVGSDLLFNFINDKNTNFLGKNNKISVGFFGGIALAGTSWLNSQFVNLKTIS 564
+ YGVG+D L+ T LG N G +W F K
Sbjct: 169 AIF----YGVGADFLYK--RAFGTLILGVN------------FVGETW----FYETKIFK 206
Query: 565 NVYSAKVNTAN---FQFLFNLGLRTNLARPKKKDSHHAAQHGMELGVKIPTINTNYYSFL 621
+NT FQ + N+G R +R K +E G +IP + +Y+
Sbjct: 207 QWAKDSLNTYRPNMFQVMLNVGYRYRFSRYKN--------WAIEFGARIPFLINDYFKTP 258
Query: 622 DTKLEYRRLYSVYLNYVFAY 641
L ++R SVYL + +
Sbjct: 259 LYTLHFKRNISVYLTSTYDF 278
>ref|NP_223588.1| putative outer membrane protein [Helicobacter pylori J99]
Length = 668
Score = 45.8 bits (107), Expect = 3e-06
Identities = 40/129 (31%), Positives = 59/129 (45%), Gaps = 28/129 (21%)
Query: 433 QNLANTLIQELGNNPFRNMGMIASSTTNNGALN----------GLGVQVGYKQFFGEKKR 482
Q+LAN+++ + + SS TN+ N G+ ++GY+ +F +
Sbjct: 473 QDLANSMLSTIQKT------FVTSSVTNHHFSNASQSFRSPILGVNAKIGYQNYFNDFI- 525
Query: 483 WGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGSDLLFNFI---NDKN--TNFLGKNN-K 536
GL YYG YN+A N +YG G DLL +FI ++KN T K N
Sbjct: 526 -GLAYYGIIKYNYA----KAVNQKVQQLSYGGGIDLLLDFITTYSNKNSPTGIQTKRNFS 580
Query: 537 ISVGFFGGI 545
S G FGG+
Sbjct: 581 SSFGIFGGL 589
Score = 26.2 bits (56), Expect = 2.7
Identities = 63/292 (21%), Positives = 103/292 (34%), Gaps = 61/292 (20%)
Query: 6 KTILLSLTLAASLLHAEDNGVFLSVGYQIGEAVQKVKNADKVQKLSDTYEQLSRLLTNDN 65
+ + + L L ++L E NG F+ G++ G + + + T E+ N
Sbjct: 2 RKLFIPLLLFSALEANEKNGFFIEAGFETG-----------LLEGTQTQEKRHTTTKNTY 50
Query: 66 GTNSKTSAQAINQAVNNLNERAKTLAGGTTNSPAYQATLLALRSVLGLWNSMGYAVICGG 125
T + I + NL A+ ++ +S + L L + N + Y +
Sbjct: 51 ATYNYLPTDTILKRAANLFTNAEAISKLKFSSLSPVRVLYMYNGQLTIENFLPYNL---- 106
Query: 126 YTKSPGENNQKDFHYTDENGNGTTINCGGSTNSNGTHSSSGTNTLKADKNVSLSIEQYEK 185
NN K +TD GN TI+ G T+ + L E ++
Sbjct: 107 -------NNVK-LSFTDAQGN--TIDLG------------VIETIPKHSKIVLPGEAFDS 144
Query: 186 IHEAYQ-----------------ILSKALKQAGLAPLNSKGEKLEAHVTTSKPENNSQTK 228
+ EA+ +S Q LN+ L + P NN T
Sbjct: 145 LKEAFDKIDPYTLFLPKFEATSTSISDTNTQRVFETLNNIKTNLIMKYSNENP-NNFNTC 203
Query: 229 TTTSVIDTTNDA-QNLLTQ-AQTIVNTLKDYCPMLIAKSSSESSGAATTNAP 278
+ +T ND QN Q A+ N + + +IA S+S G A NAP
Sbjct: 204 PYNNNGNTKNDCWQNFTPQTAEEFTNLMLN----MIAVLDSQSWGDAILNAP 251
>ref|NP_223367.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 657
Score = 45.8 bits (107), Expect = 3e-06
Identities = 40/129 (31%), Positives = 59/129 (45%), Gaps = 28/129 (21%)
Query: 433 QNLANTLIQELGNNPFRNMGMIASSTTNNGALN----------GLGVQVGYKQFFGEKKR 482
Q+LAN+++ + + SS TN+ N G+ ++GY+ +F +
Sbjct: 462 QDLANSMLSTIQKT------FVTSSVTNHHFSNASQSFRSPILGVNAKIGYQNYFNDFI- 514
Query: 483 WGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGSDLLFNFI---NDKN--TNFLGKNN-K 536
