BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644749|ref|NP_206919.1| hypothetical protein
[Helicobacter pylori 26695]
(461 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223830.1| putative [Helicobacter pylori J99] 475 e-136
ref|NP_222831.1| putative [Helicobacter pylori J99] 395 e-111
ref|NP_223025.1| putative [Helicobacter pylori J99] 76 2e-15
ref|NP_222772.1| putative [Helicobacter pylori J99] 59 3e-10
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 59 3e-10
ref|NP_223176.1| putative [Helicobacter pylori J99] 58 4e-10
ref|NP_223788.1| putative [Helicobacter pylori J99] 55 3e-09
ref|NP_223706.1| histidine kinase [Helicobacter pylori J99] 50 9e-08
ref|NP_223515.1| putative [Helicobacter pylori J99] 50 9e-08
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 50 9e-08
ref|NP_222774.1| putative [Helicobacter pylori J99] 50 9e-08
ref|NP_223773.1| putative [Helicobacter pylori J99] 49 2e-07
ref|NP_222894.1| putative [Helicobacter pylori J99] 49 2e-07
ref|NP_223195.1| cag island protein [Helicobacter pylori J99] 48 6e-07
ref|NP_223889.1| putative [Helicobacter pylori J99] 45 3e-06
ref|NP_223189.1| cag island protein [Helicobacter pylori J99] 45 5e-06
ref|NP_223610.1| putative [Helicobacter pylori J99] 44 1e-05
ref|NP_223415.1| putative [Helicobacter pylori J99] 41 6e-05
ref|NP_223787.1| putative [Helicobacter pylori J99] 40 1e-04
ref|NP_223761.1| putative [Helicobacter pylori J99] 40 1e-04
ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEI... 40 2e-04
ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99] 39 2e-04
ref|NP_223770.1| putative [Helicobacter pylori J99] 39 3e-04
ref|NP_223642.1| putative [Helicobacter pylori J99] 39 4e-04
ref|NP_223574.1| putative vacuolating cytotoxin (VacA) para... 39 4e-04
ref|NP_223158.1| putative [Helicobacter pylori J99] 39 4e-04
ref|NP_223895.1| RIBOSOME RECYCLING FACTOR (RIBOSOME RELEAS... 38 6e-04
ref|NP_223617.1| putative [Helicobacter pylori J99] 37 8e-04
ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori... 37 0.001
ref|NP_223645.1| putative [Helicobacter pylori J99] 37 0.001
ref|NP_223625.1| putative [Helicobacter pylori J99] 37 0.001
ref|NP_222840.1| putative [Helicobacter pylori J99] 35 0.003
ref|NP_223247.1| putative SIDEROPHORE-MEDIATED IRON TRANSPO... 35 0.004
ref|NP_223159.1| putative [Helicobacter pylori J99] 35 0.004
ref|NP_223054.1| septum formation protein [Helicobacter pyl... 35 0.004
ref|NP_224041.1| putative [Helicobacter pylori J99] 35 0.005
ref|NP_223561.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 34 0.007
ref|NP_223659.1| putative [Helicobacter pylori J99] 34 0.009
ref|NP_223405.1| putative [Helicobacter pylori J99] 34 0.009
ref|NP_223560.1| putative [Helicobacter pylori J99] 33 0.012
ref|NP_222882.1| putative PEPTIDYL-PROLYL CIS-TRANS ISOMERA... 33 0.012
ref|NP_222874.1| putative [Helicobacter pylori J99] 33 0.012
ref|NP_223322.1| putative [Helicobacter pylori J99] 33 0.015
ref|NP_223759.1| putative [Helicobacter pylori J99] 33 0.020
ref|NP_222962.1| putative [Helicobacter pylori J99] 32 0.034
ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [He... 32 0.034
ref|NP_224131.1| putative [Helicobacter pylori J99] 32 0.044
ref|NP_223684.1| METHIONYL-TRNA SYNTHETASE [Helicobacter py... 32 0.044
ref|NP_223520.1| putative [Helicobacter pylori J99] 32 0.044
ref|NP_223629.1| putative [Helicobacter pylori J99] 31 0.058
ref|NP_223283.1| DNA MISMATCH REPAIR PROTEIN [Helicobacter ... 31 0.058
ref|NP_223664.1| putative [Helicobacter pylori J99] 30 0.099
ref|NP_223444.1| putative TYPE I RESTRICTION ENZYME (SPECIF... 30 0.099
ref|NP_223038.1| putative [Helicobacter pylori J99] 30 0.099
ref|NP_223569.1| putative IRON-REGULATED OUTER MEMBRANE PRO... 30 0.17
ref|NP_223427.1| putative PROBABLE N-ACETYLMURAMOYL-L-ALANI... 30 0.17
ref|NP_222954.1| putative [Helicobacter pylori J99] 30 0.17
ref|NP_223204.1| cag island protein [Helicobacter pylori J99] 29 0.22
ref|NP_223534.1| putative [Helicobacter pylori J99] 29 0.29
ref|NP_223325.1| RIBONUCLEASE III [Helicobacter pylori J99] 29 0.29
ref|NP_223219.1| putative [Helicobacter pylori J99] 29 0.29
ref|NP_222961.1| putative [Helicobacter pylori J99] 29 0.29
ref|NP_222832.1| PHOSPHOENOLPYRUVATE SYNTHASE [Helicobacter... 29 0.29
ref|NP_222782.1| putative [Helicobacter pylori J99] 29 0.29
ref|NP_223915.1| putative [Helicobacter pylori J99] 28 0.38
ref|NP_223885.1| 30S RIBOSOMAL PROTEIN S6 [Helicobacter pyl... 28 0.49
ref|NP_223641.1| putative [Helicobacter pylori J99] 28 0.49
ref|NP_224039.1| putative histidine and glutamine-rich meta... 28 0.64
ref|NP_223039.1| putative [Helicobacter pylori J99] 28 0.64
ref|NP_224062.1| putative [Helicobacter pylori J99] 27 0.84
ref|NP_223199.1| cag island protein [Helicobacter pylori J99] 27 1.1
ref|NP_222780.1| putative [Helicobacter pylori J99] 27 1.1
ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATE... 27 1.4
ref|NP_223108.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 27 1.4
ref|NP_223994.1| putative [Helicobacter pylori J99] 26 1.9
ref|NP_223639.1| putative [Helicobacter pylori J99] 26 1.9
ref|NP_223386.1| putative [Helicobacter pylori J99] 26 1.9
ref|NP_223137.1| putative [Helicobacter pylori J99] 26 1.9
ref|NP_223661.1| putative [Helicobacter pylori J99] 26 2.4
ref|NP_223477.1| putative [Helicobacter pylori J99] 26 2.4
ref|NP_223965.1| putative [Helicobacter pylori J99] 25 3.2
ref|NP_223490.1| putative [Helicobacter pylori J99] 25 3.2
ref|NP_223180.1| putative [Helicobacter pylori J99] 25 3.2
ref|NP_223375.1| putative [Helicobacter pylori J99] 25 4.2
ref|NP_222851.1| A/G-SPECIFIC ADENINE GLYCOSYLASE [Helicoba... 25 4.2
ref|NP_224180.1| putative [Helicobacter pylori J99] 25 5.4
ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobac... 25 5.4
ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter py... 25 5.4
ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori... 25 5.4
ref|NP_223387.1| putative [Helicobacter pylori J99] 25 5.4
ref|NP_224152.1| DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N... 24 7.1
ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT ... 24 7.1
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 24 9.3
>ref|NP_223830.1| putative [Helicobacter pylori J99]
Length = 383
Score = 475 bits (1223), Expect = e-136
Identities = 241/298 (80%), Positives = 260/298 (86%), Gaps = 11/298 (3%)
Query: 164 EQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKT 223
+Q +++ Q +++ E + + + + EQE+QKT EQ++QKTEQEKQKT
Sbjct: 97 DQSKKEVAQAQKEAENARDRANKSGIELEQEEQKT-----------EQEKQKTEQEKQKT 145
Query: 224 EQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDLVKYAEQN 283
EQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDLV AEQN
Sbjct: 146 EQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDLVNKAEQN 205
Query: 284 CQENHNQFFIKKLGIKGGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPHSQRGSKAQ 343
CQENHNQFFIKKLGIK GIAIE+EAECKTPKP KTNQTPIQPKHLPNSKQPHSQRGSKAQ
Sbjct: 206 CQENHNQFFIKKLGIKAGIAIEIEAECKTPKPTKTNQTPIQPKHLPNSKQPHSQRGSKAQ 265
Query: 344 EFIAYLQKELEFLPYSQKAIAKQVNFYKPSSIAYLELDPRDFKVTEEWQKENLKIRSKAQ 403
E IAYLQKELE LPYSQKAIAKQV+FY+PSSIAYLELDPRDF TEEWQKENLKIRSKAQ
Sbjct: 266 ELIAYLQKELESLPYSQKAIAKQVDFYRPSSIAYLELDPRDFNATEEWQKENLKIRSKAQ 325
Query: 404 AKMLEMRDLKPDPQAHLPTSQSLLFVQKIFADVNKEIEAVANTEKKAEKAGYGYSKRM 461
AKMLEMR LKPDPQAHL TSQSLL VQKIFADV+KEI+ VANTEKK EKAGYGYSKRM
Sbjct: 326 AKMLEMRSLKPDPQAHLSTSQSLLLVQKIFADVSKEIKVVANTEKKVEKAGYGYSKRM 383
Score = 336 bits (862), Expect = 6e-94
Identities = 202/388 (52%), Positives = 248/388 (63%), Gaps = 37/388 (9%)
Query: 1 MPVIRVLVMLATMMMKLVKTAKEKKVFKNVGMSIMGIAFWEAIKDSIKKQIKKSNWICGN 60
MPVIRVLVMLATMMMKLVKTAKEKKVFKNVG+SIMGIAFWEAIKDSIKKQIKKS+WICGN
Sbjct: 1 MPVIRVLVMLATMMMKLVKTAKEKKVFKNVGISIMGIAFWEAIKDSIKKQIKKSDWICGN 60
Query: 61 VKTADDYLKTHPNSWFNSAIGVTTITAMLMNVCFADDQSKKEVAETQKEAENARDRANKS 120
VKTADDYLKTHPNSWFNSAIGVT ITAMLMNVCFADDQSKKEVA+ QKEAENARDRANKS
Sbjct: 61 VKTADDYLKTHPNSWFNSAIGVTAITAMLMNVCFADDQSKKEVAQAQKEAENARDRANKS 120
Query: 121 GIELEQEQ--------------QKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQK 166
GIELEQE+ QKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQ+
Sbjct: 121 GIELEQEEQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQE 180
Query: 167 QQKTEQEKQKTEQEKQKTEQEKQKTEQEKQ-----KTSNIETNNQIKVEQKQQKTEQEK- 220
QQKTEQEKQKT ++ + ++ QE K I+ I++E + + + K
Sbjct: 181 QQKTEQEKQKTNNTQKDLVNKAEQNCQENHNQFFIKKLGIKAGIAIEIEAECKTPKPTKT 240
Query: 221 QKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDLVKYA 280
+T + + KQ Q K + Q ++E + ++ + + + Y
Sbjct: 241 NQTPIQPKHLPNSKQPHSQRGSKAQELIAYLQKELESLPYSQKAIAKQVDFYRPSSIAYL 300
Query: 281 EQNCQENHNQFFIKKLGIKGGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPH---SQ 337
E + ++ F + K + I +A+ K ++ + L Q H SQ
Sbjct: 301 ELDPRD----FNATEEWQKENLKIRSKAQAKM----------LEMRSLKPDPQAHLSTSQ 346
Query: 338 RGSKAQEFIAYLQKELEFLPYSQKAIAK 365
Q+ A + KE++ + ++K + K
Sbjct: 347 SLLLVQKIFADVSKEIKVVANTEKKVEK 374
>ref|NP_222831.1| putative [Helicobacter pylori J99]
Length = 412
Score = 395 bits (1014), Expect = e-111
Identities = 249/464 (53%), Positives = 295/464 (62%), Gaps = 69/464 (14%)
Query: 15 MKLVKTAKEKKVFKNVGMSIMGIAFWEAIKDSIKKQ---IKKSNWICGNV-----KTADD 66
M+ VKT K KV KN A EA K++ KQ I + G + K +
Sbjct: 1 MESVKTVKTNKVGKNTET-----ANTEASKETHFKQASAITNTLRSIGGIFTKIAKKVRE 55
Query: 67 YLKTHPNSWFNSAIGVTTITAMLMNVCFADDQSKKEVAETQKEAENARDRANKSGIELEQ 126
+K HP S++ + +T + D ++ ++ Q E EN + SG+ +
Sbjct: 56 LVKKHPKK---SSVALVVLTHIACKRAKELDDKVQDKSK-QAEKENQINWWKYSGLTIAA 111
Query: 127 EQQ----KTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQ 182
T ++ E E++K E K + IK+EQ++QKTEQE+QKT + +
Sbjct: 112 SLLLAACSTGDIDKQIELEQEKKEANK---------SGIKLEQERQKTEQERQKTNKSEI 162
Query: 183 KTEQEKQKTEQEKQKTSNIE-TNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEK 241
+ EQE+QKT + S IE N+QIK EQ++QKTEQEKQK + + + EQ+KQKT
Sbjct: 163 ELEQERQKTNK-----SGIELANSQIKAEQERQKTEQEKQKANKSEIELEQQKQKT---- 213
Query: 242 QKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDLVKYAEQNCQENHNQFFIK----KLG 297
I T + E QKD +K EQNCQE H Q FIK K G
Sbjct: 214 -----INTQRDLIKE----------------QKDFIKETEQNCQEKHGQLFIKKARIKTG 252
Query: 298 IKGGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPHSQRGSKAQEFIAYLQKELEFLP 357
I GIAIE+EAECKTPKPAKTNQTPIQPKHLPNSKQP SQRGSKAQE IAYLQKELE LP
Sbjct: 253 ITTGIAIEIEAECKTPKPAKTNQTPIQPKHLPNSKQPRSQRGSKAQELIAYLQKELESLP 312
Query: 358 YSQKAIAKQVNFYKPSSIAYLELDPRDFKVTEEWQKENLKIRSKAQAKMLEMRDLKPDPQ 417
YSQKAIAKQV+FYKPSSIAYLELDPRDFKVTEEWQKENLKIRSKAQAKMLEMR +PQ
Sbjct: 313 YSQKAIAKQVDFYKPSSIAYLELDPRDFKVTEEWQKENLKIRSKAQAKMLEMR----NPQ 368
Query: 418 AHLPTSQSLLFVQKIFADVNKEIEAVANTEKKAEKAGYGYSKRM 461
AHLPTSQSLLFVQKIFAD+NKEIEAVANTEKK EKAGYGYSKRM
Sbjct: 369 AHLPTSQSLLFVQKIFADINKEIEAVANTEKKTEKAGYGYSKRM 412
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 75.9 bits (185), Expect = 2e-15
Identities = 66/286 (23%), Positives = 129/286 (45%), Gaps = 32/286 (11%)
Query: 97 DQSKKEVAETQKEAENARDRANKSGIELEQEQQ-----KTEQEKQKTEQEKQKTEQEKQK 151
++ K+EVAE ++ E +D + +E ++++ +T++E + ++E Q+ E K++
Sbjct: 195 EKQKQEVAENPQDEEKPKDDETQGSVEPPKDEEVSKELETQEELETPKEETQEQEPIKEE 254
Query: 152 TSNIETNNQIKVEQKQQKTEQEKQK---TEQEKQKTEQEKQKTEQEKQKTSNIETNNQIK 208
T I+ Q K + E E + E ++ +QE +K QE Q+ N ET I+
Sbjct: 255 TQEIKEEKQEKTQDSPSAQELEAMQELVKEIQENSNDQENKKETQETQE--NTETPQDIE 312
Query: 209 VEQ----KQQKTEQEKQKTE------QEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQE 258
++ K+++T++ +KT+ +E +T QEK+ E + + +E ++ E E
Sbjct: 313 TQELEIPKEEETQEVAEKTQVQGLEKEEIAETPQEKEIQETQDETPQELEAQDEKLQENE 372
Query: 259 QQKTEQEKQKTNNTQKDLVKYAEQNCQENHNQ--------FFIKKLGIKGGIAIEVEAEC 310
K E ++ N Q + ++ QE+H + K +G + + EA
Sbjct: 373 TPKDESMQESAQNLQDK--ETPQEETQEDHYESIEDIPEPVMAKAMGEE--LPFLNEAVA 428
Query: 311 KTPKPAKTNQTPIQPKHLPNSKQPHSQRGSKAQEFIAYLQKELEFL 356
K P +TP + ++ S + S E LQ L+ L
Sbjct: 429 KIPNNENDTETPKESDIKAPQEKEESDKTSSPLELRLNLQDLLKSL 474
Score = 71.2 bits (173), Expect = 5e-14
Identities = 65/323 (20%), Positives = 139/323 (42%), Gaps = 37/323 (11%)
Query: 96 DDQSKKEVAETQKEAENARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNI 155
++ K+EV E Q+E + + + E + ++EK K ++ + E K + +
Sbjct: 179 EEVKKEEVKEMQEEVKEKQKQ--------EVAENPQDEEKPKDDETQGSVEPPKDEEVSK 230
Query: 156 ETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQK 215
E Q ++E +++T QE++ ++E Q+ ++EKQ+ Q+ +E ++ E ++
Sbjct: 231 ELETQEELETPKEET-QEQEPIKEETQEIKEEKQEKTQDSPSAQELEAMQELVKEIQENS 289
Query: 216 TEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKD 275
+QE +K QE Q+ + Q E ++ + E ++ + + Q E+E+ +K+
Sbjct: 290 NDQENKKETQETQENTETPQDIETQELEIPKEEETQEVAEKTQVQGLEKEEIAETPQEKE 349
Query: 276 LVKYAEQNCQENHNQFFIKKLGIKGGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPH 335
+ + ++ QE Q E E +TPK ++ ++L + + P
Sbjct: 350 IQETQDETPQELEAQ-------------DEKLQENETPKDESMQES---AQNLQDKETPQ 393
Query: 336 SQRGSKAQEFIAYLQKEL------EFLPYSQKAIAKQVNFYKPSSIAYLELDPRDFKVTE 389
+ E I + + + E LP+ +A+AK N + P++ +
Sbjct: 394 EETQEDHYESIEDIPEPVMAKAMGEELPFLNEAVAKIPNNENDTE------TPKESDIKA 447
Query: 390 EWQKENLKIRSKAQAKMLEMRDL 412
+KE S L ++DL
Sbjct: 448 PQEKEESDKTSSPLELRLNLQDL 470
Score = 67.4 bits (163), Expect = 7e-13
Identities = 61/232 (26%), Positives = 112/232 (47%), Gaps = 20/232 (8%)
Query: 101 KEVAETQ-KEAENARDRANKSGIELEQEQQKTEQ-EKQKTEQEKQKTEQEKQKTSNIETN 158
+E+ ET E EN D + E E+Q +Q+ E K++ ++E +K E
Sbjct: 131 QEILETNWDELENLGDLEALAKEEPNNEEQLLPTLNEQEGETPKEEAQEEVKKEEVKEMQ 190
Query: 159 NQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKT-E 217
++K +QKQ+ E + ++EK K ++ + E K + + E Q ++E +++T E
Sbjct: 191 EEVKEKQKQEVAENPQ---DEEKPKDDETQGSVEPPKDEEVSKELETQEELETPKEETQE 247
Query: 218 QEKQKTE-QEKQKTEQEK-------QKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKT 269
QE K E QE ++ +QEK Q+ E ++ I+ N+ +QE +K QE Q+
Sbjct: 248 QEPIKEETQEIKEEKQEKTQDSPSAQELEAMQELVKEIQENSN---DQENKKETQETQEN 304
Query: 270 NNTQKDLVKYAEQNCQENHNQFFIKKLGIKGGIAIEVEAECKTPKPAKTNQT 321
T +D+ + +E Q +K ++G +E E +TP+ + +T
Sbjct: 305 TETPQDIETQELEIPKEEETQEVAEKTQVQG---LEKEEIAETPQEKEIQET 353
Score = 57.4 bits (137), Expect = 8e-10
Identities = 55/258 (21%), Positives = 115/258 (44%), Gaps = 30/258 (11%)
Query: 107 QKEAENARDRANKSGIELEQEQQKTEQEK-------QKTEQEKQKTEQEKQKTSNIETNN 159
+K NA + ++ QE +T ++ + +E+ E++ T N +
Sbjct: 112 KKLGSNASELEPSQNLDPTQEILETNWDELENLGDLEALAKEEPNNEEQLLPTLNEQEGE 171
Query: 160 QIKVE-QKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQ 218
K E Q++ K E+ K+ E+ K+K +QE + Q+++K + ET Q VE + +
Sbjct: 172 TPKEEAQEEVKKEEVKEMQEEVKEKQKQEVAENPQDEEKPKDDET--QGSVEPPKDEEVS 229
Query: 219 EKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQ--KDL 276
++ +T++E + ++E Q+ E K++T I+ +E+Q+ Q+ + ++L
Sbjct: 230 KELETQEELETPKEETQEQEPIKEETQEIK--------EEKQEKTQDSPSAQELEAMQEL 281
Query: 277 VKYAEQNCQENHNQFFIKKLGIKGGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPHS 336