GL YYG YN+A N +YG G DLL +FI ++KN T K N
Sbjct: 515 -GLAYYGIIKYNYA----KAVNQKVQQLSYGGGIDLLLDFITTYSNKNSPTGIQTKRNFS 569
Query: 537 ISVGFFGGI 545
S G FGG+
Sbjct: 570 SSFGIFGGL 578
Score = 25.4 bits (54), Expect = 4.6
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 6 KTILLSLTLAASLLHAEDNGVFLSVGYQIG--EAVQ-KVKNADKVQKLSDTYEQLSRLLT 62
+ + + L L ++L E NG F+ G++ G E Q + K + TY L
Sbjct: 2 RKLFIPLLLFSALEANEKNGFFIEAGFETGLLEGTQTQEKRHTTTKNTYATYNYLPTDTI 61
Query: 63 NDNGTNSKTSAQAINQ 78
N T+A+AI++
Sbjct: 62 LKRAANLFTNAEAISK 77
>ref|NP_224132.1| putative [Helicobacter pylori J99]
Length = 211
Score = 42.0 bits (97), Expect = 5e-05
Identities = 37/158 (23%), Positives = 72/158 (45%), Gaps = 29/158 (18%)
Query: 486 RYYGFFDYNHAYIKSNFFNSASDVWTYGVGSDLLFNFINDKNTNFLGKNNKISVGFFGGI 545
RYY F DY + + + ++++TYG G DL+ + KN F G+
Sbjct: 77 RYYFFMDYGNVILNKRT-GAQANMFTYGFGGDLIMEY---------NKNPLYVFSLFYGM 126
Query: 546 ALAGTSWL----NSQFVNLKTISNVYSAKVNTANFQFLFNLGLRTNLARPKKKDSHHAAQ 601
+A +W ++ F+ + ++ + T+NF+ L +G + HH A
Sbjct: 127 QVAENTWTISKHSANFI-IDDWRSIQGFSLKTSNFRMLGLVGFKFQTVL-----FHHDA- 179
Query: 602 HGMELGVKIPTINTNYYSFLDTKLEYRRLYSVYLNYVF 639
+E+G+K P ++F + + RL+SV++++ F
Sbjct: 180 -SIEVGIKWP------FAF-EYDSPFVRLFSVFISHTF 209
>ref|NP_223078.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 200
Score = 39.3 bits (90), Expect = 3e-04
Identities = 28/94 (29%), Positives = 41/94 (42%), Gaps = 13/94 (13%)
Query: 461 NGALNGLGVQVGYKQFFGEKKRWGL-RYYGFFDYNHAYIKSNFFNSASDVWTYGVGSDLL 519
N L G + GY+ K W RYY F DY + +N ++++TYGVG D +
Sbjct: 42 NKLLQGASILQGYE--VNPKNDWAYSRYYFFIDYGNVLF-NNDSTLQANMFTYGVGGDFM 98
Query: 520 FNFINDKNTNFLGKNNKISVGFFGGIALAGTSWL 553
+ KN FF G+ LA +W+
Sbjct: 99 VAY---------AKNPINRWAFFFGLQLAANTWI 123
>ref|NP_223759.1| putative [Helicobacter pylori J99]
Length = 267
Score = 35.8 bits (81), Expect = 0.003
Identities = 36/178 (20%), Positives = 69/178 (38%), Gaps = 24/178 (13%)
Query: 172 ADKNVSLSIEQYEKIHEAYQILSKALKQAGLAPLNSKGEKLEAHVTTSKPENNSQTKTTT 231
A +++ L +++YE+ + A +Q LN+ E +++ + K N +TTT
Sbjct: 84 AGESLKLKMKEYERFFSEFNTSMHANEQEVTNTLNANAENIKSEI---KKLENQLIETTT 140
Query: 232 SVIDTTNDAQNLLTQAQTIVNTLKDYCPMLIAKSSSESSGAATTNAPSWQTAGGGKNSCA 291
LLT Q +N +D I K+ ++S A T Q N +
Sbjct: 141 ----------RLLTSYQIFLNQARDNANNQITKNKTQSLEAIT------QAKNNANNEIS 184
Query: 292 TFGAEFSAASDMINNAQKIVQETQQLSANQPKNITQPHNLNLNTPSSLTALAQKMLKN 349
+ + N + ++S NQ + IT + + + + A Q+ + N
Sbjct: 185 N-----NQTQAITNITEAKTNANNEISNNQTQAITNINEAKESATTQINANKQEAINN 237
>ref|NP_223662.1| putative [Helicobacter pylori J99]
Length = 668