VK ++N + N+ + E + +TP+ +T + I + +
Sbjct: 282 VKEIQENSNDQENKKETQ----------ETQENTETPQDIETQELEIPKEEETQEVAEKT 331
Query: 337 QRGSKAQEFIAYLQKELE 354
Q +E IA +E E
Sbjct: 332 QVQGLEKEEIAETPQEKE 349
Score = 39.3 bits (90), Expect = 2e-04
Identities = 36/171 (21%), Positives = 71/171 (41%), Gaps = 12/171 (7%)
Query: 95 ADDQSKKEVAETQKEAENARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSN 154
A+ +KE+ ETQ E + ++ E E + ++ QE + Q+K+ T QE+ + +
Sbjct: 342 AETPQEKEIQETQDETPQELEAQDEKLQENETPKDESMQESAQNLQDKE-TPQEETQEDH 400
Query: 155 IETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQ 214
E+ I + +E + K + TE K+ ++ Q+
Sbjct: 401 YESIEDIPEPVMAKAMGEELPFLNEAVAKIPNNENDTETPKES----------DIKAPQE 450
Query: 215 KTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNN-QIKVEQEQQKTEQ 264
K E +K + E + Q+ K+ ++ S +E IK+ E +K +
Sbjct: 451 KEESDKTSSPLELRLNLQDLLKSLNQESLKSLLENKTLSIKITLEDKKPNE 501
>ref|NP_222772.1| putative [Helicobacter pylori J99]
Length = 220
Score = 58.9 bits (141), Expect = 3e-10
Identities = 55/213 (25%), Positives = 92/213 (42%), Gaps = 28/213 (13%)
Query: 98 QSKKEVAETQKEA---ENARDRANK--SGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKT 152
+S + E K+A N ++ K EL +E + EK++ E+E + +K+
Sbjct: 4 KSSNDTQENPKDALKSTNFHEKHTKPTETTELVEENKALTTEKERLERENKNLTADKENL 63
Query: 153 SNIETNNQIKV-EQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQ 211
+ +T Q +V E K K E +K + ++K K + K+KT E N
Sbjct: 64 TKEKTELQKQVNELKNSKQVLENEKADWLREKENLTKDRENLTKEKTELTEKN------- 116
Query: 212 KQQKTEQEKQKTEQE---KQKTEQEKQKTE-------QEKQKTSNIETNNQIKVE----- 256
K TE+E+ TE+E K+KTE +KQ E E +K N ++K +
Sbjct: 117 KVLTTEKERLATEKENLTKEKTESQKQVNELKNSKQVLENEKADLTNENTKLKTDKTDLT 176
Query: 257 QEQQKTEQEKQKTNNTQKDLVKYAEQNCQENHN 289
++ Q+ EK + NN L E+ + N
Sbjct: 177 EKNQRLTTEKTELNNKITGLATEKERLAADKEN 209
Score = 57.4 bits (137), Expect = 8e-10
Identities = 45/182 (24%), Positives = 86/182 (46%), Gaps = 17/182 (9%)
Query: 100 KKEVAETQKEAENARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIETNN 159
K+ + K ++ K EL+++ + + KQ E EK +EK+ N+ +
Sbjct: 46 KERLERENKNLTADKENLTKEKTELQKQVNELKNSKQVLENEKADWLREKE---NLTKDR 102
Query: 160 QIKVEQKQQKTEQEK-QKTEQEKQKTEQE---KQKTEQEKQKTSNIETNNQIKVEQKQQK 215
+ ++K + TE+ K TE+E+ TE+E K+KTE +KQ N++K ++ +
Sbjct: 103 ENLTKEKTELTEKNKVLTTEKERLATEKENLTKEKTESQKQV-------NELKNSKQVLE 155
Query: 216 TEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQI---KVEQEQQKTEQEKQKTNNT 272
E+ E K KT++ + ++ T E NN+I E+E+ ++E +
Sbjct: 156 NEKADLTNENTKLKTDKTDLTEKNQRLTTEKTELNNKITGLATEKERLAADKENLTKESR 215
Query: 273 QK 274
Q+
Sbjct: 216 QR 217
Score = 51.6 bits (122), Expect = 4e-08
Identities = 49/203 (24%), Positives = 94/203 (46%), Gaps = 18/203 (8%)
Query: 111 ENARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKT 170
EN +D + E+ + TE + E + TE+E+ + N K ++KT
Sbjct: 11 ENPKDALKSTNFH-EKHTKPTETTELVEENKALTTEKERLERENKNLTAD-KENLTKEKT 68
Query: 171 EQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKT 230
E +KQ E + K E +K + ++K N+ + + ++K + TE+ K T T
Sbjct: 69 ELQKQVNELKNSKQVLENEKADWLREK-ENLTKDRENLTKEKTELTEKNKVLT------T 121
Query: 231 EQEKQKTEQE---KQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDLVKYAEQNCQEN 287
E+E+ TE+E K+KT + + N++K ++ + E+ NT+ +K + + E
Sbjct: 122 EKERLATEKENLTKEKTESQKQVNELKNSKQVLENEKADLTNENTK---LKTDKTDLTEK 178
Query: 288 HNQFFIKKLGIKG---GIAIEVE 307
+ + +K + G+A E E
Sbjct: 179 NQRLTTEKTELNNKITGLATEKE 201
Score = 37.7 bits (86), Expect = 6e-04
Identities = 41/200 (20%), Positives = 75/200 (37%), Gaps = 21/200 (10%)
Query: 16 KLVKTAKEKKVFKNVGMSIMGIAFWEAIKDSIKKQIKKSNWICGNVKTADDYLKTHPNSW 75
K + T KE+ +N ++ A K+++ K+ + +K + L+ W
Sbjct: 40 KALTTEKERLERENKNLT--------ADKENLTKEKTELQKQVNELKNSKQVLENEKADW 91
Query: 76 FNSAIGVTTITAMLMNVCFADDQSKKEVAETQKEAENARDRANKSGIELEQEQQKTEQEK 135
+T L + K E+ E K ++R L +E KTE +K
Sbjct: 92 LREKENLTKDRENLT-------KEKTELTEKNKVLTTEKERLATEKENLTKE--KTESQK 142
Query: 136 QKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEK 195
Q E + K E +K N ++K + KT+ ++ +KTE + T
Sbjct: 143 QVNELKNSKQVLENEKADLTNENTKLKTD----KTDLTEKNQRLTTEKTELNNKITGLAT 198
Query: 196 QKTSNIETNNQIKVEQKQQK 215
+K + E +Q+K
Sbjct: 199 EKERLAADKENLTKESRQRK 218
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 58.5 bits (140), Expect = 3e-10
Identities = 59/276 (21%), Positives = 114/276 (40%), Gaps = 42/276 (15%)
Query: 102 EVAETQKEAENARDRANKSGIELEQEQQKTEQ--------------EKQKTEQEKQKTEQ 147
E+ +TQKE +N ++A G+EL+ + T + E+ + Q + +Q
Sbjct: 13 ELGKTQKELKNVIEQAKDIGLELKTNFKMTPEQAGKLYKYIVDGIKEQIQANQPTKNPKQ 72
Query: 148 EKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQI 207
+ + N + ++ + ++E+ K + + +KT+++K++ K IE N
Sbjct: 73 DNKDDLNTAATPKPLAKKASKTPKKEETKAQPKPKKTKEKKKEAPAPIIKKKEIEIVNTF 132
Query: 208 -----------------KVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETN 250
++E+ +QK QE QK+ + K Q T SN+ +
Sbjct: 133 ENQTPLVENTPKAVSHSQIEKAKQKL-QEIQKSREALNKLTQSNTNTTNNANSASNV--S 189
Query: 251 NQIKVEQEQQKTEQEKQKTNNTQK----DLVKYAEQNCQENHNQFFIKKLGIKGGIA--- 303
N K E +K EQE ++ N ++ ++K ++ E N K + A
Sbjct: 190 NAKKEISEVKKQEQEIKRHENIKRRTGFRVIKRNDETENETENSVTESKKPTQSAAAIFE 249
Query: 304 -IEVEAECKTPKPAKTNQTPIQPKHLPNSKQPHSQR 338
I+ E + K + K + P +PK P +K S +
Sbjct: 250 DIKKEWQEKDKQETKKTKKPSKPKATPTAKNNKSHK 285
Score = 48.1 bits (113), Expect = 5e-07
Identities = 51/218 (23%), Positives = 88/218 (39%), Gaps = 37/218 (16%)
Query: 100 KKEVAETQKEAENARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIETNN 159
K++ + A + A K+ ++E+ K + + +KT+++K++ K IE N
Sbjct: 71 KQDNKDDLNTAATPKPLAKKASKTPKKEETKAQPKPKKTKEKKKEAPAPIIKKKEIEIVN 130
Query: 160 QIK-----------------VEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIE 202
+ +E+ +QK QE QK+ + K Q T SN+
Sbjct: 131 TFENQTPLVENTPKAVSHSQIEKAKQKL-QEIQKSREALNKLTQSNTNTTNNANSASNV- 188
Query: 203 TNNQIKVEQKQQKTEQEKQKTEQEKQKT-------------EQEKQKTEQEKQKTSNIET 249
+N K + +K EQE ++ E K++T E E TE +K S
Sbjct: 189 -SNAKKEISEVKKQEQEIKRHENIKRRTGFRVIKRNDETENETENSVTESKKPTQSAAAI 247
Query: 250 NNQIKVEQEQQKTEQEKQKTNNTQKDLVKYAEQNCQEN 287
IK E + E++KQ+T T+K A + N
Sbjct: 248 FEDIKKEWQ----EKDKQETKKTKKPSKPKATPTAKNN 281
Score = 44.3 bits (103), Expect = 7e-06
Identities = 40/195 (20%), Positives = 84/195 (42%), Gaps = 13/195 (6%)
Query: 97 DQSKKEVAETQK--EAENARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSN 154
+++K+++ E QK EA N ++N + K++ + K K EQE ++ N
Sbjct: 152 EKAKQKLQEIQKSREALNKLTQSNTNTTNNANSASNVSNAKKEISEVK-KQEQEIKRHEN 210
Query: 155 IETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQ 214
I+ +V ++ +TE E + + E +K Q ++ +K E + K E K+
Sbjct: 211 IKRRTGFRVIKRNDETENETENSVTESKKPTQSAAAIFEDIKK----EWQEKDKQETKKT 266
Query: 215 KTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKV------EQEQQKTEQEKQK 268
K + + T K + ++ K ++I + ++ EQ+ E+E+++
Sbjct: 267 KKPSKPKATPTAKNNKSHKIDFSDVRDFKGNDIYDDETDEILLFDLHEQDNLNKEEEEKE 326
Query: 269 TNNTQKDLVKYAEQN 283
D V+ +N
Sbjct: 327 ARQNINDRVRVQRKN 341
>ref|NP_223176.1| putative [Helicobacter pylori J99]
Length = 450
Score = 58.2 bits (139), Expect = 4e-10
Identities = 33/200 (16%), Positives = 96/200 (47%), Gaps = 10/200 (5%)
Query: 98 QSKKEVAETQKEAENARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIET 157
++K+E+ + + ++ ++ LE++ + + K ++E++++ E++KT
Sbjct: 258 ENKREIKQEAIKEPKKANQGTENAPTLEEKNYQKAERKFDAKEERRRSRDERKKTK---- 313
Query: 158 NNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEK--QKTSNIETNNQIKVEQKQQK 215
++ + E+EK+ E+++++TE+ ++ E +K +K + E +I E +
Sbjct: 314 ----ATKKAMEFEEREKEHDERDEKETEERRKALEMDKGNEKVNAKENEREINQESANEP 369
Query: 216 TEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKD 275
+ + + + + ++ ++E K S+ E ++K E+++ K EQ ++ ++
Sbjct: 370 SSENNATLKDTENTSVLKESAAKKEAPKPSSKEEKRRLKEEKKKAKAEQRAREFEQRARE 429
Query: 276 LVKYAEQNCQENHNQFFIKK 295
+ E+ +E + K
Sbjct: 430 HQERDEKELEERRKALEMNK 449
Score = 54.3 bits (129), Expect = 6e-09
Identities = 48/221 (21%), Positives = 100/221 (44%), Gaps = 23/221 (10%)
Query: 82 VTTITAMLMNVCFADDQSKKEVAETQKEAENARDRANKSGIELEQEQQKTEQEKQKTEQE 141
V I A + F+ QSK A +A +++ + IE ++E+ + K++ +QE
Sbjct: 209 VEGIDAGTLGKLFSGSQSKNYFA--YYDALVKKEKRKEVRIEKKEERIDARENKREIKQE 266
Query: 142 KQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNI 201
K + K +N T N +E+K + + K ++E++++ E++KT+ K K
Sbjct: 267 AIK----EPKKANQGTENAPTLEEKNYQKAERKFDAKEERRRSRDERKKTKATK-KAMEF 321
Query: 202 ETNNQIKVEQKQQKTEQEKQKTE----QEKQKTEQEKQKTEQEKQKTSNIETNNQIK--- 254
E + E+ +++TE+ ++ E EK ++ +++ QE + E N +K
Sbjct: 322 EEREKEHDERDEKETEERRKALEMDKGNEKVNAKENEREINQESANEPSSENNATLKDTE 381
Query: 255 ---------VEQEQQKTEQEKQKTNNTQKDLVKYAEQNCQE 286
++E K +++K ++ AEQ +E
Sbjct: 382 NTSVLKESAAKKEAPKPSSKEEKRRLKEEKKKAKAEQRARE 422
Score = 47.0 bits (110), Expect = 1e-06
Identities = 27/126 (21%), Positives = 68/126 (53%), Gaps = 4/126 (3%)
Query: 96 DDQSKKEVAETQKEAENARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNI 155
D++ +KE E +K E D+ N+ E E++ ++ + E T ++ + TS +
Sbjct: 329 DERDEKETEERRKALE--MDKGNEKVNAKENEREINQESANEPSSENNATLKDTENTSVL 386
Query: 156 ETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQK 215
+ + K E + +++EK++ ++EK+K + E Q+ + +Q+ + ++ ++E++++
Sbjct: 387 K-ESAAKKEAPKPSSKEEKRRLKEEKKKAKAE-QRAREFEQRAREHQERDEKELEERRKA 444
Query: 216 TEQEKQ 221
E K+
Sbjct: 445 LEMNKK 450
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 55.5 bits (132), Expect = 3e-09
Identities = 59/226 (26%), Positives = 108/226 (47%), Gaps = 21/226 (9%)
Query: 95 ADDQSKKEVAETQKEAENARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSN 154
+++QS+ + E E RA EQ++ +++ EQ+ Q E KQ ++
Sbjct: 30 SENQSRFLAQQKAFEKEVNEKRAQYQSYFKNLEQKEEALKERAKEQQAQFDEAVKQASAL 89
Query: 155 IETNNQIKVEQKQQKT---EQEK-----QKTEQEKQKTEQE--KQKTEQEKQKTSNIETN 204
+ + K+ ++ +K EQ+K QK EK K QE +++ E E+ K N E
Sbjct: 90 ALQDERAKIIEEARKNAFLEQQKGLELLQKELDEKSKQVQELHQKEAEIERLKRENNEAE 149
Query: 205 NQIKVEQKQ---QKTEQEKQKTEQE-KQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQ 260
+++K E ++ +K E E++K E+ +K E + ++ E++ + N N Q K E Q
Sbjct: 150 SRLKAENEKKLNEKLELEREKIEKALHEKNELKFKQQEEQLEMLRNELKNAQRKAELSSQ 209
Query: 261 KTEQEKQKTNNTQKDLVKYAEQNCQENHNQFFIKKLGIKGGIAIEV 306
+ + E Q+ + K+ + +E IKK G +GG I+V
Sbjct: 210 QFQGEVQELAIEEFLRQKFPLDSVEE------IKK-GQRGGDCIQV 248
Score = 48.5 bits (114), Expect = 4e-07
Identities = 47/172 (27%), Positives = 83/172 (47%), Gaps = 18/172 (10%)
Query: 123 ELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQ 182
++E E Q +QK EK+ E+ Q S + Q + K++ EQ+ Q E KQ
Sbjct: 27 QIESENQSRFLAQQKAF-EKEVNEKRAQYQSYFKNLEQKEEALKERAKEQQAQFDEAVKQ 85
Query: 183 KT----EQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTE 238
+ + E+ K +E +K + +E +++ QK+ EK K QE Q+ + E
Sbjct: 86 ASALALQDERAKIIEEARKNAFLEQQKGLELLQKEL---DEKSKQVQE---LHQK--EAE 137
Query: 239 QEKQKTSNIETNNQIKVEQEQ---QKTEQEKQKTNNT--QKDLVKYAEQNCQ 285
E+ K N E +++K E E+ +K E E++K +K+ +K+ +Q Q
Sbjct: 138 IERLKRENNEAESRLKAENEKKLNEKLELEREKIEKALHEKNELKFKQQEEQ 189
Score = 35.8 bits (81), Expect = 0.002
Identities = 35/157 (22%), Positives = 72/157 (45%), Gaps = 6/157 (3%)
Query: 166 KQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQ 225
K K ++ +E ++ E E Q +QK E N + Q K ++K++ +
Sbjct: 10 KCPKCQEPINVSEALYKQIESENQSRFLAQQKAFEKEVNEKRAQYQSYFKNLEQKEEALK 69
Query: 226 EKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTE--QEKQKTNNTQKDLVKYAEQN 283
E+ K EQ+ Q E KQ ++ + + K+ +E +K ++++ QK+L + ++Q
Sbjct: 70 ERAK-EQQAQFDEAVKQASALALQDERAKIIEEARKNAFLEQQKGLELLQKELDEKSKQV 128
Query: 284 CQENHNQFFIKKLGIKGGIAIEVEAECKTPKPAKTNQ 320
+ + + I++L + E E+ K K N+
Sbjct: 129 QELHQKEAEIERLKRENN---EAESRLKAENEKKLNE 162
>ref|NP_223706.1| histidine kinase [Helicobacter pylori J99]
Length = 815
Score = 50.4 bits (119), Expect = 9e-08
Identities = 32/157 (20%), Positives = 72/157 (45%), Gaps = 1/157 (0%)
Query: 100 KKEVAETQKEAENARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIETNN 159
KK A T + E A++ + E+E +K +EK K E + KT + TS+ +
Sbjct: 124 KKLQAITSQNLEGAKETSGTKEAP-EKEVKKENKEKAKEEVKANKTPTTENLTSDNPLAD 182
Query: 160 QIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQE 219
+ ++ E+ + + E+ K ++ ++ +K++ + ++ ++ KTE
Sbjct: 183 EPDLDYANMSAEEVEAEIERLLNKRQEADKERRAQKKQEDQAKPKQEVAPAKETPKTETP 242
Query: 220 KQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVE 256
K +T + + + K K + E+ K +I ++V+
Sbjct: 243 KTETRKVPKAETKAKAKADTEENKAPSIGVEQTVRVD 279
Score = 42.7 bits (99), Expect = 2e-05
Identities = 31/169 (18%), Positives = 75/169 (44%), Gaps = 5/169 (2%)
Query: 139 EQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKT 198
E E ++ ++ Q ++ + ++ E+E +K +EK K E + KT + T
Sbjct: 116 ENEIEEVVKKLQAITSQNLEGAKETSGTKEAPEKEVKKENKEKAKEEVKANKTPTTENLT 175
Query: 199 SNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQE 258
S+ ++ ++ E+ + + E+ K ++ ++ +K++ + ++ +E
Sbjct: 176 SDNPLADEPDLDYANMSAEEVEAEIERLLNKRQEADKERRAQKKQEDQAKPKQEVAPAKE 235
Query: 259 QQKTEQEKQKTNNTQKDLVK-YAEQNCQENHNQFFIKKLGIKGGIAIEV 306
KTE K +T K K A+ + +EN +G++ + ++V
Sbjct: 236 TPKTETPKTETRKVPKAETKAKAKADTEENK----APSIGVEQTVRVDV 280
>ref|NP_223515.1| putative [Helicobacter pylori J99]
Length = 541
Score = 50.4 bits (119), Expect = 9e-08
Identities = 35/147 (23%), Positives = 77/147 (51%), Gaps = 16/147 (10%)
Query: 130 KTEQEKQKTE-----QEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKT 184
KT Q+ +K QE+ K ++ KQ +E N KV+ + E+E+ KT + +
Sbjct: 402 KTSQKGEKGNAPIYLQERHKAKENKQP---LEEN---KVKPRNSGFEEEEVKTRRPEPTK 455
Query: 185 EQ----EKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQE 240
+Q ++ +T+ + K + I N K E + +++EK++ ++EK+K + E Q+ +
Sbjct: 456 DQNNAIQQGETKNNESKNTPISKENAAKKEAPKPSSKEEKRRLKEEKKKAKAE-QRAREF 514
Query: 241 KQKTSNIETNNQIKVEQEQQKTEQEKQ 267
+Q+ + ++ ++E+ ++ E K+
Sbjct: 515 EQRAREHQERDEKELEERRKALEMNKK 541
Score = 47.0 bits (110), Expect = 1e-06
Identities = 27/128 (21%), Positives = 68/128 (53%), Gaps = 7/128 (5%)
Query: 98 QSKKEVAETQKEAENARDRANKSGIELEQEQQKTEQEKQKTEQ----EKQKTEQEKQKTS 153
Q + + E ++ E + + SG E +E+ KT + + +Q ++ +T+ + K +
Sbjct: 417 QERHKAKENKQPLEENKVKPRNSGFE--EEEVKTRRPEPTKDQNNAIQQGETKNNESKNT 474
Query: 154 NIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQ 213
I N K E + +++EK++ ++EK+K + E Q+ + +Q+ + ++ ++E+++
Sbjct: 475 PISKENAAKKEAPKPSSKEEKRRLKEEKKKAKAE-QRAREFEQRAREHQERDEKELEERR 533
Query: 214 QKTEQEKQ 221
+ E K+
Sbjct: 534 KALEMNKK 541
Score = 45.8 bits (107), Expect = 2e-06
Identities = 33/141 (23%), Positives = 72/141 (50%), Gaps = 11/141 (7%)
Query: 144 KTEQEKQK-TSNIETNNQIKVEQKQQKTEQEKQKT-----EQEKQKTEQEKQKTEQ---- 193
KT Q+ +K + I + K ++ +Q E+ K K E+E+ KT + + +Q
Sbjct: 402 KTSQKGEKGNAPIYLQERHKAKENKQPLEENKVKPRNSGFEEEEVKTRRPEPTKDQNNAI 461
Query: 194 EKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQI 253
++ +T N E+ N ++ K E K +++EK++ ++EK+K + E Q+ E +
Sbjct: 462 QQGETKNNESKNTPISKENAAKKEAPKPSSKEEKRRLKEEKKKAKAE-QRAREFEQRARE 520
Query: 254 KVEQEQQKTEQEKQKTNNTQK 274
E+++++ E+ ++ +K
Sbjct: 521 HQERDEKELEERRKALEMNKK 541
Score = 45.8 bits (107), Expect = 2e-06
Identities = 35/134 (26%), Positives = 67/134 (49%), Gaps = 25/134 (18%)
Query: 126 QEQQKTEQEKQKTEQEKQKT-----EQEKQKTSNIE-TNNQIK-VEQKQQKTEQEKQ--- 175
QE+ K ++ KQ E+ K K E+E+ KT E T +Q ++Q + K + K
Sbjct: 417 QERHKAKENKQPLEENKVKPRNSGFEEEEVKTRRPEPTKDQNNAIQQGETKNNESKNTPI 476
Query: 176 ------KTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQK 229
K E K +++EK++ ++EK+K K EQ+ ++ EQ ++ ++ +K
Sbjct: 477 SKENAAKKEAPKPSSKEEKRRLKEEKKKA---------KAEQRAREFEQRAREHQERDEK 527
Query: 230 TEQEKQKTEQEKQK 243
+E++K + +K
Sbjct: 528 ELEERRKALEMNKK 541
Score = 30.8 bits (68), Expect = 0.076
Identities = 16/87 (18%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 96 DDQSKKEVAETQKEAENARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNI 155
D + + ET+ + ++ + E + +++EK++ ++EK+K + E Q+
Sbjct: 456 DQNNAIQQGETKNNESKNTPISKENAAKKEAPKPSSKEEKRRLKEEKKKAKAE-QRAREF 514
Query: 156 ETNNQIKVEQKQQKTEQEKQKTEQEKQ 182
E + E+ +++ E+ ++ E K+
Sbjct: 515 EQRAREHQERDEKELEERRKALEMNKK 541
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 50.4 bits (119), Expect = 9e-08
Identities = 55/231 (23%), Positives = 97/231 (41%), Gaps = 35/231 (15%)
Query: 93 CFADDQSKKEVAETQK----EAENARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQE 148
C + +++KE E +K EA + + KS K + E +K E EK T +
Sbjct: 1132 CVSRARNEKEKKECEKLLTPEARKLLEESKKSVKAYLDCVSKAKNEAEKKECEKLLTPEA 1191
Query: 149 KQKTSNIETNNQIKVEQK-QQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQI 207
++ E +K + + EK+K E EK T + ++ EQE +K+ +
Sbjct: 1192 RKLLE--EAKESVKAYKDCVSRARNEKEKQECEKLLTPEARKLLEQEVKKSVKAYLDCVS 1249
Query: 208 KVEQKQQKTEQEKQKT-EQEKQKTEQEKQKTEQEKQKTSNIETNN--------------- 251
+ +++K E EK T E K +Q +QK + K N + N+
Sbjct: 1250 RARNEKEKQECEKLLTPEARKFLEKQRQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEE 1309
Query: 252 QIKVEQEQQ-----------KTEQEKQKTNNTQKDLVKYAE-QNCQENHNQ 290
++K QE + +T++EK+K N DL++ + + Q NQ
Sbjct: 1310 KLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKKAQNKQNQ 1360
Score = 48.9 bits (115), Expect = 3e-07
Identities = 52/233 (22%), Positives = 101/233 (43%), Gaps = 27/233 (11%)
Query: 93 CFADDQSKKEVAETQK----EAENARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQE 148
C + +++ E E +K EA + A +S + + EK+K E EK T +
Sbjct: 879 CVSKAKNEAERKECEKLLTPEARKLLEEAKESVKAYKDCVSRARNEKEKQECEKLLTPEA 938
Query: 149 KQKTSN--IETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQE---------KQKTEQEKQK 197
K+ N ++ K E ++++ ++ K Q+K ++ K K E E+++
Sbjct: 939 KKLLENQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVRVYLDCVSKAKNEAERKE 998
Query: 198 TSNIETNNQIKVEQKQQKT-----------EQEKQKTEQEKQKTEQEKQKTEQEKQKTSN 246
+ T K+ ++ +++ EK+K E EK T + ++ EQE +K+
Sbjct: 999 CEKLLTPEARKLLEEAKESVKAYKDCVSRARNEKEKQECEKLLTPEARKLLEQEVKKSVK 1058
Query: 247 IETNNQIKVEQEQQKTEQEKQKTNNTQKDLVKYAEQNCQENHNQFFIKKLGIK 299
+ + E++K E EK T +K L++ +C +N KK +K
Sbjct: 1059 AYLDCVSRARNEKEKQECEKLLTPEARK-LLENQALDCLKNAKTEAEKKRCVK 1110
Score = 47.4 bits (111), Expect = 8e-07
Identities = 41/200 (20%), Positives = 93/200 (46%), Gaps = 23/200 (11%)
Query: 98 QSKKEVAETQKEAENARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIET 157
+++K + E ++ + +D +++ E++K E EK T + ++ EQE +K+
Sbjct: 1190 EARKLLEEAKESVKAYKDCVSRA----RNEKEKQECEKLLTPEARKLLEQEVKKSVKAYL 1245
Query: 158 NNQIKVEQKQQKTEQEK----------QKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQI 207
+ + +++K E EK +K Q+K K ++ K + + ++ + +
Sbjct: 1246 DCVSRARNEKEKQECEKLLTPEARKFLEKQRQQKDKAIKDCLKNADPNDRAAIMKCLDGL 1305
Query: 208 KVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQ 267
E+K + ++ ++K + KT +T++EK+K N+ ++ +++ Q K Q KQ
Sbjct: 1306 SDEEKLKYLQEAREKAVLDCLKT----ARTDEEKRKCQNLYSD---LIQEIQNKKAQNKQ 1358
Query: 268 KTNNTQKDLVKYAEQNCQEN 287
N K + C +N
Sbjct: 1359 --NQLSKTERLHQASECLDN 1376
Score = 45.1 bits (105), Expect = 4e-06
Identities = 37/167 (22%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 123 ELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQ 182
+ + E +K E EK T + K+ E+E +++ + + + + +K E EK T + K+
Sbjct: 584 QAKTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKK 643
Query: 183 KTEQEKQ------------KTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKT 230
K E+ K+ K E E+++ + T K+ + Q + KT++E+++
Sbjct: 644 KLEEAKKSVRAYLDCVSKAKNEAERKECEKLLTPEAKKLLENQALDCLKNAKTDEERKEC 703
Query: 231 EQEKQKTEQEK---QKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQK 274
++ K Q+K +++ + + K + E ++ E EK T +K
Sbjct: 704 LKDLPKDLQKKVLAKESVRVYLDCVSKAKNEAERKECEKLLTPEARK 750
Score = 44.3 bits (103), Expect = 7e-06
Identities = 47/204 (23%), Positives = 95/204 (46%), Gaps = 20/204 (9%)
Query: 93 CFADDQSKKEVAETQKE-AENARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEK-- 149
C + +++KE E +K A+ ++ + KTE EK++ ++ K Q+K
Sbjct: 917 CVSRARNEKEKQECEKLLTPEAKKLLENQALDC-LKNAKTEAEKKRCVKDLPKDLQKKVL 975
Query: 150 -QKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIK 208
+++ + + K + + ++ E EK T + ++ E+ K+ + K S N + K
Sbjct: 976 AKESVRVYLDCVSKAKNEAERKECEKLLTPEARKLLEEAKESVKAYKDCVSRAR-NEKEK 1034
Query: 209 VEQKQQKTEQEKQKTEQEKQKTEQ------EKQKTEQEKQKTSNIETNNQIKVEQEQ--- 259
E ++ T + ++ EQE +K+ + + + E+EKQ+ + T K+ + Q
Sbjct: 1035 QECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKLLENQALD 1094
Query: 260 ----QKTEQEKQK-TNNTQKDLVK 278
KTE EK++ + KDL K
Sbjct: 1095 CLKNAKTEAEKKRCVKDLPKDLQK 1118
Score = 41.6 bits (96), Expect = 4e-05
Identities = 43/217 (19%), Positives = 89/217 (40%), Gaps = 18/217 (8%)
Query: 105 ETQKEAENARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQI--- 161
E EA + D +S + + K +++K + Q + + ET+
Sbjct: 25 EEATEANHFEDLLKESTESSDNHLDNPTETKTHFDEDKLEETQTQMDSGGNETSESSNGS 84
Query: 162 ---KVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTS--NIETNNQIKVEQKQQKT 216
K+ +K +K +K+ Q+K E+ ++ E++ Q+ + ET + ++ +KT
Sbjct: 85 LADKLFKKARKLVDDKRPFTQQKSLDEETQKLNEEDDQENNEHQEETQTDLIDDETSEKT 144
Query: 217 EQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDL 276
+Q+ + ++ TE ++ K S ++N + E + TQ+
Sbjct: 145 QQDSPQDLSNEEATEANH---FEDLLKESTESSDNHLDNPTESSDNHLDNPTETKTQETK 201
Query: 277 VKYAEQNCQE----NHNQFFI---KKLGIKGGIAIEV 306
+ E +E +++Q I KK I GGI + V
Sbjct: 202 THFDEDKPEEITDDSNDQEIIKGSKKKYIIGGIVVAV 238
Score = 40.0 bits (92), Expect = 1e-04
Identities = 79/384 (20%), Positives = 155/384 (39%), Gaps = 75/384 (19%)
Query: 135 KQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQ-------- 186
+ + E+EKQ+ E+ + NQ K KT++E+++ + K Q
Sbjct: 515 RARNEKEKQECEKLLTPEAKKLLENQALDCLKNAKTDEERKECLKNLPKDLQSDILAKES 574
Query: 187 --------EKQKTEQEKQKTSNIETNNQIKVEQKQQK------------TEQEKQKTEQE 226
+ KTE EK++ + T K+ +++ K + E +K E E
Sbjct: 575 LKAYKDCASQAKTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECE 634
Query: 227 KQKTEQEKQKTEQEKQKT-SNIETNNQIKVEQEQQK-----TEQEKQKTNNTQKDLVKYA 280
K T + K+K E+ K+ + ++ ++ K E E+++ T + K+ N D +K A
Sbjct: 635 KLLTPEAKKKLEEAKKSVRAYLDCVSKAKNEAERKECEKLLTPEAKKLLENQALDCLKNA 694
Query: 281 E-----QNCQENHNQFFIKKLGIKGGIAIEVEAECKTPKPAKTNQ-----TPIQPKHLPN 330
+ + C ++ + KK+ K + + ++ K A+ + TP K L
Sbjct: 695 KTDEERKECLKDLPKDLQKKVLAKESVRVYLDCVSKAKNEAERKECEKLLTPEARKLLEE 754
Query: 331 SKQPHSQRGSKAQEFIAYLQKELE-----FLPYSQKAIAKQVNFYKPSSIAYLE------ 379
+K+ S + K A +KE + P ++K + + K S AYL+
Sbjct: 755 AKK--SVKAYKDCVLRARNEKEKQECEKLLTPEARKLLEES----KKSVKAYLDCVSKAK 808
Query: 380 -----------LDPRDFKVTEEWQKENLKIRSKAQAKMLEMRDLKPDPQAHLPTSQSLLF 428
L P K+ EE KE++K ++ ++ + + P ++ LL
Sbjct: 809 NEAERKECEKLLTPEARKLLEE-AKESVKAYKDCVSRARNEKEKQECEKLLTPEARKLLE 867
Query: 429 VQKIFADVNKEIEAVANTEKKAEK 452
K V ++ V+ + +AE+
Sbjct: 868 ESK--KSVKAYLDCVSKAKNEAER 889
Score = 39.7 bits (91), Expect = 2e-04
Identities = 37/182 (20%), Positives = 79/182 (43%), Gaps = 9/182 (4%)
Query: 98 QSKKEVAETQKEAENARDRANKSGIELEQEQQKTEQEKQKTEQEKQ-----KTEQEKQKT 152
+S + + +A+N +R + + ++ E+ K+ + K + E+EKQ+
Sbjct: 978 ESVRVYLDCVSKAKNEAERKECEKLLTPEARKLLEEAKESVKAYKDCVSRARNEKEKQEC 1037
Query: 153 SNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQK 212
+ T K+ +++ K + + + E+EKQ+ E+ + NQ K
Sbjct: 1038 EKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKLLENQALDCLK 1097
Query: 213 QQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNT 272
KTE EK++ ++ K Q+K ++ + + + + E++K E EK T
Sbjct: 1098 NAKTEAEKKRCVKDLPKDLQKKVLAKESVKAYLDCVS----RARNEKEKKECEKLLTPEA 1153
Query: 273 QK 274
+K
Sbjct: 1154 RK 1155
Score = 37.4 bits (85), Expect = 8e-04
Identities = 52/238 (21%), Positives = 103/238 (42%), Gaps = 25/238 (10%)
Query: 43 IKDSIKKQIKKSNWICGNVKTADDYLKTHPNSWFNSAIGVTTITAMLMNVCFADDQSKKE 102
++D +KK ++ N N KT ++ +K I + L+N Q K +
Sbjct: 349 LQDQMKKTLEAYNDCIKNAKTEEERIKCL------DLIKDENLKKSLLN------QQKVQ 396
Query: 103 VA-ETQKEAENARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQE---KQKTSNIETN 158
VA + K A+ +R K ++L + + E+ +++ E +K+ E + K + E N
Sbjct: 397 VALDCLKNAKTDEER--KECLKLINDPEIREKFRKELELQKELQEYKDCIKNAKTEAEKN 454
Query: 159 NQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQ 218
+K K+ E+ KQ+ + + ++++ E K +++ + K K
Sbjct: 455 ECLKGLSKEA-IERLKQQALDCLKNAKTDEERKECLKNIPQDLQKELLADMSVKAYKDCV 513
Query: 219 EKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDL 276
+ + E+EKQ E EK T + K+ + N + + + E+ K+ N KDL
Sbjct: 514 SRARNEKEKQ--ECEKLLTPEAKK----LLENQALDCLKNAKTDEERKECLKNLPKDL 565
Score = 36.6 bits (83), Expect = 0.001
Identities = 47/218 (21%), Positives = 95/218 (43%), Gaps = 27/218 (12%)
Query: 97 DQSKKEVA---ETQKEAENARDRANKSGIELEQEQQKTEQEKQKTEQ-----EKQKTEQE 148
DQ KK + + K A+ +R + ++ +K+ +QK + + KT++E
Sbjct: 351 DQMKKTLEAYNDCIKNAKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEE 410
Query: 149 KQKTSNI----ETNNQIKVEQKQQKTEQEKQ------KTEQEKQKTEQ--EKQKTEQEKQ 196
+++ + E + + E + QK QE + KTE EK + + K+ E+ KQ
Sbjct: 411 RKECLKLINDPEIREKFRKELELQKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQ 470
Query: 197 KTSNIETNNQIKVEQKQ--QKTEQEKQKTEQEKQKTEQEKQ-----KTEQEKQKTSNIET 249
+ + N + E+K+ + Q+ QK + K + E+EKQ+ + T
Sbjct: 471 QALDCLKNAKTDEERKECLKNIPQDLQKELLADMSVKAYKDCVSRARNEKEKQECEKLLT 530
Query: 250 NNQIKVEQEQQKTEQEKQKTNNTQKDLVKYAEQNCQEN 287
K+ + Q + KT+ +K+ +K ++ Q +
Sbjct: 531 PEAKKLLENQALDCLKNAKTDEERKECLKNLPKDLQSD 568
Score = 33.1 bits (74), Expect = 0.015
Identities = 39/158 (24%), Positives = 70/158 (43%), Gaps = 17/158 (10%)
Query: 142 KQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQK-----TEQEKQKTEQEKQKTEQEKQ 196
K K Q++ K + N+ IK KTE+E+ K ++ +K+ +QK +
Sbjct: 345 KDKKLQDQMKKTLEAYNDCIK----NAKTEEERIKCLDLIKDENLKKSLLNQQKVQVALD 400
Query: 197 KTSNIETNNQIK--VEQKQQKTEQEKQKTEQEKQKTEQE------KQKTEQEKQKTSNIE 248
N +T+ + K ++ +EK + E E QK QE KTE EK +
Sbjct: 401 CLKNAKTDEERKECLKLINDPEIREKFRKELELQKELQEYKDCIKNAKTEAEKNECLKGL 460
Query: 249 TNNQIKVEQEQQKTEQEKQKTNNTQKDLVKYAEQNCQE 286
+ I+ ++Q + KT+ +K+ +K Q+ Q+
Sbjct: 461 SKEAIERLKQQALDCLKNAKTDEERKECLKNIPQDLQK 498
Score = 28.9 bits (63), Expect = 0.29
Identities = 20/103 (19%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Query: 148 EKQKTSNIETNNQIKVEQKQQKTEQEK--QKTEQEKQKTEQEKQKTEQEKQKTSNIETNN 205
E T ET IK + + K + K + +K+K ++ +T+ E K
Sbjct: 1469 EPDITKQYETEKTIKDKSLEAKLAKALGGDKKDDDKEKGKKPTAETKAESNKIDKDVAET 1528
Query: 206 QIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIE 248
+ + K ++EK ++ + +K E+++ +TS ++
Sbjct: 1529 AKNISEIALKNKKEKSGDFVDENGNPIDDKKKEEKQDETSPVK 1571
Score = 28.5 bits (62), Expect = 0.38
Identities = 22/133 (16%), Positives = 54/133 (40%), Gaps = 10/133 (7%)
Query: 156 ETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQK 215
E N++++ +K Q+ + E+ + E E + ++++ + K + K
Sbjct: 3 EENDKLETSKKAQQDSPQDLSNEEATEANHFEDLLKESTESSDNHLDNPTETKTHFDEDK 62
Query: 216 TEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKD 275
E+ + + + +T + + +K K+ +++ Q+K TQ
Sbjct: 63 LEETQTQMDSGGNETSESSNGSLADKL------FKKARKLVDDKRPFTQQKSLDEETQ-- 114
Query: 276 LVKYAEQNCQENH 288
K E++ QEN+
Sbjct: 115 --KLNEEDDQENN 125
Score = 26.9 bits (58), Expect = 1.1
Identities = 14/101 (13%), Positives = 46/101 (44%)
Query: 102 EVAETQKEAENARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQI 161
++ + + + +D++ ++ + K + +K+K ++ +T+ E K
Sbjct: 1471 DITKQYETEKTIKDKSLEAKLAKALGGDKKDDDKEKGKKPTAETKAESNKIDKDVAETAK 1530
Query: 162 KVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIE 202
+ + K ++EK ++ + +K E+++ +TS ++
Sbjct: 1531 NISEIALKNKKEKSGDFVDENGNPIDDKKKEEKQDETSPVK 1571
>ref|NP_222774.1| putative [Helicobacter pylori J99]
Length = 327
Score = 50.4 bits (119), Expect = 9e-08
Identities = 48/190 (25%), Positives = 90/190 (47%), Gaps = 20/190 (10%)
Query: 97 DQSKKEVAETQKEAENARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQE---KQKTS 153
D+ KE T+ AEN SG+E +Q K E+ + KTE++ K+ T
Sbjct: 65 DKLTKE--NTELFAENESLSVKISGLEHSNDQLWQNNNKLTKEKAELKTEKDILAKENTR 122
Query: 154 NIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQI-KVEQK 212
+ +++ E+++ TE+E+ K E + + + E + T N + N+Q+ + +
Sbjct: 123 LLAARDRLTEEKRELTTEKERLKRENTELTHKITELTKENKALTTENDKLNHQVTALTNE 182
Query: 213 QQKTEQEKQKTEQ-----EKQKTEQEKQ------KTEQEKQKTSNIE-TNNQIK--VEQE 258
+ EQE+ + + EK+ T EK+ K +Q + ++E TNNQ++ +E
Sbjct: 183 RDSLEQERARLQDAHGFLEKRCTNLEKENQRLTDKLKQLESAQKSLENTNNQLRQALENS 242
Query: 259 QQKTEQEKQK 268
+ Q K+K
Sbjct: 243 NVQLAQAKEK 252
Score = 47.0 bits (110), Expect = 1e-06
Identities = 55/224 (24%), Positives = 103/224 (45%), Gaps = 39/224 (17%)
Query: 101 KEVAETQKEA-----ENARDRANKSGIELEQEQQKTEQEKQK---TEQEKQKTEQEKQK- 151
KE AE + E EN R A + + E+ + TE+E+ K TE + TE K+
Sbjct: 104 KEKAELKTEKDILAKENTRLLAARDRLTEEKRELTTEKERLKRENTELTHKITELTKENK 163
Query: 152 ---TSNIETNNQI--------KVEQKQQKTEQ-----EKQKTEQEKQKTEQEKQKTEQEK 195
T N + N+Q+ +EQ++ + + EK+ T EK+ + + E
Sbjct: 164 ALTTENDKLNHQVTALTNERDSLEQERARLQDAHGFLEKRCTNLEKENQRLTDKLKQLES 223
Query: 196 QKTSNIETNNQIK--VEQKQQKTEQEKQKTEQEKQKTEQE--KQKTEQEKQKTSNIETNN 251
+ S TNNQ++ +E + Q K+K EK + E+E + K+ + + S+++ +N
Sbjct: 224 AQKSLENTNNQLRQALENSNVQLAQAKEKIAIEKSELEREIARLKSLEGMEAKSDLDLHN 283
Query: 252 Q------IKVEQEQQKTEQE----KQKTNNTQKDLVKYAEQNCQ 285
+ ++++ +K E+E K++ + + L K Q Q
Sbjct: 284 RRLASANEDLKRQNRKLEEENIALKERVDGLNEQLSKLQPQKPQ 327
>ref|NP_223773.1| putative [Helicobacter pylori J99]
Length = 263
Score = 49.3 bits (116), Expect = 2e-07
Identities = 36/133 (27%), Positives = 67/133 (50%), Gaps = 5/133 (3%)
Query: 98 QSKKEVAETQKEAENARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIET 157
+++K + + K+ E A D N + E++ +K E+ +K + E+ K++
Sbjct: 33 EAEKILLDLNKKDEQAID-LNLEDLPSEKKNEKIEKVTEKQGDFLEPKEEPKEEPEESLE 91
Query: 158 NNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTE 217
+ + Q+KT++ QK EQ K EQE+Q+ +E+Q+ + N ++ ++ QQ
Sbjct: 92 DIFSSLNDFQEKTDKNAQKDEQ---KNEQEEQRRLREQQRLKQNQENQEM-LKGLQQNLN 147
Query: 218 QEKQKTEQEKQKT 230
Q QK E K KT
Sbjct: 148 QFTQKLESVKNKT 160
Score = 47.8 bits (112), Expect = 6e-07
Identities = 35/145 (24%), Positives = 66/145 (45%), Gaps = 13/145 (8%)
Query: 134 EKQKTEQEKQKTEQEKQKTSNIETN-NQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTE 192
E+ E EK + K+ I+ N + E+K +K E+ +K + E+ K++ E
Sbjct: 28 ERHNKEAEKILLDLNKKDEQAIDLNLEDLPSEKKNEKIEKVTEKQGDFLEPKEEPKEEPE 87