Score = 34.3 bits (77), Expect = 0.010
Identities = 50/223 (22%), Positives = 83/223 (36%), Gaps = 26/223 (11%)
Query: 145 GNGTTINCGGSTN----SNGTHSSSGTNTLKADKNVSLSIEQYEKIHEA----YQILSKA 196
GNG T N STN +NG+ S++ TN + N S QY K+ E L
Sbjct: 299 GNGDTNNSNNSTNTTSPTNGSSSNNATNPSSQENNYS---SQYCKVPELSPNNTMKLDVI 355
Query: 197 LKQAGLAPLNSKGEKLEAHVTTSKPENNSQTKTTTSVIDTTNDAQNL-----LTQAQTIV 251
K +N+ + + + +T +D N QN+ L AQ +
Sbjct: 356 AKDGSCISMNALRDDTKCAYRYDFEAGKAIKQTQYYYVDRENKTQNIGGCVDLQGAQYAM 415
Query: 252 NTLKDYCPMLIAKSSSESSGAATTNAPSWQTAGGGKNS---CATFGAEFSAASDMINNAQ 308
KD + +S + G T + G ++ A ++++ D I +
Sbjct: 416 QLYKDDSKCALQTTSDKGYGMGKTQTFQTEIVFRGMDNLIHVAVPCSDYARVQDRIVRYE 475
Query: 309 KIVQETQQLSA------NQPKNITQPHNLNLNTPSSLTALAQK 345
K +TQ L+ N P N + LN + L++ Q+
Sbjct: 476 K-NDKTQTLTPIVDQYYNDPNNPNKQEILNRGIATQLSSQYQE 517
>ref|NP_223199.1| cag island protein [Helicobacter pylori J99]
Length = 280
Score = 33.5 bits (75), Expect = 0.017
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
Query: 115 NSMGYAVICGGYTKSPGENNQKDFHYTDENGNGTTINCGGSTNSNGTHSSSGTNTLKADK 174
N G +I Y +P N K+ T + G+ G +T + + SG N +
Sbjct: 127 NQKGVVMIASNYNDNP---NNKEKPQTFDVLQGSQPMLGANTKNLHGYDVSGANNKQVIN 183
Query: 175 NVSLSIEQYEKIHEAYQILSKALKQAGLAPLNSKGEKLE 213
V+ Q EKI++ Y+ L + +Q N++ E LE
Sbjct: 184 EVAREKAQLEKINQYYKTLLQDKEQEYTTRKNNQREILE 222
>ref|NP_222995.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2902
Score = 32.3 bits (72), Expect = 0.038
Identities = 39/167 (23%), Positives = 60/167 (35%), Gaps = 17/167 (10%)
Query: 52 DTYEQLSRLLTNDNGTN-SKTSAQAINQAVNNLNERAKTLAGGTTNSPAYQATLLALRSV 110
D QL++L+T + N ++ A N V N N TL G T +
Sbjct: 1718 DALNQLTKLITPSDWKNINELIDNANNSVVQNFNNG--TLIIGATKIGQTDTNSAVVFGG 1775
Query: 111 LGLWNSMGYA-VIC----GGYTKSPGENNQKDFHYTDENGNGTTINCGGSTNSNGTHSSS 165
LG Y ++C G Y E+ D Y D N I G+ S +
Sbjct: 1776 LGYQKPCDYTDIVCQKFRGTYLGQLLESISADLGYIDTTFNAKEIYLTGTLGSGNAWGTG 1835
Query: 166 GTNTLKADKNVSLSIEQYEKIHE---------AYQILSKALKQAGLA 203
G+ ++ + SL + Q + + ++K QAGLA
Sbjct: 1836 GSASVTFNSQTSLILNQANIVSSQTDGIFSMLGQEGINKVFNQAGLA 1882
>ref|NP_223574.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2399
Score = 31.6 bits (70), Expect = 0.064
Identities = 42/172 (24%), Positives = 69/172 (39%), Gaps = 17/172 (9%)
Query: 297 FSAASDMINNAQKIVQETQQLSANQPKNITQPHNLNLNTPSSLTALAQKMLKNAQSQAEI 356
F+ + + NNA + Q + + NL+L+ S L A N S
Sbjct: 873 FNGDTTLQNNANITLGNKSQAAFKNSLTLDNNSNLSLDNQSVLNANGTSAFNNQAS---- 928
Query: 357 LKLANQVESDFNKL--SSGHLK-DYIGKCDASAISSANMTMQNQKNNWGNGCAGVEETLS 413
L + N ++ F+ L + G L + K +AS+ S +N T N ++ L+