Query: 193 QEKQ----KTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIE 248
+ + ++ + ++ +QK EQE+Q+ +E+Q+ +Q ++ E K N+
Sbjct: 88 ESLEDIFSSLNDFQEKTDKNAQKDEQKNEQEEQRRLREQQRLKQNQENQEMLKGLQQNL- 146
Query: 249 TNNQIKVEQEQQKTEQEKQKTNNTQ 273
Q QK E K KT + Q
Sbjct: 147 -------NQFTQKLESVKNKTLDLQ 164
Score = 43.5 bits (101), Expect = 1e-05
Identities = 33/152 (21%), Positives = 69/152 (44%), Gaps = 13/152 (8%)
Query: 115 DRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEK 174
+R NK ++ + K +++ E +E++ +K + +E K++ E+ +
Sbjct: 28 ERHNKEAEKILLDLNKKDEQAIDLNLEDLPSEKKNEKIEKVTEKQGDFLEPKEEPKEEPE 87
Query: 175 QKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQE-------- 226
+ E ++KT++ QK + N Q E++++ EQ++ K QE
Sbjct: 88 ESLEDIFSSLNDFQEKTDKNAQKDE--QKNEQ---EEQRRLREQQRLKQNQENQEMLKGL 142
Query: 227 KQKTEQEKQKTEQEKQKTSNIETNNQIKVEQE 258
+Q Q QK E K KT +++ Q V+++
Sbjct: 143 QQNLNQFTQKLESVKNKTLDLQIPKQDGVDEK 174
Score = 42.7 bits (99), Expect = 2e-05
Identities = 28/117 (23%), Positives = 55/117 (46%), Gaps = 10/117 (8%)
Query: 106 TQKEAENARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQ 165
++K+ E K G LE +++ E+ ++ E ++KT ++ K EQ
Sbjct: 58 SEKKNEKIEKVTEKQGDFLEPKEEPKEEPEESLEDIFSSLNDFQEKTDKNAQKDEQKNEQ 117
Query: 166 KQQKTEQEKQKTEQEKQKTEQEK----------QKTEQEKQKTSNIETNNQIKVEQK 212
++Q+ +E+Q+ +Q ++ E K QK E K KT +++ Q V++K
Sbjct: 118 EEQRRLREQQRLKQNQENQEMLKGLQQNLNQFTQKLESVKNKTLDLQIPKQDGVDEK 174
Score = 42.0 bits (97), Expect = 3e-05
Identities = 34/134 (25%), Positives = 62/134 (45%), Gaps = 18/134 (13%)
Query: 180 EKQKTEQEKQKTEQEKQKTSNIETN-NQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTE 238
E+ E EK + K+ I+ N + E+K +K E+ +K + E+ K++ E
Sbjct: 28 ERHNKEAEKILLDLNKKDEQAIDLNLEDLPSEKKNEKIEKVTEKQGDFLEPKEEPKEEPE 87
Query: 239 QE-----------KQKTSNIETNNQIKVEQEQQK--TEQEKQKTNNTQKDLVKYAEQNCQ 285
+ ++KT ++ K EQE+Q+ EQ++ K N ++++K Q
Sbjct: 88 ESLEDIFSSLNDFQEKTDKNAQKDEQKNEQEEQRRLREQQRLKQNQENQEMLK----GLQ 143
Query: 286 ENHNQFFIKKLGIK 299
+N NQF K +K
Sbjct: 144 QNLNQFTQKLESVK 157
>ref|NP_222894.1| putative [Helicobacter pylori J99]
Length = 268
Score = 49.3 bits (116), Expect = 2e-07
Identities = 35/127 (27%), Positives = 65/127 (50%), Gaps = 5/127 (3%)
Query: 125 EQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKT 184
E E + KQ+ + +K +KQ++ N Q Q + KT +EKQ++++E +
Sbjct: 75 EFESLNMDSPKQEDKLDKVVDNIKKQESEN-SMPIQTDQAQMEMKTTEEKQESQKELKAV 133
Query: 185 EQEKQKTEQEKQKTSNIET-NNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQK 243
E T++E Q + ET + + KV K ++ ++K K ++ K ++E +K E K
Sbjct: 134 EPIPMSTQKESQAVAKKETPHKKPKVAPKDKEAHKDKAKHAAKEPKVKKEARK---EVSK 190
Query: 244 TSNIETN 250
+N +TN
Sbjct: 191 KANSKTN 197
Score = 38.9 bits (89), Expect = 3e-04
Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 8/140 (5%)
Query: 141 EKQKTEQEKQKTSNIETNN--QIKVEQKQQKTEQEKQKTEQEKQKTEQEKQ-----KTEQ 193
+K ++++K E+ N K E K K +K E E Q Q KT +
Sbjct: 62 QKIGNTKDEKKDDEFESLNMDSPKQEDKLDKVVDNIKKQESENSMPIQTDQAQMEMKTTE 121
Query: 194 EKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQI 253
EKQ+ S E + QK Q K E +K + + E K K + ++
Sbjct: 122 EKQE-SQKELKAVEPIPMSTQKESQAVAKKETPHKKPKVAPKDKEAHKDKAKHAAKEPKV 180
Query: 254 KVEQEQQKTEQEKQKTNNTQ 273
K E ++ +++ KTN T+
Sbjct: 181 KKEARKEVSKKANSKTNLTK 200
Score = 38.1 bits (87), Expect = 5e-04
Identities = 28/109 (25%), Positives = 57/109 (51%), Gaps = 7/109 (6%)
Query: 97 DQSKKEVAETQKEAENARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIE 156
D KK+ +E + D+A ++ +E+Q++++E + E T++E Q + E
Sbjct: 95 DNIKKQESENSMPIQT--DQAQME-MKTTEEKQESQKELKAVEPIPMSTQKESQAVAKKE 151
Query: 157 T-NNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETN 204
T + + KV K ++ ++K K ++ K ++E +K E K +N +TN
Sbjct: 152 TPHKKPKVAPKDKEAHKDKAKHAAKEPKVKKEARK---EVSKKANSKTN 197
Score = 37.7 bits (86), Expect = 6e-04
Identities = 42/173 (24%), Positives = 74/173 (42%), Gaps = 24/173 (13%)
Query: 165 QKQQKTEQEKQKTEQEKQKTEQEKQKTEQEK--QKTSNIETNNQIKVEQKQQKTEQEKQK 222
QK T+ EK+ E E + KQ+ + +K E+ N + ++ Q + E K
Sbjct: 62 QKIGNTKDEKKDDEFESLNMDSPKQEDKLDKVVDNIKKQESENSMPIQTDQAQMEM---K 118
Query: 223 TEQEKQKTEQEKQ---------KTEQEKQKTSNIET-NNQIKVEQEQQKTEQEKQKTNNT 272
T +EKQ E +K+ T++E Q + ET + + KV + ++ ++K K
Sbjct: 119 TTEEKQ--ESQKELKAVEPIPMSTQKESQAVAKKETPHKKPKVAPKDKEAHKDKAKHAAK 176
Query: 273 QKDLVKYAEQNCQENHNQFFIKKLGIKGGIAIEVEAECKTPKPA---KTNQTP 322
+ + K A + + N K + G ++V TP A + NQ P
Sbjct: 177 EPKVKKEARKEVSKKAN----SKTNLTKGHYLQVGVFAHTPNKAFLQEFNQFP 225
>ref|NP_223195.1| cag island protein [Helicobacter pylori J99]
Length = 522
Score = 47.8 bits (112), Expect = 6e-07
Identities = 37/146 (25%), Positives = 70/146 (47%), Gaps = 9/146 (6%)
Query: 101 KEVAETQKEAENARD----RANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIE 156
+E +T+K +A D K +E E+E ++ Q+ QK ++EK+K E+ K + +N+E
Sbjct: 123 QEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNR-ANLE 181
Query: 157 TNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTE--QEKQKTSNIETNNQIKVEQKQQ 214
N Q K +E KQ+ E E + E ++ Q+ + QI+ K+Q
Sbjct: 182 --NLTNAMSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQ 239
Query: 215 KTEQEKQKTEQEKQKTEQEKQKTEQE 240
E +Q+ + + + QK+ ++
Sbjct: 240 AEEAVRQRAKDKISIKTDKSQKSPED 265
Score = 44.3 bits (103), Expect = 7e-06
Identities = 44/213 (20%), Positives = 93/213 (43%), Gaps = 14/213 (6%)
Query: 123 ELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQ 182
ELE++++ E+EK+ EQ ++ + +++K N+ +E Q K
Sbjct: 140 ELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANLE-NLTNAMSNPQNLSNNKN 198
Query: 183 KTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQ 242
+E KQ+ E E + +E + Q + + K +E K + E+ ++ K K +
Sbjct: 199 LSELIKQQRENELDQMERLE-DMQEQAQANALKQIEELNKKQAEEAVRQRAKDKISIKTD 257
Query: 243 KTSNIETNNQIKVEQEQQKTEQEKQKTN---NTQKDLVKYAEQNCQENH--NQFFIKKLG 297
K+ +N I++ +TN T K L ++ + Q+++ + + KL
Sbjct: 258 KSQKSPEDNSIEL-----SPSDSAWRTNLVVRTNKALYQFILRIAQKDNFASAYLTVKLE 312
Query: 298 I--KGGIAIEVEAECKTPKPAKTNQTPIQPKHL 328
+ ++ +E E K + AK + I+ ++L
Sbjct: 313 YPQRHEVSSVIEEELKKREEAKRQRELIKQENL 345
Score = 42.0 bits (97), Expect = 3e-05
Identities = 40/151 (26%), Positives = 68/151 (44%), Gaps = 14/151 (9%)
Query: 126 QEQQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTE 185
QE KT++ K+ EQ+K E Q QK QK ++EK+K E+ K +
Sbjct: 123 QEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQA---QKAQKDKREKRKEERAKNRAN 179
Query: 186 QEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTS 245
E + N+ N + KQQ+ E + + E+ + QE+ + KQ
Sbjct: 180 LENLTNAMSNPQ--NLSNNKNLSELIKQQR---ENELDQMERLEDMQEQAQANALKQ--- 231
Query: 246 NIETNNQIKVEQEQQKTEQEK--QKTNNTQK 274
IE N+ + E+ ++ ++K KT+ +QK
Sbjct: 232 -IEELNKKQAEEAVRQRAKDKISIKTDKSQK 261
Score = 35.8 bits (81), Expect = 0.002
Identities = 30/169 (17%), Positives = 74/169 (43%), Gaps = 22/169 (13%)
Query: 153 SNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQK 212
S + +N I ++ K K+ +K ++ Q+ + K+ + +++ ++K
Sbjct: 87 SIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTRDYQEFLKTKKLIVDAPDPKELEEQKK 146
Query: 213 QQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTS------------NIETNNQI------- 253
+ E+E ++ Q+ QK ++EK+K E+ K + + N+ N +
Sbjct: 147 ALEKEKEAKEQAQKAQKDKREKRKEERAKNRANLENLTNAMSNPQNLSNNKNLSELIKQQ 206
Query: 254 ---KVEQEQQKTEQEKQKTNNTQKDLVKYAEQNCQENHNQFFIKKLGIK 299
+++Q ++ + ++Q N K + + ++ +E Q K+ IK
Sbjct: 207 RENELDQMERLEDMQEQAQANALKQIEELNKKQAEEAVRQRAKDKISIK 255
Score = 26.9 bits (58), Expect = 1.1
Identities = 23/102 (22%), Positives = 45/102 (43%), Gaps = 15/102 (14%)
Query: 124 LEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIETN---NQIKVEQKQQKTEQEKQKTEQE 180
+E+E +K E+ K++ E KQ+ N+ T N++ + +Q +EK + E++
Sbjct: 323 IEEELKKREEAKRQRELIKQE---------NLNTTAYINRVMMASNEQIINKEKIREEKQ 373
Query: 181 KQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQK 222
K +Q K E Q N N + + +++ K
Sbjct: 374 KIILDQAK---ALETQYVHNALKRNPVPRNYNYYQAPEKRSK 412
>ref|NP_223889.1| putative [Helicobacter pylori J99]
Length = 219
Score = 45.4 bits (106), Expect = 3e-06
Identities = 33/116 (28%), Positives = 55/116 (46%), Gaps = 7/116 (6%)
Query: 100 KKEVAETQKEAENARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIETNN 159
+K E Q + ++ AN + EQ K T +KQ+ +QE ++ E
Sbjct: 49 EKSETERQNSTFSPKEEANATTTATEQNPTKDTVPPLDTATQKQEIKQEIKQ----EIKQ 104
Query: 160 QIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKT---EQEKQKTSNIETNNQIKVEQK 212
+IK E KQ+ ++ KQ+T+QE++K + KQ + Q QKT + +E K
Sbjct: 105 EIKQEIKQEIKQEIKQETKQEQEKENKPKQNSVSPVQNDQKTPTTPLMGKKPLEYK 160
Score = 44.3 bits (103), Expect = 7e-06
Identities = 34/127 (26%), Positives = 60/127 (46%), Gaps = 17/127 (13%)
Query: 121 GIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQE 180
G ++++ +K+E E+Q + ++ +N T TEQ K
Sbjct: 34 GFYVKKDSAPMSPNVEKSETERQNSTFSPKEEANATTT----------ATEQNPTKDTVP 83
Query: 181 KQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKT--- 237
T +KQ+ +QE ++ E +IK E KQ+ ++ KQ+T+QE++K + KQ +
Sbjct: 84 PLDTATQKQEIKQEIKQ----EIKQEIKQEIKQEIKQEIKQETKQEQEKENKPKQNSVSP 139
Query: 238 EQEKQKT 244
Q QKT
Sbjct: 140 VQNDQKT 146
Score = 41.2 bits (95), Expect = 6e-05
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 5/114 (4%)
Query: 149 KQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIK 208
K+ ++ + N + ++Q T K++ TEQ K T+ +IK
Sbjct: 38 KKDSAPMSPNVEKSETERQNSTFSPKEEANATTTATEQNPTKDTVPPLDTAT--QKQEIK 95
Query: 209 VEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKT 262
E KQ+ ++ KQ+ +QE ++ +++ K EQEK+ N N + Q QKT
Sbjct: 96 QEIKQEIKQEIKQEIKQEIKQEIKQETKQEQEKE---NKPKQNSVSPVQNDQKT 146
Score = 36.6 bits (83), Expect = 0.001
Identities = 30/112 (26%), Positives = 49/112 (42%), Gaps = 8/112 (7%)
Query: 169 KTEQEKQKTEQEKQKTEQEKQ--KTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQE 226
K + EK +TE++ ++E T+ N K T +KQ+ +QE
Sbjct: 38 KKDSAPMSPNVEKSETERQNSTFSPKEEANATTTATEQNPTKDTVPPLDTATQKQEIKQE 97
Query: 227 -KQKTEQE-----KQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNT 272
KQ+ +QE KQ+ +QE ++ + E + K +Q Q QKT T
Sbjct: 98 IKQEIKQEIKQEIKQEIKQEIKQETKQEQEKENKPKQNSVSPVQNDQKTPTT 149
Score = 36.6 bits (83), Expect = 0.001
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 13/99 (13%)
Query: 182 QKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEK 241
+K+E E+Q + ++ +N T TEQ K T +KQ+ +QE
Sbjct: 49 EKSETERQNSTFSPKEEANATTT----------ATEQNPTKDTVPPLDTATQKQEIKQEI 98
Query: 242 QKTSNIETNNQIKVEQEQ---QKTEQEKQKTNNTQKDLV 277
++ E +IK E +Q Q+T+QE++K N +++ V
Sbjct: 99 KQEIKQEIKQEIKQEIKQEIKQETKQEQEKENKPKQNSV 137
Score = 29.6 bits (65), Expect = 0.17
Identities = 28/132 (21%), Positives = 52/132 (39%), Gaps = 9/132 (6%)
Query: 195 KQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIK 254
K+ ++ + N + ++Q T K++ TEQ K T+ +IK
Sbjct: 38 KKDSAPMSPNVEKSETERQNSTFSPKEEANATTTATEQNPTKDTVPPLDTAT--QKQEIK 95
Query: 255 VEQEQQKTEQEKQKTNNTQKDLVKYAEQNCQENHNQFFIKKLGIKGGIAIEVEAECKTPK 314
E +Q+ ++ KQ+ K +K + QE N+ K V+ + KTP
Sbjct: 96 QEIKQEIKQEIKQEIKQEIKQEIKQETKQEQEKENK-------PKQNSVSPVQNDQKTPT 148
Query: 315 PAKTNQTPIQPK 326
+ P++ K
Sbjct: 149 TPLMGKKPLEYK 160
>ref|NP_223189.1| cag island protein [Helicobacter pylori J99]
Length = 481
Score = 44.7 bits (104), Expect = 5e-06
Identities = 43/206 (20%), Positives = 92/206 (43%), Gaps = 30/206 (14%)
Query: 106 TQKEAENARDR------ANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIETNN 159
TQ EN++++ AN I E+E++K K E+EKQ+TE K K ++E
Sbjct: 274 TQTAPENSKEKLIEELIANSQLIANEEEREK----KLLAEKEKQETELAKYKLKDLENQK 329
Query: 160 QIKVEQKQQKTEQEKQKTEQE-----KQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQ 214
++K + + K + K+ E K E + +EK+ + + + + +++ +
Sbjct: 330 KLKALEAELKKKNTKKPRVVEVPIPPKTSDSDETMRVIKEKENYNGLLVDKETTIKRSYK 389
Query: 215 KTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNN---------QIKVEQEQQKT--- 262
T + + +K E ++ +E+ K+ +++N +K++ + K
Sbjct: 390 GT-LISENSYSKKTPINLEDLRSLEEEIKSYYVKSNGLCYANGINLYVKIKNDPYKEGML 448
Query: 263 --EQEKQKTNNTQKDLVKYAEQNCQE 286
+ QK + +D +KY +Q Q+
Sbjct: 449 CGYESVQKLLSPLRDKLKYDKQKLQK 474
Score = 33.9 bits (76), Expect = 0.009
Identities = 39/164 (23%), Positives = 66/164 (39%), Gaps = 35/164 (21%)
Query: 166 KQQKTEQEKQKTEQEKQKT-EQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTE 224
K+ E Q + Q E K+K +E S + N E+E++K
Sbjct: 259 KETNNANEAQPSPYATQTAPENSKEKLIEELIANSQLIAN------------EEEREK-- 304
Query: 225 QEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQ----------KTNNTQK 274
K E+EKQ+TE K K ++E ++K + + K + K+ KT+++ +
Sbjct: 305 --KLLAEKEKQETELAKYKLKDLENQKKLKALEAELKKKNTKKPRVVEVPIPPKTSDSDE 362
Query: 275 DLVKYAEQNCQENHNQFFIK-----KLGIKGGIAIEVEAECKTP 313
+ E +EN+N + K KG + E KTP
Sbjct: 363 TMRVIKE---KENYNGLLVDKETTIKRSYKGTLISENSYSKKTP 403
Score = 32.7 bits (73), Expect = 0.020
Identities = 31/173 (17%), Positives = 70/173 (39%), Gaps = 16/173 (9%)
Query: 137 KTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQE-- 194
K + + T N++ K+ ++ Q E+ ++K EK+K E E
Sbjct: 259 KETNNANEAQPSPYATQTAPENSKEKLIEELIANSQLIANEEEREKKLLAEKEKQETELA 318
Query: 195 KQKTSNIETNNQIKVEQKQQKTEQEKQKTEQE-----KQKTEQEKQKTEQEKQKTSNIET 249
K K ++E ++K + + K + K+ E K E + +EK+ + +
Sbjct: 319 KYKLKDLENQKKLKALEAELKKKNTKKPRVVEVPIPPKTSDSDETMRVIKEKENYNGLLV 378
Query: 250 NNQIKVEQEQQKT----EQEKQKTNNTQKDLVKYAEQNCQENHNQFFIKKLGI 298
+ + +++ + T +KT +DL ++ +E +++K G+
Sbjct: 379 DKETTIKRSYKGTLISENSYSKKTPINLEDL-----RSLEEEIKSYYVKSNGL 426
Score = 29.6 bits (65), Expect = 0.17
Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 25/119 (21%)
Query: 212 KQQKTEQEKQKTEQEKQKT-EQEKQKTEQEKQKTSNIETNNQIKVEQEQQK---TEQEKQ 267
K+ E Q + Q E K+K +E S + N E+E++K E+EKQ
Sbjct: 259 KETNNANEAQPSPYATQTAPENSKEKLIEELIANSQLIAN-----EEEREKKLLAEKEKQ 313
Query: 268 KTNNTQKDLVKYAEQNCQENHNQFFIKKLGIKGGIAIEVEAECKTPKPAKTNQTPIQPK 326
+T +L KY ++ + KKL A+E E + K K + + PI PK
Sbjct: 314 ET-----ELAKYKLKDLENQ------KKLK-----ALEAELKKKNTKKPRVVEVPIPPK 356
>ref|NP_223610.1| putative [Helicobacter pylori J99]
Length = 267
Score = 43.5 bits (101), Expect = 1e-05
Identities = 42/184 (22%), Positives = 84/184 (44%), Gaps = 25/184 (13%)
Query: 101 KEVAETQKEAENARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQ 160
+E + +A N ++ NK+ + LE+E+ + + K EQ Q +TN +
Sbjct: 26 REKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQ------------DTNAK 73
Query: 161 IKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEK 220
I QK K + K + E E++ K + + N +I+ Q + K + EK
Sbjct: 74 IASIQK---------KMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKHKSEK 124
Query: 221 QKTEQEKQKTEQEKQKTEQE---KQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDLV 277
Q+ +K+ E EK E E + + NI+ QI +++++ E+ + K + + +
Sbjct: 125 QEV-LKKEMLELEKLALELENLVENEVKNIKETQQIIFKKKEELVEKTEPKIYSFYERIR 183
Query: 278 KYAE 281
++A+
Sbjct: 184 RWAK 187
Score = 37.7 bits (86), Expect = 6e-04
Identities = 35/182 (19%), Positives = 81/182 (44%), Gaps = 35/182 (19%)
Query: 98 QSKKEVAETQKEAENARDRANKSGIELEQEQQKTEQEKQKTE-QEKQKTEQEK------- 149
+S++E+ E + A++R+N++ E+E Q + + + +K E +K+ E EK
Sbjct: 85 KSERELRSLNIEEDIAKERSNQANREIENLQNEIKHKSEKQEVLKKEMLELEKLALELEN 144
Query: 150 ---QKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTE---QEKQKTSN--I 201
+ NI+ QI ++K++ E+ + K ++ + + T +KQ I
Sbjct: 145 LVENEVKNIKETQQIIFKKKEELVEKTEPKIYSFYERIRRWAKNTSIVTIKKQACGGCFI 204
Query: 202 ETNNQIKVE-------------------QKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQ 242
N++I E + ++ + K Q K+ E+ ++++++E Q
Sbjct: 205 RLNDKIYAEVLTSGDMITCPYCGRILYAESTHESNAQPPKESQPKESQEESQEESQEESQ 264
Query: 243 KT 244
++
Sbjct: 265 ES 266
Score = 35.8 bits (81), Expect = 0.002
Identities = 32/124 (25%), Positives = 58/124 (45%), Gaps = 15/124 (12%)
Query: 178 EQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQE--KQ 235
E+EK + + K EQ Q T+ K+ Q+K + K + E E++ K+
Sbjct: 50 EEEKLALKLQVSKNEQTLQDTN-------AKIASIQKKMSEIKSERELRSLNIEEDIAKE 102
Query: 236 KTEQEKQKTSNIETNNQIKVEQEQQ----KTEQEKQKTNNTQKDLVKYAEQNCQENHNQF 291
++ Q ++ N++ N+IK + E+Q K E +K ++LV+ +N +E
Sbjct: 103 RSNQANREIENLQ--NEIKHKSEKQEVLKKEMLELEKLALELENLVENEVKNIKETQQII 160
Query: 292 FIKK 295
F KK
Sbjct: 161 FKKK 164
>ref|NP_223415.1| putative [Helicobacter pylori J99]
Length = 529
Score = 41.2 bits (95), Expect = 6e-05
Identities = 33/143 (23%), Positives = 70/143 (48%), Gaps = 17/143 (11%)
Query: 119 KSGIELEQEQQKTEQEKQKTEQEKQKTE------QEKQKTSNIETNNQIKVEQKQQKTEQ 172
KS +E E+ + K+++ K + + E + + +++ ++E ++ V +++ E+
Sbjct: 54 KSFVEAEEMRMKSQECKLQQQYENKNLQLQTHFDKKEAHLKHLEAQHKEFVRDEKRYLEK 113
Query: 173 EKQKTEQEKQKTEQEKQ---------KTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKT 223
EK++ E+E+Q EQE++ K Q K + + K E K EQ +++
Sbjct: 114 EKKELEKERQILEQERENFKKQRAICKEAQAKALDAMLNYMAYTKDEIKSMILEQLEEEL 173
Query: 224 EQEKQK--TEQEKQKTEQEKQKT 244
E +K EK+ E+ K+K+
Sbjct: 174 EAQKSALIRRYEKEAKEEGKKKS 196
Score = 39.3 bits (90), Expect = 2e-04
Identities = 31/152 (20%), Positives = 71/152 (46%), Gaps = 10/152 (6%)
Query: 144 KTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIET 203
K K K + + ++ E+ + K+ QE + +Q + K Q + ++++ ++E
Sbjct: 40 KGASAKAKLMEFQAKSFVEAEEMRMKS-QECKLQQQYENKNLQLQTHFDKKEAHLKHLEA 98
Query: 204 NNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQ---------KTEQEKQKTSNIETNNQIK 254
++ V +++ E+EK++ E+E+Q EQE++ K Q K + + K
Sbjct: 99 QHKEFVRDEKRYLEKEKKELEKERQILEQERENFKKQRAICKEAQAKALDAMLNYMAYTK 158
Query: 255 VEQEQQKTEQEKQKTNNTQKDLVKYAEQNCQE 286
E + EQ +++ + L++ E+ +E
Sbjct: 159 DEIKSMILEQLEEELEAQKSALIRRYEKEAKE 190
Score = 35.0 bits (79), Expect = 0.004
Identities = 31/148 (20%), Positives = 66/148 (43%), Gaps = 7/148 (4%)
Query: 122 IELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEK 181
+E + + +E + QE + +Q + K ++T+ K + Q K+ EK
Sbjct: 49 MEFQAKSFVEAEEMRMKSQECKLQQQYENKNLQLQTHFDKKEAHLKHLEAQHKEFVRDEK 108
Query: 182 QKTEQEKQKTEQEK----QKTSNIETNNQIKVEQKQQKTE---QEKQKTEQEKQKTEQEK 234
+ E+EK++ E+E+ Q+ N + I E + + + T+ E + E+
Sbjct: 109 RYLEKEKKELEKERQILEQERENFKKQRAICKEAQAKALDAMLNYMAYTKDEIKSMILEQ 168
Query: 235 QKTEQEKQKTSNIETNNQIKVEQEQQKT 262
+ E E QK++ I + E+ ++K+
Sbjct: 169 LEEELEAQKSALIRRYEKEAKEEGKKKS 196
Score = 33.1 bits (74), Expect = 0.015
Identities = 32/139 (23%), Positives = 64/139 (46%), Gaps = 14/139 (10%)
Query: 133 QEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTE-QEKQKTEQEKQKT 191
Q K E E+ + + ++ K N ++++ K E + E Q K+ EK+
Sbjct: 52 QAKSFVEAEEMRMKSQECKLQQQYENKNLQLQTHFDKKEAHLKHLEAQHKEFVRDEKRYL 111
Query: 192 EQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNN 251
E+EK+ ++E+++Q EQE++ ++++ +E Q + T +
Sbjct: 112 EKEKK-----------ELEKERQILEQERENFKKQRAIC-KEAQAKALDAMLNYMAYTKD 159
Query: 252 QIK-VEQEQQKTEQEKQKT 269
+IK + EQ + E E QK+
Sbjct: 160 EIKSMILEQLEEELEAQKS 178
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 40.4 bits (93), Expect = 1e-04
Identities = 78/368 (21%), Positives = 156/368 (42%), Gaps = 44/368 (11%)
Query: 101 KEVAETQKEAENARDRA---NKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIET 157
K +AE E + A + N +++E ++ ++E+ + Q K K+ N+E
Sbjct: 63 KNLAENGIEDKFANSKIAWYNNESLKIEVYNKQFKEEQLRNSQVKGIFTLGKKTNENLE- 121
Query: 158 NNQIKVEQKQQ---KTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQ 214
K+E K++ K ++K K E Q Q+K+K +EK T + N K E++ +
Sbjct: 122 ----KIESKKESINKENEKKIKNEASLQVLTQKKEK--EEKDFTDSCWKNLYKKNEEEFK 175
Query: 215 KTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIE-TNNQIKVEQEQQKTEQEKQKTNNTQ 273
+ + ++ E+ K K +E + + + + +E +I++ + +TE + + T
Sbjct: 176 EILEGFKRKEKFKGKILKEFENDKHNQSEIVGLEKLKEKIEIVFSKNQTELALLECDLTD 235
Query: 274 KDLVKYAEQNCQENHNQFFIKKLGIKGGIAIEVEAECKTPKPAKTNQTPIQPKHL--PNS 331
D + ENH+ + K +G G +AI K Q + NS
Sbjct: 236 FDSI--------ENHSIWEQKIVG-SGDVAI-----ANLIKTLSNEDWVAQGREYVKDNS 281
Query: 332 KQPHSQRGSKAQEFIAYLQKELEFLPYSQKAIAKQVNFYKPSSIAYLE-----LDPRDFK 386
P Q+ + +EF +K+LE Y + + + K Y L+ D
Sbjct: 282 ICPFCQKETITEEF----KKQLE--SYFDTSYQESTDTIKKMKEDYTNKTDEALERLDEI 335
Query: 387 VTEEWQKENLKIRSKAQAKMLE--MRDLKPDPQAHLPTSQSLLFVQKIFADVNKEIEAVA 444
+ E K+ ++ +++E +K + Q + S+ + K+ ++ N EI+A+
Sbjct: 336 IKTEQNNSQTKLDTENLKRIIETLRSKIKANQQKMIDKSKEMSRNFKLDSNKN-EIDAIK 394
Query: 445 NTEKKAEK 452
+ KKA +
Sbjct: 395 DLIKKANE 402
Score = 37.7 bits (86), Expect = 6e-04
Identities = 32/147 (21%), Positives = 68/147 (45%), Gaps = 17/147 (11%)
Query: 165 QKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTE 224
QK+ TE+ K++ E + QE T ++ ++ +T+ ++ + KTEQ +T+
Sbjct: 287 QKETITEEFKKQLESYFDTSYQESTDTIKKMKEDYTNKTDEALERLDEIIKTEQNNSQTK 346
Query: 225 QEKQ------KTEQEKQKTEQEKQKTSNIETNNQIKVEQEQ----------QKTEQEKQK 268
+ + +T + K K Q+K + E + K++ + +K ++
Sbjct: 347 LDTENLKRIIETLRSKIKANQQKMIDKSKEMSRNFKLDSNKNEIDAIKDLIKKANEQITN 406
Query: 269 TNNTQKDLVKYAEQNCQENHNQFFIKK 295
N T KD+ K +++C+E +F I +
Sbjct: 407 HNETIKDIEK-QKKSCKEQTWKFLINE 432
Score = 37.0 bits (84), Expect = 0.001
Identities = 51/220 (23%), Positives = 90/220 (40%), Gaps = 40/220 (18%)
Query: 108 KEAENARDRANKSGIE-LEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIETN-------- 158
KE EN D+ N+S I LE+ ++K E K + E E + +IE +
Sbjct: 193 KEFEN--DKHNQSEIVGLEKLKEKIEIVFSKNQTELALLECDLTDFDSIENHSIWEQKIV 250
Query: 159 --------NQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQE--KQKTSNIETNNQIK 208
N IK + Q ++ + +K+ +E KQ S +T+ Q
Sbjct: 251 GSGDVAIANLIKTLSNEDWVAQGREYVKDNSICPFCQKETITEEFKKQLESYFDTSYQES 310
Query: 209 VEQKQQKTEQEKQKTEQEKQ------KTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQK- 261
+ ++ E KT++ + KTEQ +T+ + + I + K++ QQK
Sbjct: 311 TDTIKKMKEDYTNKTDEALERLDEIIKTEQNNSQTKLDTENLKRIIETLRSKIKANQQKM 370
Query: 262 TEQEKQKTNNTQ-----------KDLVKYAEQNCQENHNQ 290
++ K+ + N + KDL+K A + NHN+
Sbjct: 371 IDKSKEMSRNFKLDSNKNEIDAIKDLIKKANEQI-TNHNE 409
Score = 34.7 bits (78), Expect = 0.005
Identities = 46/223 (20%), Positives = 90/223 (39%), Gaps = 25/223 (11%)
Query: 49 KQIKKSNWICG--NVKTADDYLKTHPNSWFNSAIGVTTITAMLMNVCFADDQSKKEVAET 106
++ K N IC +T + K S+F+++ +T T M +D + K
Sbjct: 274 REYVKDNSICPFCQKETITEEFKKQLESYFDTSYQESTDTIKKMK----EDYTNKTDEAL 329
Query: 107 QKEAENARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQK 166
++ E + N S +L+ E K E T + K K Q+K + E + K++
Sbjct: 330 ERLDEIIKTEQNNSQTKLDTENLKRIIE---TLRSKIKANQQKMIDKSKEMSRNFKLDSN 386
Query: 167 QQKTEQEKQKTEQ-EKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQ------- 218
+ + + K ++ +Q T + + EKQK S E + + + + ++
Sbjct: 387 KNEIDAIKDLIKKANEQITNHNETIKDIEKQKKSCKEQTWKFLINEFKSDIQEYNKKYCG 446
Query: 219 --------EKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQI 253
EK+ +E +++ + E + E EK S N+I
Sbjct: 447 LEKGINNLEKEISENQEKVKKLENEIKELEKNMVSIKPIVNEI 489
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 40.4 bits (93), Expect = 1e-04
Identities = 42/166 (25%), Positives = 75/166 (44%), Gaps = 15/166 (9%)
Query: 108 KEAENARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQE----KQKTSNIETNNQIKV 163
KE +A + N + +EQ K + KT + ++ K+ +S + N KV
Sbjct: 205 KEVISAFKQINGYAVVVEQAINKKNELVLKTMYKSNGDYKDNNAYKKFSSTLTLNADAKV 264
Query: 164 EQKQQK----TEQEKQK---TEQEKQKTEQEKQKTEQEKQKTSNIETNNQ---IKVEQKQ 213
TE QK ++++ K + +T + S +E N K+E +Q
Sbjct: 265 NHGLSSHSGATENLTQKPLTSQEDLLKDTENLNETTPKPTHLSPLELANAEKLAKLESEQ 324
Query: 214 QKTEQEKQKT-EQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQE 258
++EQE K EQE ++ E K+K E E+ +IE+ +I+V ++
Sbjct: 325 LQSEQEFLKAKEQELKRKEALKKKLEHERGNAGHIESQTKIEVGED 370
Score = 30.8 bits (68), Expect = 0.076
Identities = 35/172 (20%), Positives = 69/172 (39%), Gaps = 3/172 (1%)
Query: 95 ADDQSKKEVAETQKEAENARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSN 154
AD + ++ EN + S +L ++ + + K +K +
Sbjct: 260 ADAKVNHGLSSHSGATENLTQKPLTSQEDLLKDTENLNETTPKPTHLSPLELANAEKLAK 319
Query: 155 IETNNQIKVEQKQQKT-EQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQ 213
+E+ Q++ EQ+ K EQE ++ E K+K E E+ + +T IE I + +
Sbjct: 320 LESE-QLQSEQEFLKAKEQELKRKEALKKKLEHERGNAGHIESQT-KIEVGEDIPTQVQA 377
Query: 214 QKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQE 265
Q + + E+E + K + K + T + + +EQ K+ E
Sbjct: 378 QIPKSRVRLNEREIYDLDYAIVKAKDLKPSFTTGGTQKRTDMNEEQIKSIAE 429
>ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEIN [Helicobacter pylori
J99]
Length = 280
Score = 39.7 bits (91), Expect = 2e-04
Identities = 33/160 (20%), Positives = 71/160 (43%), Gaps = 24/160 (15%)
Query: 81 GVTTITAMLMNVCFADDQSKKEVAETQKEAENARDRANKSGIELEQEQQKTEQEKQKTEQ 140
G T +T L ++ + + K AE+ K E +++ K +E +K E +K+ +
Sbjct: 47 GTTKVTMSLASI--NTNSNTKTNAESAKPKEEPKEKPKK------EEPKKEEPKKETKPK 98
Query: 141 EKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSN 200
K K + + + + + K E K ++ ++E+ K E +K++ ++E ++ KQ T+
Sbjct: 99 PKPKPKPKPKPKPKPKPEPKPKPEPKVEEPKKEEPKEEPKKEEAKEEAKEKSVPKQVTTK 158
Query: 201 IETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQE 240
+ K+K +QE+ E +E +
Sbjct: 159 ----------------DIVKEKDKQEESNKTSEGATSEAQ 182
Score = 37.7 bits (86), Expect = 6e-04
Identities = 35/124 (28%), Positives = 62/124 (49%), Gaps = 18/124 (14%)
Query: 132 EQEKQKTE-QEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQE-KQKTEQEKQ 189
E K K E +EK K E+ K++ ET + K + K + + K K E + K + + E+
Sbjct: 69 ESAKPKEEPKEKPKKEEPKKEEPKKETKPKPKPKPKPKPKPKPKPKPEPKPKPEPKVEEP 128
Query: 190 KTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQE--KQKTEQEK-QKTSN 246
K E+ K+ E K+++ ++E ++ KQ T ++ K+K +QE+ KTS
Sbjct: 129 KKEEPKE-------------EPKKEEAKEEAKEKSVPKQVTTKDIVKEKDKQEESNKTSE 175
Query: 247 IETN 250
T+
Sbjct: 176 GATS 179
Score = 37.4 bits (85), Expect = 8e-04
Identities = 40/189 (21%), Positives = 78/189 (41%), Gaps = 18/189 (9%)
Query: 144 KTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIET 203
KT E K K E K+++ ++E + + K K + + + + + K
Sbjct: 65 KTNAESAKPKEEPKEKPKKEEPKKEEPKKETKPKPKPKPKPKPKPKPKPKPEPKP----- 119
Query: 204 NNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTE 263
K E K ++ ++E+ K E +K++ ++E ++ KQ T+ + K E+ + +E
Sbjct: 120 ----KPEPKVEEPKKEEPKEEPKKEEAKEEAKEKSVPKQVTTKDIVKEKDKQEESNKTSE 175
Query: 264 ---QEKQKTNN--TQKDLVKYAEQNCQENHNQFFIKKLGIKGGI----AIEVEAECKTPK 314
E Q N + + L+K +N + GI+G + I + K
Sbjct: 176 GATSEAQAYNPGVSNEFLMKIQTAISSKNRYPKMAQIRGIEGEVLVSFTINADGSVTDIK 235
Query: 315 PAKTNQTPI 323
K+N T I
Sbjct: 236 VVKSNTTDI 244
>ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99]
Length = 856
Score = 39.3 bits (90), Expect = 2e-04
Identities = 45/194 (23%), Positives = 82/194 (42%), Gaps = 28/194 (14%)
Query: 111 ENARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKT 170
+ A D ++ +L+ + + + ++ Q+ E EKQ +E N+ ++ Q+
Sbjct: 385 DKAIDLIDEGAAQLKMQMESEPAKLSSVKRSIQRLEMEKQA---LEMENKESNHKRMQEI 441
Query: 171 EQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKT 230
+E ++EK + E + E EK+ I +++K+E + K E E+ K + Q+
Sbjct: 442 LKELSDLKEEKIQLEAQ---FENEKEVFKEI---SRLKMEMEGLKKEAERFKRNGDYQQA 495
Query: 231 EQ-------EKQKTEQEKQK-----------TSNIETNNQIKVEQEQQKTEQEKQKTNNT 272
+ EK+K E+E Q N T N I E Q T QK +
Sbjct: 496 AEIEYSKIPEKEKKEKELQHKWETMQQNGALLQNALTENNI-AEIVSQWTHIPVQKMLQS 554
Query: 273 QKDLVKYAEQNCQE 286
+K+ V E Q+
Sbjct: 555 EKNRVLNIESELQK 568
Score = 33.9 bits (76), Expect = 0.009
Identities = 34/145 (23%), Positives = 66/145 (45%), Gaps = 8/145 (5%)
Query: 97 DQSKKEVAETQKEAENARDRANKSGIELEQEQQKTEQ-EKQKTEQEKQKTEQEKQKTSNI 155
+ + K + E KE + ++ + + E E++ ++ + K E E K E E+ K N
Sbjct: 432 ESNHKRMQEILKELSDLKEEKIQLEAQFENEKEVFKEISRLKMEMEGLKKEAERFKR-NG 490
Query: 156 ETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNI-ETNNQIKVEQKQQ 214
+ ++E + +++K+K Q K +T Q+ Q +NI E +Q Q+
Sbjct: 491 DYQQAAEIEYSKIPEKEKKEKELQHKWETMQQNGALLQNALTENNIAEIVSQWTHIPVQK 550
Query: 215 KTEQEKQK-----TEQEKQKTEQEK 234
+ EK + +E +K+ QEK
Sbjct: 551 MLQSEKNRVLNIESELQKRVVGQEK 575
Score = 25.4 bits (54), Expect = 3.2
Identities = 24/126 (19%), Positives = 54/126 (42%), Gaps = 7/126 (5%)
Query: 160 QIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQE-----KQKTSNIETNNQIKVEQKQQ 214
++ V+ + K + Q ++Q Q + Q E K+ S I T+ +
Sbjct: 62 KLSVQSELNKFAKVSQISKQNIQLNQALIQSLENAQGLMAKRGDSFIATDAYLLANMNLF 121
Query: 215 KTEQEKQKTEQEKQKTEQE--KQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNT 272
++ + +E QKT + K +T Q+K SN+E+ + ++ Q+ E +
Sbjct: 122 ESVLKPYLDTKELQKTLESLRKGRTIQDKNDDSNLESLEKFGIDLTQKALENKLDPVIGR 181
Query: 273 QKDLVK 278
+++++
Sbjct: 182 DEEIIR 187
>ref|NP_223770.1| putative [Helicobacter pylori J99]
Length = 331
Score = 38.9 bits (89), Expect = 3e-04
Identities = 36/185 (19%), Positives = 79/185 (42%), Gaps = 7/185 (3%)
Query: 99 SKKEVAETQKEAENARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIETN 158
+KKE+ + Q ++N + K I + E QE ++ E Q + + + +
Sbjct: 29 TKKELKQLQVNSKNFSNILTK--IHSQVEANTLSQEGLRSVYEGQANKIKDLNNAILSQE 86
Query: 159 NQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQ 218
++ + Q+ + K Q+ Q E + + +Q ++ N+ E + ++
Sbjct: 87 ESLRALKASQEVQANTLK--QQSQTLEDLRNEIHANQQAIQQLDKQNKEMSELLTKLSQD 144
Query: 219 EKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVE--QEQQKTEQEKQKTNNTQKDL 276
+ ++ +++++K E+ + ++ N +K E + Q+K QEK K KDL
Sbjct: 145 LVSQIALIQKALKEQEEKAEKPLKSSTPANKNPPLKAETPKNQEKKTQEKAKV-EFDKDL 203
Query: 277 VKYAE 281
K E
Sbjct: 204 SKQKE 208
Score = 37.4 bits (85), Expect = 8e-04
Identities = 33/146 (22%), Positives = 66/146 (44%), Gaps = 15/146 (10%)
Query: 89 LMNVCFADDQSKKEVAETQKEAENARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQE 148
L N + ++S + + +Q+ N + +++ +L E +Q Q+ +++ ++ +
Sbjct: 78 LNNAILSQEESLRALKASQEVQANTLKQQSQTLEDLRNEIHANQQAIQQLDKQNKEMSEL 137
Query: 149 KQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIK 208
K S + +QI + QK K EQE++ + K T K ET
Sbjct: 138 LTKLSQ-DLVSQIALIQKALK--------EQEEKAEKPLKSSTPANKNPPLKAET----- 183
Query: 209 VEQKQQKTEQEKQKTEQEKQKTEQEK 234
+ Q+K QEK K E +K ++Q++
Sbjct: 184 -PKNQEKKTQEKAKVEFDKDLSKQKE 208
Score = 29.6 bits (65), Expect = 0.17
Identities = 31/178 (17%), Positives = 68/178 (37%), Gaps = 11/178 (6%)
Query: 124 LEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQK 183
L E + + T++E ++ + + SNI T +VE E + E + K