Sbjct: 929 LNIYNGSQAAFSSLFFNGGTLSLNANSKLNASSASFSNNTTINLDDS----------VLN 978
Query: 414 SLKTSAADFNNQTPQINQAQNLANTLIQELGNNPFRNMGMIASSTTNNGALN 465
+ TS+ + N +QA NT I N + ++ T NGALN
Sbjct: 979 ANNTSSLNANINFQGASQADFGGNTTIDTASFNFDSASSLNFNNLTANGALN 1030
Score = 27.3 bits (59), Expect = 1.2
Identities = 15/42 (35%), Positives = 20/42 (46%), Gaps = 1/42 (2%)
Query: 494 NHAYIKSNFFNSASDVWTYG-VGSDLLFNFINDKNTNFLGKN 534
N A ++FN S + VG DL N + DK F+G N
Sbjct: 2301 NFALESRHYFNKNSYYFVIADVGRDLFINSMGDKMVRFIGNN 2342
>ref|NP_223274.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 3194
Score = 31.2 bits (69), Expect = 0.084
Identities = 107/513 (20%), Positives = 173/513 (32%), Gaps = 79/513 (15%)
Query: 141 TDENGNGTTINCGGSTNSNGTHSSSGTNTLKADKNVSLSIEQYEKIHEAYQILSKALKQA 200
T EN + + N NGT + +G + L + N +S Q + +
Sbjct: 1559 TLENASSLSFYNDSVANFNGTTAFNGVSYLNLNPNAQVSFNQAN--FNNANVTFYGIPLF 1616
Query: 201 GLAP--------LNSKGEKLEAHVTTSKPENNSQTKTTTSVIDTTNDAQNLLTQAQTIVN 252
G P +N KG+ T + N + N NL +Q N
Sbjct: 1617 GKTPNFGNSVRLINFKGDAKFNQATLNLRAKNIHLNFQGASTFENNSTMNLAESSQASFN 1676
Query: 253 TLKDYCPMLIAKSSSESSGAATTNAPSWQTAGGGKNSCATFGAEFSAASDMINNAQKIVQ 312
L S E N S + G NS F A NN+Q +
Sbjct: 1677 AL-----------SVEGETNFNLNGSSLLSFNG--NSVFNAPVNFYA-----NNSQ--IS 1716
Query: 313 ETQQLSANQPKNITQPHNLNLNTPSSLTALAQKMLKNAQSQAEILKLANQVESDFNKLSS 372
T + N + +N LN S L A +L N + LA + +F+ S
Sbjct: 1717 FTHSATFNADASFDLGNNSTLNFQSVLLNSALNLLGNGGN-----NLAINAKGNFSFGSQ 1771
Query: 373 GHLK-DYIGKCDASAISSANMTMQNQKNNWGNGCAGVEE-TLSSLKTSAAD--FNN--QT 426
G L Y+ +S +Q Q + G G E+ ++ AD FNN +
Sbjct: 1772 GILNLSYMNLFGGDKKASVYDVLQAQNIDGLRGNNGYEKIRFYGIQIEKADYSFNNGVHS 1831
Query: 427 PQINQAQNLANTLIQELGNNPFRNMGMIASSTTNNGALNGLGVQVGYKQF-FGEKKRWGL 485
N T+ + L NN + + + + +NN N Y+Q + E +
Sbjct: 1832 WSFTNPLNTTETITETLHNNRLK-VQISQNGASNNAMFNLAPSLYDYQQNPYDESEN--- 1887
Query: 486 RYYGFFDYNHAYIKSNFFNSASDVWTYGVGSDL--LFNFINDKNTNFLGKNNKISVGFFG 543
YNH K+ + +S + +G +++ +N N N IS
Sbjct: 1888 ------SYNHTSDKAGTYYLSSSIKGFGKNNEIPGTYNAQNQPLQALHIYNQAISKQDLN 1941
Query: 544 GIALAGTSW-----------------LNS--QFVNLKTISNVYSAKVNTANFQFLFNLGL 584
IA G + LNS F + +I Y +N AN++ L +
Sbjct: 1942 MIASLGKEFLPKVAKLIASGALDNLNLNSPDSFETIFSILKEYGITLNQANWKSLLKI-- 1999
Query: 585 RTNLARPKKKDSHHAAQHGMELG-VKIPTINTN 616
+ ++H +Q + +G +K NTN
Sbjct: 2000 ---INNFSNTANYHFSQGSLVVGAIKEGQTNTN 2029
Score = 29.6 bits (65), Expect = 0.24
Identities = 15/35 (42%), Positives = 21/35 (59%), Gaps = 1/35 (2%)
Query: 501 NFFNSASDVWTYG-VGSDLLFNFINDKNTNFLGKN 534
++FN+ S + G VG DLL N + DK F+G N
Sbjct: 3103 HYFNTNSYFYAIGGVGRDLLVNSMGDKLVRFIGNN 3137