Sbjct: 15 LNGEPSAFDLQSGATKKELKQLQVNSKNFSNILTKIHSQVEANTLSQEGLRSVYEGQANK 74
Query: 184 TEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQ----------EKQKTEQ-EKQKTEQ 232
+ +++ ++ + +++ +Q+++ +Q +Q +KQ E
Sbjct: 75 IKDLNNAILSQEESLRALKASQEVQANTLKQQSQTLEDLRNEIHANQQAIQQLDKQNKEM 134
Query: 233 EKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDLVKYAEQNCQENHNQ 290
+ T+ + S I + EQE++ + K T + +K QE Q
Sbjct: 135 SELLTKLSQDLVSQIALIQKALKEQEEKAEKPLKSSTPANKNPPLKAETPKNQEKKTQ 192
>ref|NP_223642.1| putative [Helicobacter pylori J99]
Length = 195
Score = 38.5 bits (88), Expect = 4e-04
Identities = 33/154 (21%), Positives = 73/154 (46%), Gaps = 13/154 (8%)
Query: 87 AMLMNVCFADDQSKKEVAETQKEAENARDRANKSGIELEQEQQKTEQEKQKT-EQEKQKT 145
A + ++ FA D+++ A+ + + + + + E +T ++ + + ++ +
Sbjct: 35 AFMKDLAFAKDKNEVIKAQDNELVKEFMQELSSLSFKEQLEFYQTNRDYDPSLDNDENSS 94
Query: 146 EQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEK--QKTSNIET 203
E TS++E +KQ+ +QK E Q E K+ +E EK +K +
Sbjct: 95 ELLDAFTSSLENL------EKQKINPIREQKRESGWQNNEDNKENSELEKAFKKDLSFSQ 148
Query: 204 NNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKT 237
+N I +++K E K++ E+E + E+E ++T
Sbjct: 149 SNPIPLDKK----ETSKEEKEEELESKEKEPKET 178
Score = 35.8 bits (81), Expect = 0.002
Identities = 25/131 (19%), Positives = 62/131 (47%), Gaps = 4/131 (3%)
Query: 149 KQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNI--ETNNQ 206
K K I+ + V++ Q+ K + E +T ++ + + +S + +
Sbjct: 44 KDKNEVIKAQDNELVKEFMQELSSLSFKEQLEFYQTNRDYDPSLDNDENSSELLDAFTSS 103
Query: 207 IKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEK--QKTSNIETNNQIKVEQEQQKTEQ 264
++ +KQ+ +QK E Q E K+ +E EK +K + +N I +++++ E+
Sbjct: 104 LENLEKQKINPIREQKRESGWQNNEDNKENSELEKAFKKDLSFSQSNPIPLDKKETSKEE 163
Query: 265 EKQKTNNTQKD 275
++++ + +K+
Sbjct: 164 KEEELESKEKE 174
>ref|NP_223574.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2399
Score = 38.5 bits (88), Expect = 4e-04
Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 17/161 (10%)
Query: 178 EQEKQKTEQEKQKTEQE---KQKTSNIETNNQIKVEQKQQKTE-QEKQKTEQEKQKTEQE 233
+Q+ Q+T QE Q K + N NN Q T ++ Q E Q+ +Q+
Sbjct: 443 QQQAQQTYQEDVANSQNALNKVASDNTIANNDTSYTQSSNPTILKDAQGLENTNQQIQQD 502
Query: 234 KQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDLVKYAEQNCQENHNQFFI 293
++ E++ + + N EQ T+ +KQ+ Q+D EQ Q + N F
Sbjct: 503 EKALEKDLAQIKQLA--NSTTGFNEQAFTQAQKQE----QQD-----EQALQNDENAFNT 551
Query: 294 KKLGIKGGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQP 334
++ G++ IA A TP P + TP KH + P
Sbjct: 552 EQEGLEQAIANAKHAN-PTPNPT-PSPTPTPIKHTAPNTPP 590
Score = 38.1 bits (87), Expect = 5e-04
Identities = 27/120 (22%), Positives = 54/120 (44%), Gaps = 1/120 (0%)
Query: 121 GIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQE 180
G +L+Q+ Q+T QE Q +N +T+ K Q + T Q+
Sbjct: 439 GDDLQQQAQQTYQEDVANSQNALNKVASDNTIANNDTSYTQSSNPTILKDAQGLENTNQQ 498
Query: 181 KQKTEQEKQKTEQEKQKTSNIETN-NQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQ 239
Q+ E+ +K + ++ +N T N+ Q Q++ +Q++Q + ++ E++ EQ
Sbjct: 499 IQQDEKALEKDLAQIKQLANSTTGFNEQAFTQAQKQEQQDEQALQNDENAFNTEQEGLEQ 558
>ref|NP_223158.1| putative [Helicobacter pylori J99]
Length = 912
Score = 38.5 bits (88), Expect = 4e-04
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 172 QEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQ---IKVEQKQQKTEQEKQKT-EQEK 227
Q+ ++++ K + +T QE + S +E N K+E + + +EQE K EQE
Sbjct: 200 QKPLTSQEDLLKNTELNNETTQEVKNLSLLEQANAEKLAKLESEAKVSEQEFLKAKEQEA 259
Query: 228 QKTEQEKQKTEQEKQKTSNIETNNQIKVEQE 258
++ K+K E E+ NIE+ +I+V ++
Sbjct: 260 KRKVALKKKLEHERGNAGNIESQTKIEVGED 290
Score = 34.7 bits (78), Expect = 0.005
Identities = 37/187 (19%), Positives = 78/187 (40%), Gaps = 16/187 (8%)
Query: 94 FADDQSKKEVAETQKEAENARDRANK----SGIELEQEQQKTEQEKQKTEQEKQKTEQEK 149
F D++ K+ + + + ++D + G Q+ ++++ K + +T QE
Sbjct: 164 FYSDRNFKDFRDARPQPSASKDNGTQPITLDGNNPTQKPLTSQEDLLKNTELNNETTQEV 223
Query: 150 QKTSNIETNNQ---IKVEQKQQKTEQEKQKTEQE--------KQKTEQEKQKTEQEKQKT 198
+ S +E N K+E + + +EQE K +++ K+K E E+ + +T
Sbjct: 224 KNLSLLEQANAEKLAKLESEAKVSEQEFLKAKEQEAKRKVALKKKLEHERGNAGNIESQT 283
Query: 199 SNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQE 258
IE I + + Q + + E+E + K + K + T + + +E
Sbjct: 284 -KIEVGEDIPTQIQAQIPKSRVRLNEREIYDLDYAIVKAKDLKPSFTTGGTQKRTDMNEE 342
Query: 259 QQKTEQE 265
Q K+ E
Sbjct: 343 QIKSIAE 349
>ref|NP_223895.1| RIBOSOME RECYCLING FACTOR (RIBOSOME RELEASING FACTOR) (RRF)
[Helicobacter pylori J99]
Length = 185
Score = 37.7 bits (86), Expect = 6e-04
Identities = 44/183 (24%), Positives = 78/183 (42%), Gaps = 22/183 (12%)
Query: 38 AFWEAIKDSIKKQIKKSNWICGNVKTAD------DYLKTH----PNSWFNSAIGVTTITA 87
A + KD ++K I+ N +++A D++K P + N V ++ A
Sbjct: 4 AIYNETKDLMQKSIQALNRDFSTLRSAKVSVNILDHIKVDYYGTPTA-LNQVGSVMSLDA 62
Query: 88 MLMNVCFADDQSKKEVAETQKEAENARDRANKSG--IELEQEQQKTEQEKQKTEQEKQKT 145
+ + + KE+ + +EA N N G I+L TEQ K + K
Sbjct: 63 TTLQISPWEKNLLKEIERSIQEA-NIGVNPNNDGETIKLFFPPMTTEQRKLIAKDAKAMG 121
Query: 146 EQEKQKTSNI--ETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIET 203
E+ K N + NN++K K E++K+ +E E +K +++ QK E K +
Sbjct: 122 EKAKVAVRNTRQDANNKVK------KLEKDKEISEDESKKAQEQIQKITDEAIKKIDESV 175
Query: 204 NNQ 206
N+
Sbjct: 176 KNK 178
Score = 32.7 bits (73), Expect = 0.020
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 12/114 (10%)
Query: 140 QEKQKTEQEKQKTSNIETNNQ-IKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKT 198
+E +++ QE N + + IK+ TEQ K + K E+ K +Q
Sbjct: 76 KEIERSIQEANIGVNPNNDGETIKLFFPPMTTEQRKLIAKDAKAMGEKAKVAVRNTRQ-- 133
Query: 199 SNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQ 252
+ NN++K K E++K+ +E E +K +++ QK E K + N+
Sbjct: 134 ---DANNKVK------KLEKDKEISEDESKKAQEQIQKITDEAIKKIDESVKNK 178
>ref|NP_223617.1| putative [Helicobacter pylori J99]
Length = 500
Score = 37.4 bits (85), Expect = 8e-04
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 123 ELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQK---QQKTEQEKQKTEQ 179
ELE E +K E+E + +E+ K ++EKQ SN V K + K+++E +K +
Sbjct: 116 ELENEHEKYEREFNRIVEEEVKKQKEKQSLSNRAKEGIRNVGNKMLGRNKSDEEIEKRAE 175
Query: 180 EKQKTEQEK------QKTEQEK-QKTSNIETNN 205
K E EK + EK +K+ ++ T N
Sbjct: 176 RIAKNELEKDTKLVSSHDQYEKIKKSGSLNTKN 208
Score = 35.4 bits (80), Expect = 0.003
Identities = 31/130 (23%), Positives = 55/130 (41%), Gaps = 14/130 (10%)
Query: 171 EQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKT 230
E E +K E+E + +E+ K ++EKQ SN V K + K+++E +K
Sbjct: 118 ENEHEKYEREFNRIVEEEVKKQKEKQSLSNRAKEGIRNVGNKM----LGRNKSDEEIEKR 173
Query: 231 EQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDLVKYAEQNCQENHNQ 290
+ K E EK K+ + E+ K+ + K+L + N + NQ
Sbjct: 174 AERIAKNELEK----------DTKLVSSHDQYEKIKKSGSLNTKNLDPRIQANSLQELNQ 223
Query: 291 FFIKKLGIKG 300
++ +G G
Sbjct: 224 KLLQFVGADG 233
Score = 30.8 bits (68), Expect = 0.076
Identities = 20/93 (21%), Positives = 46/93 (48%), Gaps = 3/93 (3%)
Query: 162 KVEQKQQKTEQEKQKTEQEKQKTEQEKQK-TEQEKQKTSNIETN--NQIKVEQKQQKTEQ 218
++E + +K E+E + +E+ K ++EKQ + + K+ N+ + K +++ +K +
Sbjct: 116 ELENEHEKYEREFNRIVEEEVKKQKEKQSLSNRAKEGIRNVGNKMLGRNKSDEEIEKRAE 175
Query: 219 EKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNN 251
K E EK ++ +K+ ++ T N
Sbjct: 176 RIAKNELEKDTKLVSSHDQYEKIKKSGSLNTKN 208
Score = 26.9 bits (58), Expect = 1.1
Identities = 30/163 (18%), Positives = 66/163 (40%), Gaps = 33/163 (20%)
Query: 208 KVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQ--E 265
++E + +K E+E + +E+ K ++EKQ ++ N + + ++ E+ E
Sbjct: 116 ELENEHEKYEREFNRIVEEEVKKQKEKQSLSNRAKEGIRNVGNKMLGRNKSDEEIEKRAE 175
Query: 266 KQKTNNTQKDLVKYAEQNCQENHNQFFIKKLGIKGGIAIEVEAECKTPKPAKTNQTPIQP 325
+ N +KD +H+Q+ K K N + P
Sbjct: 176 RIAKNELEKD------TKLVSSHDQYE------------------KIKKSGSLNTKNLDP 211
Query: 326 KHLPNSKQPHSQRGSKAQEFIAYLQKELEFLPYSQKAIAKQVN 368
+ NS Q +Q+ + ++ + +++PY+ KA+ +N
Sbjct: 212 RIQANSLQELNQK------LLQFVGADGKYMPYT-KAVRISLN 247
>ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 849
Score = 37.0 bits (84), Expect = 0.001
Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 14/128 (10%)
Query: 151 KTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVE 210
K NIE+ +E +Q E + E+E++K ++ ++ +I N + V
Sbjct: 432 KMLNIESTALKSLEDSKQSIVDEAAL-----KALEEERKKALEQAEQGCSIGENKEEAVA 486
Query: 211 QKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEK---- 266
K+ K E+ KTE K Q + KTE +++K + +E+ E +
Sbjct: 487 SKENK---EENKTEAAAPKENQTENKTEVKEEKIEVPTKTTYLLLEEAGINLETYEKILA 543
Query: 267 --QKTNNT 272
QK+NNT
Sbjct: 544 LLQKSNNT 551
Score = 31.6 bits (70), Expect = 0.044
Identities = 21/81 (25%), Positives = 40/81 (48%), Gaps = 6/81 (7%)
Query: 124 LEQEQQKTEQEK--QKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQ----KT 177
LE +Q E + E+E++K ++ ++ +I N + V K+ K E + + K
Sbjct: 444 LEDSKQSIVDEAALKALEEERKKALEQAEQGCSIGENKEEAVASKENKEENKTEAAAPKE 503
Query: 178 EQEKQKTEQEKQKTEQEKQKT 198
Q + KTE +++K E + T
Sbjct: 504 NQTENKTEVKEEKIEVPTKTT 524
Score = 31.2 bits (69), Expect = 0.058
Identities = 18/86 (20%), Positives = 39/86 (44%)
Query: 132 EQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKT 191
E K+ ++ +++ ++ +E + +EQ +Q + K E K +E+ KT
Sbjct: 437 ESTALKSLEDSKQSIVDEAALKALEEERKKALEQAEQGCSIGENKEEAVASKENKEENKT 496
Query: 192 EQEKQKTSNIETNNQIKVEQKQQKTE 217
E K + E ++K E+ + T+
Sbjct: 497 EAAAPKENQTENKTEVKEEKIEVPTK 522
Score = 27.7 bits (60), Expect = 0.64
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Query: 197 KTSNIETNNQIKVEQKQQKTEQE---KQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQI 253
K NIE+ +E +Q E K E+ K+ EQ +Q + K + +
Sbjct: 432 KMLNIESTALKSLEDSKQSIVDEAALKALEEERKKALEQAEQGCSIGENKEEAVAS---- 487
Query: 254 KVEQEQQKTEQEKQKTNNTQ 273
K +E+ KTE K N T+
Sbjct: 488 KENKEENKTEAAAPKENQTE 507
Score = 27.3 bits (59), Expect = 0.84
Identities = 12/56 (21%), Positives = 28/56 (49%)
Query: 96 DDQSKKEVAETQKEAENARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQK 151
+++ KK + + ++ ++ + +E+ KTE K Q + KTE +++K
Sbjct: 461 EEERKKALEQAEQGCSIGENKEEAVASKENKEENKTEAAAPKENQTENKTEVKEEK 516
Score = 24.6 bits (52), Expect = 5.4
Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 107 QKEAENARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQK 166
++E + A ++A + + K E K +E+ KTE K + E ++K E+
Sbjct: 461 EEERKKALEQAEQG---CSIGENKEEAVASKENKEENKTEAAAPKENQTENKTEVKEEKI 517
Query: 167 QQKTE 171
+ T+
Sbjct: 518 EVPTK 522
Score = 24.3 bits (51), Expect = 7.1
Identities = 13/56 (23%), Positives = 27/56 (48%)
Query: 97 DQSKKEVAETQKEAENARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKT 152
+Q+++ + + + E + NK + E K Q + KTE +++K E + T
Sbjct: 469 EQAEQGCSIGENKEEAVASKENKEENKTEAAAPKENQTENKTEVKEEKIEVPTKTT 524
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 37.0 bits (84), Expect = 0.001
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 21/125 (16%)
Query: 157 TNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKT 216
T+N +++ Q++T QE+ EQ Q+ ++Q T++ + Q++T
Sbjct: 351 TDNSVELNNAQEQTAQEQTTQEQTTQEQTTQEQTTQE----------------QTTQEQT 394
Query: 217 EQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQ---KTEQEKQKTNNTQ 273
QE +T QE+ E +QE T I N +I + ++ K + + K N
Sbjct: 395 TQE--QTTQEQDTQENAPTTIKQETPITPAIPLNPKIDFKPSEEVLIKGAKTRYKANIKA 452
Query: 274 KDLVK 278
+L+K
Sbjct: 453 IELLK 457
Score = 36.6 bits (83), Expect = 0.001
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 120 SGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQ 179
+ +EL Q++T QE+ EQ Q+ ++Q T T Q EQ Q+ + ++
Sbjct: 353 NSVELNNAQEQTAQEQTTQEQTTQEQTTQEQTTQEQTTQEQTTQEQTTQEQDTQENAPTT 412
Query: 180 EKQKT 184
KQ+T
Sbjct: 413 IKQET 417
Score = 34.7 bits (78), Expect = 0.005
Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 16/132 (12%)
Query: 117 ANKSGIELEQEQQKTEQE------KQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKT 170
+N G+ QE + T+ +++T QE+ EQ Q+ + E Q + Q+Q
Sbjct: 337 SNSVGLNPTQESKITDNSVELNNAQEQTAQEQTTQEQTTQEQTTQEQTTQEQTTQEQTTQ 396
Query: 171 EQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQ------KTEQEKQKTE 224
EQ T QE+ E +QE T I N +I + ++ KT +
Sbjct: 397 EQ----TTQEQDTQENAPTTIKQETPITPAIPLNPKIDFKPSEEVLIKGAKTRYKANIKA 452
Query: 225 QEKQKTEQEKQK 236
E K Q KQ+
Sbjct: 453 IELLKELQAKQE 464
Score = 33.9 bits (76), Expect = 0.009
Identities = 15/62 (24%), Positives = 35/62 (56%)
Query: 191 TEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETN 250
T++ K +++E NN + ++Q T+++ + + +++T QE+ EQ Q+ + E +
Sbjct: 345 TQESKITDNSVELNNAQEQTAQEQTTQEQTTQEQTTQEQTTQEQTTQEQTTQEQTTQEQD 404
Query: 251 NQ 252
Q
Sbjct: 405 TQ 406
Score = 32.7 bits (73), Expect = 0.020
Identities = 43/220 (19%), Positives = 84/220 (37%), Gaps = 21/220 (9%)
Query: 16 KLVKTAKEKKVFKNVGMSIMGIAFWEAIKDSIKKQIKKSNWICGNVKTADDYLKTHPNSW 75
+L+K K + + I E +++ +KK I+ +N D
Sbjct: 278 QLLKDPTTKIFYDKFQLKISPKKVLEILENRLKKSIETTNETLNAFNVLD---------- 327
Query: 76 FNSAIGVTTITAMLMNVCFADDQSKKEVAETQKEAENARDRANKSGIELEQEQQKTEQEK 135
+ AI + I+ N + + ++ + E NA+++ + + Q++T QE+
Sbjct: 328 -SQAIDLNAIS----NSVGLNPTQESKITDNSVELNNAQEQTAQE----QTTQEQTTQEQ 378
Query: 136 QKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEK 195
EQ Q+ ++Q T T Q E +QE T + + + +E+
Sbjct: 379 TTQEQTTQEQTTQEQTTQEQTTQEQDTQENAPTTIKQETPITPAIPLNPKIDFKPSEEVL 438
Query: 196 QKTSNIETNNQIKVEQ--KQQKTEQEKQKTEQEKQKTEQE 233
K + IK + K+ + +QE K + EQE
Sbjct: 439 IKGAKTRYKANIKAIELLKELQAKQEILKGDYYATLKEQE 478
Score = 32.3 bits (72), Expect = 0.026
Identities = 49/244 (20%), Positives = 94/244 (38%), Gaps = 33/244 (13%)
Query: 97 DQSKKEVAETQKEAENARDRANKSGI-ELEQ---EQQKTEQEKQKTEQEKQKTEQEKQKT 152
D ++ ET+ + A+K G+ ELE + K + E+ K +
Sbjct: 1979 DSRMWQIIETKSKGIEQFRNAHKLGLNELEDFNMGSSNASEMKAEATGNPLIIEEVKLRA 2038
Query: 153 SNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQK 212
++ K K+ +E K K +++ K + Q++ I T+ +IK+
Sbjct: 2039 EIKSEESKYKAFNKEHYFNEESLKNNASKLDYLKQELKDLETLQRSVIIPTHTEIKL--Y 2096
Query: 213 QQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNT 272
K E+ K + ++ E K+ ++ T+ ++K EQ +Q EQ K+K +
Sbjct: 2097 DLKNEESKDYELIKVKEVEPLKENASMSEEL-----THKKLK-EQNKQIAEQNKEKLDAI 2150
Query: 273 QKDLVKYAEQNCQENHNQFFI------KKLGIKGGIAIEVEAECKTPKPAKTNQTPIQPK 326
+K N N F+ K L KG + + + + + + PK
Sbjct: 2151 KKQFA--------SNLNTLFVNEEEDYKLLEYKGFVVNAYKTKYQV-------EFSLSPK 2195
Query: 327 HLPN 330
+PN
Sbjct: 2196 DIPN 2199
Score = 27.3 bits (59), Expect = 0.84
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 225 QEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQ--EQQKTEQEKQKTNNTQKDLVKYAEQ 282
QE + T+ + ++Q T Q EQ ++Q T+++ + TQ+ + EQ
Sbjct: 346 QESKITDNSVELNNAQEQTAQEQTTQEQTTQEQTTQEQTTQEQTTQEQTTQEQTTQ--EQ 403
Query: 283 NCQEN 287
+ QEN
Sbjct: 404 DTQEN 408
>ref|NP_223625.1| putative [Helicobacter pylori J99]
Length = 362
Score = 36.6 bits (83), Expect = 0.001
Identities = 64/280 (22%), Positives = 109/280 (38%), Gaps = 30/280 (10%)
Query: 21 AKEKKVFK---------NVGMSIMGIAFWEAIKDSIKKQIKKSNWICGNVKT-ADDYLKT 70
AK+K+V K N+G + GIA+ E+ + K I S+ G LK+
Sbjct: 70 AKQKEVLKAAYQFGSKENLGYEMAGIAWKESCAGTYK--INFSDPSAGIYHAYIPSVLKS 127
Query: 71 --HPNSWFNSAIGVTTITAMLMNVCFADDQSKKEVAETQKEAENARDRANKSGIELEQEQ 128
H NS F + ++ + DD EVA + R N + +
Sbjct: 128 YGHNNSPF--------LRNVMGELLIKDDAFASEVALKELLYWKTRYHDNLKDMIKSYNK 179
Query: 129 QKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTE--- 185
++ +K + +K +E Q I + K+ Q +QE QK+ +
Sbjct: 180 GSRWEKNEKANADAEKYYEEIQ--DRIRRLKESKIFDSQSSNDQELQKSANSNLDLDPIG 237
Query: 186 -QEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQE-KQKTEQEKQKTEQEKQK 243
Q Q + + S IE +QI+ Q Q+ E ++ +EQ K+ E+EK K Q
Sbjct: 238 NAMPQTLAQTETQKSQIE-KSQIEEAQTQKSQEMKEAASEQAIKKPLEKEKDKPMYLAQI 296
Query: 244 TSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDLVKYAEQN 283
S + ++ + + + K N + K K A +N
Sbjct: 297 NSADFAPAKKSPKKPAKASPKRSSKNNISVKSNTKTASKN 336
>ref|NP_222840.1| putative [Helicobacter pylori J99]
Length = 285
Score = 35.4 bits (80), Expect = 0.003
Identities = 26/125 (20%), Positives = 60/125 (47%), Gaps = 14/125 (11%)
Query: 114 RDRANK-SGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTS-----NIETNNQIKVEQKQ 167
+++A K I L++ +++ E++ + Q++ E E S + +T N +
Sbjct: 169 KEKARKVDAIVLKKMEEQAEKDTKAAFQKRSSGELESHTDSPEFISSSKTQNSSNPDLDP 228
Query: 168 QKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEK 227
++T ++ +T +K+K ++K++ S K E++QQ +QE +K +
Sbjct: 229 MTNANTLKETASKEPETSSKKEKKPKKKRRLS--------KKEKQQQALQQEFEKQISDS 280
Query: 228 QKTEQ 232
K+E+
Sbjct: 281 SKSEK 285
Score = 32.7 bits (73), Expect = 0.020
Identities = 24/121 (19%), Positives = 57/121 (46%), Gaps = 13/121 (10%)
Query: 148 EKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQI 207
+K+K ++ I +++ +++ E++ + Q++ E E E +S +T N
Sbjct: 168 QKEKARKVDA---IVLKKMEEQAEKDTKAAFQKRSSGELESHTDSPEFISSS--KTQNSS 222
Query: 208 KVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQ 267
+ ++T ++ +T +K+K ++K++ S K E++QQ +QE +
Sbjct: 223 NPDLDPMTNANTLKETASKEPETSSKKEKKPKKKRRLS--------KKEKQQQALQQEFE 274
Query: 268 K 268
K
Sbjct: 275 K 275
Score = 26.6 bits (57), Expect = 1.4
Identities = 21/119 (17%), Positives = 45/119 (37%), Gaps = 3/119 (2%)
Query: 97 DQSKKEVAETQKEAENARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIE 156
++++K A K+ E ++ K+ + + KT+ +
Sbjct: 170 EKARKVDAIVLKKMEEQAEKDTKAAFQKRSSGELESHTDSPEFISSSKTQNSSNPDLDPM 229
Query: 157 TNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQK 215
TN E ++ E +K ++ K+K K++ +Q+ + E QI K +K
Sbjct: 230 TNANTLKETASKEPETSSKKEKKPKKKRRLSKKEKQQQALQQ---EFEKQISDSSKSEK 285
>ref|NP_223247.1| putative SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEIN [Helicobacter
pylori J99]
Length = 317
Score = 35.0 bits (79), Expect = 0.004
Identities = 30/106 (28%), Positives = 52/106 (48%), Gaps = 11/106 (10%)
Query: 173 EKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQ 232
EK K E K K + E +K + + +E KVE+K+ E++K++ + +QK EQ
Sbjct: 111 EKPKPEP-KPKPKPEPKKPNHKHKALKKVE-----KVEEKKV-VEEKKEEKKVVEQKVEQ 163
Query: 233 EKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQK--TNNTQKDL 276
+K E++K + N + +E QE K N T++D+
Sbjct: 164 --KKIEEKKPVKKEFDPNQLSFLPKEVAPPRQENNKGLDNQTRRDI 207
Score = 30.4 bits (67), Expect = 0.099
Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 141 EKQKTEQE-KQKTSNIETNNQIKVEQKQQKTEQEK---QKTEQEKQKTEQEKQKTEQEKQ 196
EK K E + K K + N++ K +K +K E++K +K E++K ++ +QK +EK+
Sbjct: 111 EKPKPEPKPKPKPEPKKPNHKHKALKKVEKVEEKKVVEEKKEEKKVVEQKVEQKKIEEKK 170
Query: 197 KTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQ 228
NQ+ K+ +++ + Q
Sbjct: 171 PVKKEFDPNQLSFLPKEVAPPRQENNKGLDNQ 202
Score = 30.0 bits (66), Expect = 0.13
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 134 EKQKTEQE-KQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTE 192
EK K E + K K E +K + KVE+K+ E++K++ + +QK EQ +K E
Sbjct: 111 EKPKPEPKPKPKPEPKKPNHKHKALKKVEKVEEKKV-VEEKKEEKKVVEQKVEQ--KKIE 167
Query: 193 QEKQKTSNIETNNQIKVEQKQQKTEQEKQK 222
++K + N + ++ QE K
Sbjct: 168 EKKPVKKEFDPNQLSFLPKEVAPPRQENNK 197
Score = 26.9 bits (58), Expect = 1.1
Identities = 15/59 (25%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 133 QEKQKTEQEKQKTEQEKQKTSNIETNNQIKV-EQKQQKTEQEKQKTEQEKQKTEQEKQK 190
+ K K + E +K + + +E + KV E+K+++ + +QK EQ+K + ++ +K
Sbjct: 116 EPKPKPKPEPKKPNHKHKALKKVEKVEEKKVVEEKKEEKKVVEQKVEQKKIEEKKPVKK 174
Score = 26.9 bits (58), Expect = 1.1
Identities = 23/89 (25%), Positives = 41/89 (45%), Gaps = 7/89 (7%)
Query: 167 QQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQ--QKTEQEKQKTE 224
+ K K K ++ +K E EK+ E++K++ +E KVEQK+ +K +K+
Sbjct: 124 EPKKPNHKHKALKKVEKVE-EKKVVEEKKEEKKVVEQ----KVEQKKIEEKKPVKKEFDP 178
Query: 225 QEKQKTEQEKQKTEQEKQKTSNIETNNQI 253
+ +E QE K + +T I
Sbjct: 179 NQLSFLPKEVAPPRQENNKGLDNQTRRDI 207
Score = 26.2 bits (56), Expect = 1.9
Identities = 19/87 (21%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 168 QKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQK--QQKTEQEKQKTEQ 225
+K + E + + + K K K ++ +K + + K E+K +QK EQ+K + ++
Sbjct: 111 EKPKPEPKPKPKPEPKKPNHKHKALKKVEKVEEKKVVEEKKEEKKVVEQKVEQKKIEEKK 170
Query: 226 EKQKTEQEKQKTEQEKQKTSNIETNNQ 252
+K Q + K+ + NN+
Sbjct: 171 PVKKEFDPNQLSFLPKEVAPPRQENNK 197
Score = 25.4 bits (54), Expect = 3.2
Identities = 17/64 (26%), Positives = 34/64 (52%), Gaps = 6/64 (9%)
Query: 101 KEVAETQKEAENARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQ 160
K + + + N + +A K +E +E++ E++K++ + +QK EQ+K IE
Sbjct: 118 KPKPKPEPKKPNHKHKALKK-VEKVEEKKVVEEKKEEKKVVEQKVEQKK-----IEEKKP 171
Query: 161 IKVE 164
+K E
Sbjct: 172 VKKE 175
Score = 25.0 bits (53), Expect = 4.2
Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 219 EKQKTEQEKQKTEQEKQKTEQEK--QKTSNIETNNQIKVEQEQQKTEQEK--QKTNNTQK 274
EK K E + + + K+ + K +K +E ++ ++E++K ++K QK +K
Sbjct: 111 EKPKPEPKPKPKPEPKKPNHKHKALKKVEKVEEKKVVEEKKEEKKVVEQKVEQKKIEEKK 170
Query: 275 DLVKYAEQN 283
+ K + N
Sbjct: 171 PVKKEFDPN 179
Score = 23.9 bits (50), Expect = 9.3
Identities = 18/82 (21%), Positives = 37/82 (44%), Gaps = 2/82 (2%)
Query: 127 EQQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQK--QQKTEQEKQKTEQEKQKT 184
E + + + K K K ++ +K + + K E+K +QK EQ+K + ++ +K
Sbjct: 116 EPKPKPKPEPKKPNHKHKALKKVEKVEEKKVVEEKKEEKKVVEQKVEQKKIEEKKPVKKE 175
Query: 185 EQEKQKTEQEKQKTSNIETNNQ 206
Q + K+ + NN+
Sbjct: 176 FDPNQLSFLPKEVAPPRQENNK 197
>ref|NP_223159.1| putative [Helicobacter pylori J99]
Length = 181
Score = 35.0 bits (79), Expect = 0.004
Identities = 34/143 (23%), Positives = 58/143 (39%), Gaps = 15/143 (10%)
Query: 71 HPNSWFNSAI-----GVTTITAMLMNVCFADDQSKKEVAETQKEAENARDRANKSGIELE 125
H N+ F + G+ I +L+++ F K E N+ + + +G L+
Sbjct: 35 HSNALFTEQVELSLKGIVRILEVLLSLDFF-----KNANEIDSSLRNSIEWLSNAGESLK 89
Query: 126 QEQQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTE 185
+ ++ E+ + EQE T N T N IK E K+ E Q E+ + E
Sbjct: 90 TKMKEYERFFSEFNTSMHANEQEVTATLNANTEN-IKSEIKKL----ENQLIEETRMLLE 144
Query: 186 QEKQKTEQEKQKTSNIETNNQIK 208
QE QK+ + + N +K
Sbjct: 145 QETQKSVKAYNAMMGHQPQNSLK 167
Score = 26.9 bits (58), Expect = 1.1
Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 8/108 (7%)
Query: 150 QKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQ---KTEQEKQKTEQEKQKTSNIETNNQ 206
+ + I+++ + +E E K K ++ ++ + EQE T N T N
Sbjct: 65 KNANEIDSSLRNSIEWLSNAGESLKTKMKEYERFFSEFNTSMHANEQEVTATLNANTEN- 123
Query: 207 IKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIK 254
IK E K+ E Q E+ + EQE QK+ + + N +K
Sbjct: 124 IKSEIKKL----ENQLIEETRMLLEQETQKSVKAYNAMMGHQPQNSLK 167
Score = 26.9 bits (58), Expect = 1.1
Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 6/118 (5%)
Query: 188 KQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNI 247
K E + ++IE + K + E E+ +E E++ T T NI
Sbjct: 65 KNANEIDSSLRNSIEWLSNAGESLKTKMKEYERFFSEFNTSMHANEQEVTATLNANTENI 124
Query: 248 ETN-----NQIKVEQEQQKTEQEKQKTNNTQKDLVKYAEQNCQENHNQFFIKKLGIKG 300
++ NQ+ +E+ + EQE QK+ ++ + QN ++ + F L +G
Sbjct: 125 KSEIKKLENQL-IEETRMLLEQETQKSVKAYNAMMGHQPQNSLKHGLKNFNNPLSKEG 181
>ref|NP_223054.1| septum formation protein [Helicobacter pylori J99]
Length = 844
Score = 35.0 bits (79), Expect = 0.004
Identities = 40/189 (21%), Positives = 77/189 (40%), Gaps = 9/189 (4%)
Query: 101 KEVAETQKEAENARDRANKSGIE---LEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIET 157
KE+ + +A + K G E + ++++T +K+K E K+ E T N E+
Sbjct: 155 KEIYKQCLQAFSPNFSLKKEGFENTPSDSQKKETNNDKEK-ENLKENPIDENHNTPNEES 213
Query: 158 NNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTE 217
I E Q+ + ++ + ++ TN +K E KQ+ E
Sbjct: 214 FLAIPTPYNTTLNNSEPQEGLVQISPHPPTHYTIYPKRNRFDDL-TNPTLK-EPKQETKE 271
Query: 218 QE---KQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQK 274
+E K++T + + KT N +T N E + Q++ QE + N ++
Sbjct: 272 REPTLKKETPTTLKPIMPISASNTENHDKTENHKTPNHPIKEDDLQESPQENPQKENIEE 331
Query: 275 DLVKYAEQN 283
++ + QN
Sbjct: 332 NIEEKETQN 340
Score = 31.2 bits (69), Expect = 0.058
Identities = 22/113 (19%), Positives = 49/113 (42%), Gaps = 2/113 (1%)
Query: 171 EQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKT 230
++ KQ+T++ + ++E T + S T N K E + K+ QE +
Sbjct: 263 KEPKQETKEREPTLKKETPTTLKPIMPISASNTENHDKTENHKTPNHPIKEDDLQESPQE 322
Query: 231 EQEKQKTEQ--EKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDLVKYAE 281
+K+ E+ E+++T N + + + + ++ ++ N D + Y E
Sbjct: 323 NPQKENIEENIEEKETQNAPSFSPLTLTSAKKPVMVKELSENKEILDGLDYGE 375
Score = 24.3 bits (51), Expect = 7.1
Identities = 13/49 (26%), Positives = 18/49 (36%)
Query: 241 KQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDLVKYAEQNCQENHN 289
KQ N +K E + ++K N K+ E ENHN
Sbjct: 159 KQCLQAFSPNFSLKKEGFENTPSDSQKKETNNDKEKENLKENPIDENHN 207
>ref|NP_224041.1| putative [Helicobacter pylori J99]
Length = 692
Score = 34.7 bits (78), Expect = 0.005
Identities = 26/123 (21%), Positives = 54/123 (43%), Gaps = 9/123 (7%)
Query: 96 DDQSKKEVAETQKEAENARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNI 155
++++ + +E K+ AR A + ++ ++ Q+ ++ + + +K+ N
Sbjct: 7 NNENHENSSENSKDHHEARAGAFERFTNRKKRFRENAQKNAESSNHETLSHHKKEHRPNK 66
Query: 156 ETNNQIKVEQKQQKTEQEKQKTEQEKQKTE--------QEKQKTEQEKQKTSNIETNNQI 207
+ NN K + QKT + K E + K E E+ K+ +E NN+I
Sbjct: 67 KPNNHHKPKHASQKT-RNYAKEELDNNKVEGVTEILHVNERGTLGFHKELKKGVEANNKI 125
Query: 208 KVE 210
+VE
Sbjct: 126 QVE 128
Score = 31.6 bits (70), Expect = 0.044
Identities = 27/125 (21%), Positives = 56/125 (44%), Gaps = 8/125 (6%)
Query: 189 QKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKT--EQEKQKTSN 246
Q E + + N + +++ + ++ T ++K+ E ++ E +T +K+ N
Sbjct: 6 QNNENHENSSENSKDHHEARAGAFERFTNRKKRFRENAQKNAESSNHETLSHHKKEHRPN 65
Query: 247 IETNNQIKVEQEQQKTEQ--EKQKTNNTQKDLVKYAEQNCQENHNQFFIKKL--GIKGGI 302
+ NN K + QKT +++ NN + + + N E F K+L G++
Sbjct: 66 KKPNNHHKPKHASQKTRNYAKEELDNNKVEGVTEILHVN--ERGTLGFHKELKKGVEANN 123
Query: 303 AIEVE 307
I+VE
Sbjct: 124 KIQVE 128
Score = 30.8 bits (68), Expect = 0.076
Identities = 28/127 (22%), Positives = 49/127 (38%), Gaps = 22/127 (17%)
Query: 152 TSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEK-QKTEQEKQKTSNIETNNQIKVE 210
T N + N + + K E + E+ +++ ++ Q+ ++SN ET + K E
Sbjct: 2 TDNNQNNENHENSSENSKDHHEARAGAFERFTNRKKRFRENAQKNAESSNHETLSHHKKE 61
Query: 211 QKQQKTEQEKQKTEQEKQKT------EQEKQKTEQ---------------EKQKTSNIET 249
+ K K + QKT E + K E K+ +E
Sbjct: 62 HRPNKKPNNHHKPKHASQKTRNYAKEELDNNKVEGVTEILHVNERGTLGFHKELKKGVEA 121
Query: 250 NNQIKVE 256
NN+I+VE
Sbjct: 122 NNKIQVE 128
Score = 26.9 bits (58), Expect = 1.1
Identities = 18/91 (19%), Positives = 36/91 (38%), Gaps = 1/91 (1%)
Query: 198 TSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEK-QKTEQEKQKTSNIETNNQIKVE 256
T N + N + + K E + E+ +++ ++ Q+ ++SN ET + K E
Sbjct: 2 TDNNQNNENHENSSENSKDHHEARAGAFERFTNRKKRFRENAQKNAESSNHETLSHHKKE 61
Query: 257 QEQQKTEQEKQKTNNTQKDLVKYAEQNCQEN 287
K K + + YA++ N
Sbjct: 62 HRPNKKPNNHHKPKHASQKTRNYAKEELDNN 92
>ref|NP_223561.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 363
Score = 34.3 bits (77), Expect = 0.007
Identities = 21/100 (21%), Positives = 49/100 (49%)
Query: 120 SGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQ 179
S IE + QK +K ++ ++ +EQ+ + E Q ++QK + +K ++
Sbjct: 262 SAIEFYKPDQKPLDQKLSDQKPQKLSEQKALEQKISEQKPQEPLDQKLSDQKPQKPLEQK 321
Query: 180 EKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQE 219
++ +++ ++Q+ QK + + Q ++QK Q +E
Sbjct: 322 ISEQKPLDQKLSDQKPQKPLEQKISEQKPLDQKPQTPPKE 361
Score = 32.0 bits (71), Expect = 0.034
Identities = 24/89 (26%), Positives = 48/89 (52%), Gaps = 9/89 (10%)
Query: 164 EQKQQKTEQEK---QKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEK 220
+QK QK ++K QK ++K + +++ ++Q+ QK + + Q ++QK ++Q+
Sbjct: 280 DQKPQKLSEQKALEQKISEQKPQEPLDQKLSDQKPQKPLEQKISEQKPLDQKL--SDQKP 337
Query: 221 QKTEQEKQKTEQEKQKTEQEKQKTSNIET 249
QK ++K +QK +K +T ET
Sbjct: 338 QKPLEQK----ISEQKPLDQKPQTPPKET 362
Score = 31.6 bits (70), Expect = 0.044
Identities = 19/83 (22%), Positives = 43/83 (50%)
Query: 187 EKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSN 246
+++ ++Q+ QK S + Q EQK Q+ +K ++ ++ EQ+ + + QK S+
Sbjct: 275 DQKLSDQKPQKLSEQKALEQKISEQKPQEPLDQKLSDQKPQKPLEQKISEQKPLDQKLSD 334
Query: 247 IETNNQIKVEQEQQKTEQEKQKT 269
+ ++ + +QK +K +T
Sbjct: 335 QKPQKPLEQKISEQKPLDQKPQT 357
Score = 28.5 bits (62), Expect = 0.38
Identities = 20/89 (22%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 180 EKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQ---EKQK 236
+++ ++Q+ QK ++K I + Q E QK +K + E++ +EQ +++
Sbjct: 275 DQKLSDQKPQKLSEQKALEQKI--SEQKPQEPLDQKLSDQKPQKPLEQKISEQKPLDQKL 332
Query: 237 TEQEKQKTSNIETNNQIKVEQEQQKTEQE 265
++Q+ QK + + Q ++Q+ Q +E
Sbjct: 333 SDQKPQKPLEQKISEQKPLDQKPQTPPKE 361
Score = 28.5 bits (62), Expect = 0.38
Identities = 24/88 (27%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 127 EQQKTEQEKQKTEQEK---QK-TEQEKQKTSNIETNNQIKVEQKQQKTEQEK----QKTE 178
+Q+ ++Q+ QK ++K QK +EQ+ Q+ + + ++Q + +QK ++K + ++
Sbjct: 275 DQKLSDQKPQKLSEQKALEQKISEQKPQEPLDQKLSDQKPQKPLEQKISEQKPLDQKLSD 334
Query: 179 QEKQKTEQEK---QKTEQEKQKTSNIET 203
Q+ QK ++K QK +K +T ET
Sbjct: 335 QKPQKPLEQKISEQKPLDQKPQTPPKET 362
Score = 23.9 bits (50), Expect = 9.3
Identities = 13/59 (22%), Positives = 32/59 (54%)
Query: 208 KVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEK 266
K +QK + QK ++ ++ E++ +EQ+ Q+ + + ++Q + +QK ++K
Sbjct: 268 KPDQKPLDQKLSDQKPQKLSEQKALEQKISEQKPQEPLDQKLSDQKPQKPLEQKISEQK 326
>ref|NP_223659.1| putative [Helicobacter pylori J99]
Length = 677
Score = 33.9 bits (76), Expect = 0.009
Identities = 28/150 (18%), Positives = 66/150 (43%), Gaps = 7/150 (4%)
Query: 163 VEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIK-VEQKQQKTEQEKQ 221
++ + Q E+E++ EQ K ++ +K+ ++ N+ K ++ + + KQ
Sbjct: 237 IKLQLQDLEKEEKALEQIKSPQDEWDLNKALQKEYLQELKDKNKAKALDIQNNHSTPLKQ 296
Query: 222 KTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDLVKYAE 281
K + K K ++ EK+ S I+ ++++ + +E K + + +L+ + +
Sbjct: 297 KISKFKIALFNHKDTSDDEKESLS-ID-----RIDKRKPVSEHLKNMSKHELYELLGFYQ 350
Query: 282 QNCQENHNQFFIKKLGIKGGIAIEVEAECK 311
+ + N K I G+ + E E K
Sbjct: 351 KELDKKQNHSAFKNFAILNGLDRDFERETK 380
Score = 32.0 bits (71), Expect = 0.034