Score = 28.9 bits (63), Expect = 0.42
Identities = 41/185 (22%), Positives = 71/185 (38%), Gaps = 31/185 (16%)
Query: 387 ISSANMTMQNQKNNWGNGCAGVEETLSSLKTSAADFNNQTPQINQAQNL-ANTLIQELGN 445
++ AN + N K N +L + A+F+NQTP + NL AN + + G+
Sbjct: 1017 LNIANANLNNDKAGLQNSWMNFIVNNGNLNVTNANFSNQTP--HGGFNLKANNITWDKGS 1074
Query: 446 -NPFRNMGMIASSTTNNGAL-------NGLGVQVGYKQFFGEKKRWGLRYYGFFDYN--- 494
+ N G+ ++ N + NG + G + G + ++ N
Sbjct: 1075 VSGGGNFGVDNANANGNAVIKNVNFSDNGTLIYKGGENSAGNSLTLENNTFNSYNINAKA 1134
Query: 495 -HAYIKSNFFNSASDVWTYGVGSDLLFNFINDKNTNFLGKNNKISVGFF----GGIALAG 549
+ +N FNS S ++F + KN F G N I+ F G +++
Sbjct: 1135 QNLIFNNNSFNSGS------------YSFNDTKNVTFKGTNTLINSDPFSRLKGSVSIDN 1182
Query: 550 TSWLN 554
S N
Sbjct: 1183 NSIFN 1187
Score = 28.9 bits (63), Expect = 0.42
Identities = 113/538 (21%), Positives = 173/538 (32%), Gaps = 114/538 (21%)
Query: 118 GYAVICGGYTKSPGENNQKDFHYTDENGNGTTINCGGSTNSNGTHSSSGTNTLKADKNVS 177
G+ V+ T + G N +F + + + NG T G + N+NG + G N + +
Sbjct: 223 GFNVMGRKITYNGGSVNGGNFGFDNVDSNGATTISGVTFNNNGALTYKGGNGIGGSITFT 282
Query: 178 LSIEQYEKIHEAYQILSKALKQAGLAPLNSKGEKLEAHVTTSKPENNSQTKTTTSVIDTT 237
S + K++ LN+ S P N+ T +++
Sbjct: 283 NSNINHYKLN-----------------LNANSVTFNNSTLGSMPNGNANTIGNAYILNAN 325
Query: 238 NDAQNLLT-----------------QAQTIVNTLKDYCPMLIAKSSSESSGAATTNAPSW 280
N N LT Q T +N P + + A N ++
Sbjct: 326 NITFNNLTFNGGWFVFNRSDAHVNFQGTTTINNPTS--PFVNMTGKVTINPNAIFNIQNY 383
Query: 281 QTAGGGKNSCATFGAEF-SAASDMINNAQKIVQ-ETQQLSANQPKNITQPHN-----LNL 333
G N+ F + + A D +NN I++ + Q + + KN T +N +
Sbjct: 384 TPTIG--NAYTLFSMKNGNIAYDDVNNLWNIIRLKNTQATKDNSKNATSNNNTHTYYVTY 441
Query: 334 NTPSSLTALAQK------MLKNAQSQAEILKLANQVESDFNKLSSGHLKDYIGKCDASAI 387
N +L Q +L++ A L N V N + ++ D + D
Sbjct: 442 NLGGTLYHFRQIFSPDSIVLQSVYYGANNLYYTNSVNIHDNVFNLKNIND--DRADT--- 496
Query: 388 SSANMTMQNQKNNWGNGCAGVEETLSSLKTSAADFNNQTPQINQAQNLANTLIQELGNNP 447
+ N N W A +T K SA FN TP N A +N+ ++ G
Sbjct: 497 ----IFYLNGLNTWNYTQARFAQTYGG-KNSALVFNATTPWANGAIPKSNSTVRFGGYEG 551
Query: 448 FR--NMGMIASSTT------------NNGALNGLGVQVGY----------KQFFGEKKRW 483
G I + T NGA G G + + F K
Sbjct: 552 VNWGKTGYITGTFTADRVYITGNMMSGNGAQTGGGATLNFVGATEINIAGATFKNLKTTS 611
Query: 484 GLRYYGFFDYNHAYIKSNFFNSASDV--WTYGVGSDLLFNFIND---------------- 525
Y F + S SD WT G G D N + D
Sbjct: 612 QNSYMTFMALGNGSGSGKINVSQSDFYDWTDG-GYDFTGNGVFDSVNFNKAYYKFQGAEN 670
Query: 526 ----KNTNFLGKNNKISVGFFGGIALAGTSWLNSQFVNLKTISNVYSA-KVNTANFQF 578
KNTNFL N K F G S LN ++N ++ K N +F F
Sbjct: 671 SYNFKNTNFLAGNFK-----FQGKTTIEKSVLNDASYAFDGVNNAFNEDKFNGGSFNF 723
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 29.3 bits (64), Expect = 0.32
Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 8/96 (8%)
Query: 144 NGNGTTINCGGSTN--SNGTHSSSGTNTLKADKNVSLSIEQYEKIHEAYQILSKALKQAG 201
NG+G T N NG + + N SL IE Y K + Q+ + +K G
Sbjct: 51 NGSGKTTTSSFLKNLAENGIEDKFANSKIAWYNNESLKIEVYNKQFKEEQLRNSQVK--G 108
Query: 202 LAPLNSKG----EKLEAHVTTSKPENNSQTKTTTSV 233
+ L K EK+E+ + EN + K S+
Sbjct: 109 IFTLGKKTNENLEKIESKKESINKENEKKIKNEASL 144
>ref|NP_223999.1| putative [Helicobacter pylori J99]
Length = 464
Score = 28.1 bits (61), Expect = 0.71
Identities = 20/63 (31%), Positives = 30/63 (46%), Gaps = 1/63 (1%)
Query: 410 ETLSSLKTSAADFNNQTPQINQAQNLANTLIQELGNNPFRNMGMIASSTTNNG-ALNGLG 468
E L + A DF+ + P++ ANTLI G N+G +A + +G L GL
Sbjct: 359 ELLDNKLEIARDFSQKYPKVVLLLKGANTLIAHQGRVFINNLGSVALAKAGSGDVLAGLI 418
Query: 469 VQV 471
V +
Sbjct: 419 VSL 421
>ref|NP_224083.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 678
Score = 27.7 bits (60), Expect = 0.93
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 362 QVESDFNKLSSGHLKDYIGKCDASAISSANMTMQNQKNNWGNGCAGVEETLSSLKTSAAD 421
Q SD + LS H D+I + D ++S ++ +K N +E+ L L + D
Sbjct: 170 QAYSDLSFLSRKHFNDFIKRVDTLSLSDEDLERIREKKN-----QEIEDCLMQLNNNIYD 224
Query: 422 -FNNQTPQINQAQNLANTLIQELG 444
N + N+ + ++I LG
Sbjct: 225 KEKNFLSEHNRVYLVIASIIANLG 248
>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN
[Helicobacter pylori J99]
Length = 1167
Score = 26.9 bits (58), Expect = 1.6
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 398 KNNWGNGCAGVEETLSSLKTSAADFNNQTPQINQAQNLANTLIQELGNNPFRNMGMIASS 457
KN + EETL +LK S D I++ +NL N + E N ++ + +
Sbjct: 709 KNGKNKDFSKAEETLKALKGSVKDLGINPEWISKVENL-NAALNEFKNGKNKDFSKVTQA 767
Query: 458 TTN 460
++
Sbjct: 768 KSD 770
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 26.9 bits (58), Expect = 1.6
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 42 KNADKVQKLSDTYEQLSRLL-TNDNGTNSKTSAQAINQAVNNLNERAK 88
K K+Q++ + E L++L +N N TN+ SA ++ A ++E K
Sbjct: 153 KAKQKLQEIQKSREALNKLTQSNTNTTNNANSASNVSNAKKEISEVKK 200
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 26.6 bits (57), Expect = 2.1
Identities = 20/84 (23%), Positives = 39/84 (45%), Gaps = 10/84 (11%)
Query: 501 NFFNSASDVWTYGVGSDLLFNFINDKNTNFLGKNNKISVGFFGGIALAGTSWLNSQ---- 556
+F+NS +D++TY L F+ + +K + +NK + +G WL +
Sbjct: 843 DFYNSTADIYTYFFA--LSFHLLREKGFSAFITSNKYARAKYGAKL---REWLLKKTTLV 897
Query: 557 -FVNLKTISNVYSAKVNTANFQFL 579
++ L + SA V+T+ F+
Sbjct: 898 SYMELNALKVFESAAVDTSIIHFI 921
>ref|NP_223994.1| putative [Helicobacter pylori J99]
Length = 168
Score = 25.8 bits (55), Expect = 3.5
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 413 SSLKTSAADFNNQTPQINQAQNLANTLIQE---LGNNPFRNMGMIASSTTNN 461
SSLKT+ + NQ +I ++ + ++E N F++MG A+S N
Sbjct: 78 SSLKTTLSHLYNQLQEIQKSMDKERDYLEEKIITLENKFKDMGHYAASDEVN 129
>ref|NP_223331.1| putative [Helicobacter pylori J99]
Length = 1167
Score = 25.8 bits (55), Expect = 3.5
Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Query: 367 FNKLSSGHLKDYIGKC-DASAISSANMTMQNQKNNWGNGCAGVEETLSSLKTSAADFNNQ 425
F+ + ++K+ I K D + +++ ++ + + N S+KT AA +Q
Sbjct: 346 FDAIFGDNIKNPIAKALDKMVLKLSDLGLEGETKDLKN-------LYESVKTEAARAKSQ 398
Query: 426 TPQINQAQNLANTLIQELGNNPFRNMGMI 454
Q +NL NT +E +G++
Sbjct: 399 KSQQELIKNLYNTFFKEAFRKQSEKLGIV 427
>ref|NP_223090.1| putative [Helicobacter pylori J99]
Length = 440
Score = 25.8 bits (55), Expect = 3.5
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 512 YGVGSDLLFNFINDKNTNFLGKNN-KISVGFFGGIALAGT-----SWLNSQFVNLKTISN 565
YG+G + + D + +G + K+ +G G+ L G WLN Q++ I+
Sbjct: 372 YGLGLCVFLAHLKDDES--VGSSGLKLGIGLHLGMLLQGVFVRPNEWLNEQWIKTNIIAP 429
Query: 566 VYSAK 570
+ AK
Sbjct: 430 IEQAK 434
>ref|NP_224013.1| putative ENDONUCLEASE [Helicobacter pylori J99]
Length = 287
Score = 25.4 bits (54), Expect = 4.6
Identities = 17/55 (30%), Positives = 25/55 (44%), Gaps = 6/55 (10%)
Query: 301 SDMINNAQKIVQETQQLSANQPK------NITQPHNLNLNTPSSLTALAQKMLKN 349
+DM++N K + N+ K N T+ HN N LT + K+LKN
Sbjct: 20 ADMLDNFTKAINSYTAKKLNEIKDQVNSANPTKNHNPTHNANGMLTNIDCKVLKN 74
Score = 24.6 bits (52), Expect = 7.9
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 10/76 (13%)
Query: 546 ALAGTSWLNSQFVN--LKTISNVYSAKVNTANFQFLFNLGLRTNLARPKKKDSHHAAQHG 603
+L SWL + ++ K I++ + K+N Q N A P K + +G
Sbjct: 11 SLIAMSWLQADMLDNFTKAINSYTAKKLNEIKDQ--------VNSANPTKNHNPTHNANG 62
Query: 604 MELGVKIPTINTNYYS 619
M + + N+YS
Sbjct: 63 MLTNIDCKVLKNNFYS 78
>ref|NP_223945.1| 50S RIBOSOMAL PROTEIN L5 [Helicobacter pylori J99]
Length = 181
Score = 25.4 bits (54), Expect = 4.6
Identities = 11/40 (27%), Positives = 20/40 (49%)
Query: 583 GLRTNLARPKKKDSHHAAQHGMELGVKIPTINTNYYSFLD 622
G + + + KK + + GM +G K+ N Y+FL+
Sbjct: 62 GQKAVITKAKKSVAGFKIREGMAVGAKVTLRNKRMYNFLE 101
>ref|NP_223643.1| putative [Helicobacter pylori J99]
Length = 338
Score = 25.4 bits (54), Expect = 4.6
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 303 MINNAQKIVQETQQLSANQPKNITQPHNLNLNTPSSLTALAQKMLKNAQSQAEILK 358
MI+ Q I+ E L P+N HNL T + T Q +N++S+ +LK
Sbjct: 15 MIDYLQNILMEMGGLKQEPPQNSNYSHNLE-ETNAQRT---QSTQENSESKEALLK 66
>ref|NP_222816.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 564
Score = 25.4 bits (54), Expect = 4.6
Identities = 21/127 (16%), Positives = 52/127 (40%), Gaps = 15/127 (11%)
Query: 310 IVQETQQLSANQPKNITQPHNLNLNTPSSLTALAQKMLKNAQSQAEILKLANQVESDFNK 369
+ E + L+ K++ + ++ + + ++ +M N+Q + ++ V+ + K
Sbjct: 432 VADEVRNLAGRTQKSLAEINSTIMVIVQEINDVSSQMNLNSQKMERLSDMSKSVQETYEK 491
Query: 370 LSSGHLKDYIGKCDASAISSANMTMQ------NQKNNWGNGCAGVEETLSSLKTSAADFN 423
+SS +S + +N +M +Q + A VE+ S ++D
Sbjct: 492 MSSNL---------SSVVLDSNQSMDDYAKSGHQIEAMVSDFAEVEKVASKTLADSSDIL 542
Query: 424 NQTPQIN 430
N T ++
Sbjct: 543 NITTHVS 549
>ref|NP_224093.1| putative [Helicobacter pylori J99]
Length = 86
Score = 24.6 bits (52), Expect = 7.9
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 21/82 (25%)
Query: 302 DMINNAQKIVQETQQLSANQPKNITQPH--------------NLNLNTPSSL--TA---- 341
D + +K Q+ + + N PK + H NL+L L TA
Sbjct: 3 DELFETEKAPQKNAKNAKNAPKKSFEEHVHSLERVIDRLNDPNLSLKDGMDLYKTAMQEL 62
Query: 342 -LAQKMLKNAQSQAEILKLANQ 362
LAQK+L+NA S+ E L+ N+
Sbjct: 63 FLAQKLLENAYSEYEKLQTPNK 84
>ref|NP_223829.1| CARBONIC ANHYDRASE [Helicobacter pylori J99]
Length = 247
Score = 24.6 bits (52), Expect = 7.9
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 5 KKTILLSLTLAASLLHAED 23
KKT L++L L ASL+ AE+
Sbjct: 2 KKTFLIALALTASLIGAEN 20
>ref|NP_223273.1| putative [Helicobacter pylori J99]
Length = 189
Score = 24.6 bits (52), Expect = 7.9
Identities = 22/97 (22%), Positives = 43/97 (43%), Gaps = 16/97 (16%)
Query: 473 YKQF-FGEKKRWGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGSDLLFNFINDKNTNFL 531
YK++ FG G+ Y F+ NH +K++ F + ++ G+GS +
Sbjct: 105 YKKYSFGVYGGLGIGY--FYQSNHLGMKNSSFMGYNGLFNVGLGST-------------I 149
Query: 532 GKNNKISVGFFGGIALAGTSWLNSQFVNLKTISNVYS 568
+++++ +G + S+ NS F+ I YS
Sbjct: 150 DRHHRVELGAKIPFSKTRNSFKNSYFLESVFIHAAYS 186
>ref|NP_223070.1| putative [Helicobacter pylori J99]
Length = 272
Score = 24.6 bits (52), Expect = 7.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 553 LNSQFVNLKTISNVYSAKVNTANFQ 577
L + + L+T N YSAK NFQ
Sbjct: 105 LQNDLIFLRTKRNTYSAKTEHENFQ 129
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.311 0.126 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 670,820
Number of Sequences: 1491
Number of extensions: 32196
Number of successful extensions: 324
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 95
Number of HSP's gapped (non-prelim): 116
length of query: 641
length of database: 494,079
effective HSP length: 84
effective length of query: 557
effective length of database: 368,835
effective search space: 205441095
effective search space used: 205441095
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.6 bits)