Identities = 59/283 (20%), Positives = 107/283 (36%), Gaps = 30/283 (10%)
Query: 155 IETNNQIKVEQ--KQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQK 212
++ N+ + + Q + KT+Q Q + + ++K+ T N +
Sbjct: 403 LDKNSHLLLAQLRNEVKTKQNTQYNTLTNPILLAKALELSKDKRPTLKTFKNAYFSARKY 462
Query: 213 QQKTEQEKQKTEQEKQK----TEQEKQKTEQEKQKTSNIETNNQIK-VEQE-QQKTEQEK 266
Q E K K K T + K Q+ Q T + ++ +EQ+ +QK E+ +
Sbjct: 463 QFMLESFKTKQNDPTYKLNDNTYELVSKQLQDYQNTMLLLAKERLLFLEQDLKQKEEEFE 522
Query: 267 QKTNNTQKDLVKYAEQNCQENHNQFFIKKLGIKGGIAIEVEAECKTPKPAKTNQTPIQPK 326
+ + K Y E + Q F+K++ I+ ++ C A T
Sbjct: 523 RAKEHYVKSSKHYRETSLSPKEKQGFLKQIKQFSKISKDILYTCNEIIGANRFLTHYDNL 582
Query: 327 HLPNSKQPHSQRGSKAQEFIAYLQKELE----FLPYSQKAIAKQVNFYKPSSIAYLELDP 382
+L + H++ Q+ I + KE ++ + +K A+ Y+ A LE
Sbjct: 583 NLEKVLE-HAKDTKLEQKEIQAITKEPNNDEPWIEFGKKEQARAKAHYQ----AMLE--- 634
Query: 383 RDFKVTEEWQKENLKIRSKAQAKMLEMRDLKPDPQAHLPTSQS 425
KE K +K QA L +L DP+AH Q+
Sbjct: 635 ----------KEKAKELAKQQANTLHSNELDDDPKAHAGLKQN 667
Score = 30.8 bits (68), Expect = 0.076
Identities = 28/139 (20%), Positives = 67/139 (48%), Gaps = 2/139 (1%)
Query: 132 EQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKT 191
EQ+ ++ E+E ++ ++ K+S + ++KQ +Q KQ ++ K +
Sbjct: 511 EQDLKQKEEEFERAKEHYVKSSKHYRETSLSPKEKQGFLKQIKQFSKISKDILYTCNEII 570
Query: 192 EQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNN 251
+ T + + N KV + + T+ E+++ + ++ ++ E K++ + + +
Sbjct: 571 GANRFLT-HYDNLNLEKVLEHAKDTKLEQKEIQAITKEPNNDEPWIEFGKKEQARAKAHY 629
Query: 252 QIKVEQEQQKTEQEKQKTN 270
Q +E+E+ K E KQ+ N
Sbjct: 630 QAMLEKEKAK-ELAKQQAN 647
Score = 28.1 bits (61), Expect = 0.49
Identities = 45/245 (18%), Positives = 87/245 (35%), Gaps = 35/245 (14%)
Query: 68 LKTHPNSWFNSAIGVTTITAMLMNVCFADDQSKKEVAETQKEAENARDRANKSGIELEQE 127
+KT N+ +N+ + L + K+ T K +NA A K LE
Sbjct: 418 VKTKQNTQYNTLTNPILLAKAL--------ELSKDKRPTLKTFKNAYFSARKYQFMLESF 469
Query: 128 QQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQE 187
KT+Q + E ++ + + + +++ EQ+ ++ E+E ++ ++
Sbjct: 470 --KTKQNDPTYKLNDNTYELVSKQLQDYQNTMLLLAKERLLFLEQDLKQKEEEFERAKEH 527
Query: 188 KQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEK-------------------QKTEQEKQ 228
K+ + ++TS Q ++Q +Q ++ K EK
Sbjct: 528 YVKSSKHYRETSLSPKEKQGFLKQIKQFSKISKDILYTCNEIIGANRFLTHYDNLNLEKV 587
Query: 229 KTEQEKQKTEQEKQKTSNIETNNQI------KVEQEQQKTEQEKQKTNNTQKDLVKYAEQ 282
+ K EQ++ + E NN K EQ + K + K+L K
Sbjct: 588 LEHAKDTKLEQKEIQAITKEPNNDEPWIEFGKKEQARAKAHYQAMLEKEKAKELAKQQAN 647
Query: 283 NCQEN 287
N
Sbjct: 648 TLHSN 652
>ref|NP_223405.1| putative [Helicobacter pylori J99]
Length = 400
Score = 33.9 bits (76), Expect = 0.009
Identities = 42/207 (20%), Positives = 84/207 (40%), Gaps = 29/207 (14%)
Query: 100 KKEVAETQKEAENARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQ--------- 150
++++ +K E R+ + L QE+ T K +KQ++ +K+
Sbjct: 66 ERQMVALKKSLEKNRNES------LVQEKVLTNYRKSLDHLQKQRSFLQKRVFDTLLEDF 119
Query: 151 ------KTSNIETNN----QIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSN 200
K N+ ++N Q+ E Q T + + QE++K + + + QK S+
Sbjct: 120 LFSQALKGQNLASSNDVILQVAFENLHQSTLSKMSQLSQEEKKLNVQALEVKSSIQKISS 179
Query: 201 IETNNQIKVEQ-KQQKTEQEKQKTEQEKQKT--EQEKQKTEQEKQK-TSNIETNNQIKVE 256
+ + + K +TEQ K +K Q E+E+Q + ++ N IK
Sbjct: 180 VIDEQKTRESTLKSLQTEQNKLILSMQKDYAIYNQRLSLLEKERQNLNALLKRLNIIKQN 239
Query: 257 QEQQKTEQEKQKTNNTQKDLVKYAEQN 283
+E ++ K+ + + V + QN
Sbjct: 240 RENEERVSLKKSSQALEVKQVASSYQN 266
Score = 32.3 bits (72), Expect = 0.026
Identities = 27/124 (21%), Positives = 57/124 (45%), Gaps = 2/124 (1%)
Query: 128 QQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQE 187
Q + Q +++EK+ Q + S+I+ + + EQK +++ + +TEQ K +
Sbjct: 147 QSTLSKMSQLSQEEKKLNVQALEVKSSIQKISSVIDEQKTRESTLKSLQTEQNKLILSMQ 206
Query: 188 KQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNI 247
K Q+ S +E Q + ++ KQ E E++ + ++ + + KQ S+
Sbjct: 207 KDYAIY-NQRLSLLEKERQ-NLNALLKRLNIIKQNRENEERVSLKKSSQALEVKQVASSY 264
Query: 248 ETNN 251
+ N
Sbjct: 265 QNIN 268
Score = 31.6 bits (70), Expect = 0.044
Identities = 30/128 (23%), Positives = 51/128 (39%), Gaps = 3/128 (2%)
Query: 148 EKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQI 207
E S + +Q+ E+K+ + + K+ +K + ++QKT + K+ E N I
Sbjct: 143 ENLHQSTLSKMSQLSQEEKKLNVQALEVKSSIQKISSVIDEQKTRESTLKSLQTEQNKLI 202
Query: 208 KVEQKQQKT-EQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQ--EQQKTEQ 264
QK Q E+E+Q ++ KQ N E + K Q E ++
Sbjct: 203 LSMQKDYAIYNQRLSLLEKERQNLNALLKRLNIIKQNRENEERVSLKKSSQALEVKQVAS 262
Query: 265 EKQKTNNT 272
Q N T
Sbjct: 263 SYQNINTT 270
Score = 31.2 bits (69), Expect = 0.058
Identities = 44/206 (21%), Positives = 79/206 (37%), Gaps = 50/206 (24%)
Query: 126 QEQQKTEQEKQKTEQEKQKTEQEK-QKTSNIETNNQIKVEQKQQKTEQEKQ----KTEQE 180
Q+ ++ Q E +KT +EK Q S + + + ++ QK E E+Q K E
Sbjct: 18 QKVSDIAKDIQHKETLLKKTHEEKNQLNSRLSSLGEAIRSKELQKVEIERQMVALKKSLE 77
Query: 181 KQKTE---QEKQKTEQEKQ-----------------------------KTSNIETNN--- 205
K + E QEK T K K N+ ++N
Sbjct: 78 KNRNESLVQEKVLTNYRKSLDHLQKQRSFLQKRVFDTLLEDFLFSQALKGQNLASSNDVI 137
Query: 206 -QIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQ 264
Q+ E Q T + + QE++K + + + QK S++ ++QKT +
Sbjct: 138 LQVAFENLHQSTLSKMSQLSQEEKKLNVQALEVKSSIQKISSV---------IDEQKTRE 188
Query: 265 EKQKTNNTQKDLVKYAEQNCQENHNQ 290
K+ T+++ + + Q +NQ
Sbjct: 189 STLKSLQTEQNKLILSMQKDYAIYNQ 214
Score = 30.8 bits (68), Expect = 0.076
Identities = 34/147 (23%), Positives = 62/147 (42%), Gaps = 21/147 (14%)
Query: 150 QKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQK-----TEQEKQKTEQEKQKTS---NI 201
QK S+I + Q K E +KT +EK + +E QK E E+Q + ++
Sbjct: 18 QKVSDIAKDIQHK-ETLLKKTHEEKNQLNSRLSSLGEAIRSKELQKVEIERQMVALKKSL 76
Query: 202 ETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTE--------QEKQKTSNIETNN-- 251
E N + Q++ T K +KQ++ +K+ + + K N+ ++N
Sbjct: 77 EKNRNESLVQEKVLTNYRKSLDHLQKQRSFLQKRVFDTLLEDFLFSQALKGQNLASSNDV 136
Query: 252 --QIKVEQEQQKTEQEKQKTNNTQKDL 276
Q+ E Q T + + + +K L
Sbjct: 137 ILQVAFENLHQSTLSKMSQLSQEEKKL 163
>ref|NP_223560.1| putative [Helicobacter pylori J99]
Length = 524
Score = 33.5 bits (75), Expect = 0.012
Identities = 37/178 (20%), Positives = 71/178 (39%), Gaps = 23/178 (12%)
Query: 97 DQSKKEVAETQKEAENARDRANKSGIELEQEQQKTEQEKQKTEQE---------KQKTEQ 147
++ KE+++ +++A+ A ++ Q KT K T +E KQ+ ++
Sbjct: 345 EEKTKEISDNKEKAKETNSSAQS--VQNTQASDKTSDNKSTTPKETIRHFTQQLKQEIQE 402
Query: 148 EKQKTSNIETN----NQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSN--- 200
K S I + KVE QK + + + + Q +Q+ + + N
Sbjct: 403 YKPPMSKISMDLFPKELGKVEVTIQKVGKNLKVSVISHNNSLQTFLDNQQDLKNSLNALG 462
Query: 201 -----IETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQI 253
+ + EQ+ K + ++ EQE ++ K+ QE N ET+ QI
Sbjct: 463 FEGVDLSFSQDSSKEQQAPKDQPKEPFKEQELTPLKENALKSYQENTDHENQETSMQI 520
Score = 31.6 bits (70), Expect = 0.044
Identities = 47/270 (17%), Positives = 109/270 (39%), Gaps = 18/270 (6%)
Query: 77 NSAIGVTTITAMLMNVCFADDQSKKEV--AETQKEAENARDRANKSGIELEQEQQKTEQE 134
N A ++++L ++ + Q+K+ +K+ ++ + I+ ++ K + E
Sbjct: 235 NDAKNTANLSSVLQSLEKKEPQNKEHANPPNNEKKTPPLKEALQMNAIKRDKTLSKKKPE 294
Query: 135 KQ----KTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQK 190
K KT+ E ++T + + ++++KT++
Sbjct: 295 KTPIHAKTQTIAPSATPENAPKIPLKTLPLMPLIGANPPPNDNAPTPLEKEEKTKEISDN 354
Query: 191 TEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQE--KQKTEQEKQKTEQEKQKTSNIE 248
E+ K+ S+ ++ ++ Q KT K T +E + T+Q KQ+ ++ K S I
Sbjct: 355 KEKAKETNSSAQS---VQNTQASDKTSDNKSTTPKETIRHFTQQLKQEIQEYKPPMSKIS 411
Query: 249 TN----NQIKVEQEQQKTEQEKQKTNNTQKDLVKYAEQNCQENHNQFFIKKLGIKG-GIA 303
+ KVE QK + + + + + ++ N Q+ N + LG +G ++
Sbjct: 412 MDLFPKELGKVEVTIQKVGKNLKVSVISHNNSLQTFLDNQQDLKNS--LNALGFEGVDLS 469
Query: 304 IEVEAECKTPKPAKTNQTPIQPKHLPNSKQ 333
++ + P + P + + L K+
Sbjct: 470 FSQDSSKEQQAPKDQPKEPFKEQELTPLKE 499
Score = 30.8 bits (68), Expect = 0.076
Identities = 30/173 (17%), Positives = 64/173 (36%), Gaps = 6/173 (3%)
Query: 124 LEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQK 183
L + K Q +K E + ++ +N NN+ K ++ + K ++ K
Sbjct: 232 LTKNDAKNTANLSSVLQSLEKKEPQNKEHAN-PPNNEKKTPPLKEALQMNAIKRDKTLSK 290
Query: 184 TEQEKQKTEQEKQKTSNIET-NNQIKVEQK----QQKTEQEKQKTEQEKQKTEQEKQKTE 238
+ EK + Q + T N K+ K + E+E++ E
Sbjct: 291 KKPEKTPIHAKTQTIAPSATPENAPKIPLKTLPLMPLIGANPPPNDNAPTPLEKEEKTKE 350
Query: 239 QEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDLVKYAEQNCQENHNQF 291
K ETN+ + Q Q +++ + T K+ +++ Q ++ ++
Sbjct: 351 ISDNKEKAKETNSSAQSVQNTQASDKTSDNKSTTPKETIRHFTQQLKQEIQEY 403
Score = 28.5 bits (62), Expect = 0.38
Identities = 30/176 (17%), Positives = 65/176 (36%), Gaps = 32/176 (18%)
Query: 126 QEQQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTE 185
++++KT++ E+ K+ T Q N + +++ + E + T+Q KQ+ +
Sbjct: 343 EKEEKTKEISDNKEKAKE-TNSSAQSVQNTQASDKTSDNKSTTPKETIRHFTQQLKQEIQ 401
Query: 186 QEKQKTEQ---------------------EKQKTSNIETNNQIKVEQKQQKT-------- 216
+ K + + K S I NN ++ Q+
Sbjct: 402 EYKPPMSKISMDLFPKELGKVEVTIQKVGKNLKVSVISHNNSLQTFLDNQQDLKNSLNAL 461
Query: 217 --EQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTN 270
E Q+ K +Q + +E K + + ++ Q+ T+ E Q+T+
Sbjct: 462 GFEGVDLSFSQDSSKEQQAPKDQPKEPFKEQELTPLKENALKSYQENTDHENQETS 517
>ref|NP_222882.1| putative PEPTIDYL-PROLYL CIS-TRANS ISOMERASE [Helicobacter pylori
J99]
Length = 299
Score = 33.5 bits (75), Expect = 0.012
Identities = 32/154 (20%), Positives = 66/154 (42%), Gaps = 11/154 (7%)
Query: 119 KSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTE 178
KS ++ +++ + E+EK+ ++ +T+ +E N+ K E+ Q E +
Sbjct: 55 KSDFDMIKQRNPNFDFDKLKEKEKEALIEQAIRTALVE--NEAKAEKLNQTPEFKAMMEA 112
Query: 179 QEKQKTEQ---EKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQ------KTEQEKQK 229
+KQ + +KQ E +K + E + + Q +QE KTE E ++
Sbjct: 113 VKKQALVEFWAKKQAEEVKKIQIPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKR 172
Query: 230 TEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTE 263
E K + K++ IE N+ ++ + +
Sbjct: 173 IISEIDKQPKAKKEAKFIELANRDTIDPNSKNAQ 206
>ref|NP_222874.1| putative [Helicobacter pylori J99]
Length = 157
Score = 33.5 bits (75), Expect = 0.012
Identities = 29/104 (27%), Positives = 51/104 (48%), Gaps = 15/104 (14%)
Query: 202 ETNNQIKVEQKQQKTEQEKQKTEQEKQ---KTEQEKQKTEQEKQKTSNIETNNQIKVEQE 258
ET N+I +K KT + T Q+ KT Q T K + +E N K+E +
Sbjct: 13 ETLNEI---EKMAKTIDDGFNTAQKTPSFFKTPSHLQNTPNSKNANTPLEPKNAAKIETQ 69
Query: 259 QQKTEQEKQKTNNTQKDLVKYAEQNCQENHNQFFI--KKLGIKG 300
++ TE++++ K+++ E+ QEN Q I +++ +KG
Sbjct: 70 EKITEEKEE-----AKEII--TEEIVQENPTQALIPNERVFLKG 106
Score = 32.7 bits (73), Expect = 0.020
Identities = 23/81 (28%), Positives = 39/81 (47%), Gaps = 6/81 (7%)
Query: 156 ETNNQIKVEQKQQKTEQEKQKTEQEKQ---KTEQEKQKTEQEKQKTSNIETNNQIKVEQK 212
ET N+I +K KT + T Q+ KT Q T K + +E N K+E +
Sbjct: 13 ETLNEI---EKMAKTIDDGFNTAQKTPSFFKTPSHLQNTPNSKNANTPLEPKNAAKIETQ 69
Query: 213 QQKTEQEKQKTEQEKQKTEQE 233
++ TE++++ E ++ QE
Sbjct: 70 EKITEEKEEAKEIITEEIVQE 90
Score = 29.3 bits (64), Expect = 0.22
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 137 KTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQE 187
KT Q T K + +E N K+E +++ TE++++ E ++ QE
Sbjct: 40 KTPSHLQNTPNSKNANTPLEPKNAAKIETQEKITEEKEEAKEIITEEIVQE 90
>ref|NP_223322.1| putative [Helicobacter pylori J99]
Length = 413
Score = 33.1 bits (74), Expect = 0.015
Identities = 39/166 (23%), Positives = 67/166 (39%), Gaps = 22/166 (13%)
Query: 124 LEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQK 183
LE +Q++ +K K QE + E + ++ N + N+ E+K++ + K + E
Sbjct: 29 LEGRKQESSLDK-KIRQELKSKELKNKELKNKDLKNK---EEKKETKAKRKPRAEVHHGD 84
Query: 184 TEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTE-QEKQ 242
+ K K K S+ NQ V+ K E EK T Q +K ++ ++
Sbjct: 85 AKNPTPKITPPKIKGSSKGVQNQ-GVQNNAPKPE-EKDTTPQATEKNKETSPSSQFNSIF 142
Query: 243 KTSNIETNNQIK---------------VEQEQQKTEQEKQKTNNTQ 273
N TNN ++ + Q + EQEK K + Q
Sbjct: 143 GNPNNATNNTLEDKVVGGISLLVNGSPITLYQIQEEQEKSKVSKAQ 188
>ref|NP_223759.1| putative [Helicobacter pylori J99]
Length = 267
Score = 32.7 bits (73), Expect = 0.020
Identities = 35/161 (21%), Positives = 58/161 (35%), Gaps = 13/161 (8%)
Query: 123 ELEQEQQKTEQEKQKT---EQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQ 179
E EQE T E K+E +K + IET ++ + + Q
Sbjct: 101 EFNTSMHANEQEVTNTLNANAENIKSEIKKLENQLIETTTRLLTSYQIFLNQARDNANNQ 160
Query: 180 EKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQK--- 236
+ Q + Q K +N +NN Q Q T + KT + + + Q
Sbjct: 161 ITKNKTQSLEAITQAKNNANNEISNN-----QTQAITNITEAKTNANNEISNNQTQAITN 215
Query: 237 -TEQEKQKTSNIETNNQIKVEQ-EQQKTEQEKQKTNNTQKD 275
E ++ T+ I N Q + Q+KT+ + T + D
Sbjct: 216 INEAKESATTQINANKQEAINNITQEKTQATSEITEAKKTD 256
Score = 27.7 bits (60), Expect = 0.64
Identities = 26/136 (19%), Positives = 50/136 (36%), Gaps = 3/136 (2%)
Query: 54 SNWICGNVKTADDYLKTHPNSWFNSAIGVTTITAMLMNVCF--ADDQSKKEVAETQKEAE 111
+N + N + +K N + + T + +N A++Q K ++ +
Sbjct: 114 TNTLNANAENIKSEIKKLENQLIETTTRLLTSYQIFLNQARDNANNQITKNKTQSLEAIT 173
Query: 112 NARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTE 171
A++ AN I Q Q T + KT + + + Q +NI + Q +
Sbjct: 174 QAKNNANNE-ISNNQTQAITNITEAKTNANNEISNNQTQAITNINEAKESATTQINANKQ 232
Query: 172 QEKQKTEQEKQKTEQE 187
+ QEK + E
Sbjct: 233 EAINNITQEKTQATSE 248
>ref|NP_222962.1| putative [Helicobacter pylori J99]
Length = 222
Score = 32.0 bits (71), Expect = 0.034
Identities = 22/116 (18%), Positives = 56/116 (47%), Gaps = 4/116 (3%)
Query: 164 EQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQ----QKTEQE 219
E+ Q+ Q E +K + +++ ++ +++Q ++T N +++K +K ++
Sbjct: 17 EEAAQELLQCSAIFESKKAELKEDLRQLSEKEQSLRILQTENARLLDEKSDLLNKKEKEI 76
Query: 220 KQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKD 275
+K + K E K +EK++ N+ N+ + + +Q + + +T + KD
Sbjct: 77 DEKLKNLAAKEEAFKTLQTEEKKRLKNLIEENEGILREIKQAKDSKIGETYSKMKD 132
>ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [Helicobacter pylori J99]
Length = 681
Score = 32.0 bits (71), Expect = 0.034
Identities = 37/181 (20%), Positives = 83/181 (45%), Gaps = 15/181 (8%)
Query: 128 QQKTEQEKQ----KTEQEKQKTEQEKQKTSNIETNNQIKVEQK--QQKTEQEKQKTEQEK 181
++K +EK K E + + T++ K K SN E N E K + KT++ K K ++
Sbjct: 2 KKKANEEKAPKRAKQEAKTEATQENKAKESNKENKNNKAKEGKIKEAKTKESKVKETAKE 61
Query: 182 QKTEQEKQKTEQEKQKTSN-----IETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQK 236
++ E ++ +N + + I++ K Q K K ++ QK +++
Sbjct: 62 PIPVKKLSFNEALEELFANSLSDCVSYESIIQISAKVPTLAQIK-KIKELCQKYQKKLVS 120
Query: 237 TEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDLVKYAEQNCQENHNQFFIKKL 296
+ + +K + I+ +IK +E+QK E+ + + E + ++ + +++++
Sbjct: 121 SSEYAKKLNAID---KIKNTEEKQKVLDEELEDGYDFLKEKDFLEWSRSDSPVRMYLREM 177
Query: 297 G 297
G
Sbjct: 178 G 178
Score = 24.3 bits (51), Expect = 7.1
Identities = 14/85 (16%), Positives = 38/85 (44%)
Query: 151 KTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVE 210
K + I ++K + + E ++ +K +E ++ E+ K+ S + KV+
Sbjct: 220 KDALINRERRVKELFRSFDDDDENSVSDPKKDDDSEEDEENEERKKVVSEKDKKRVEKVQ 279
Query: 211 QKQQKTEQEKQKTEQEKQKTEQEKQ 235
+ + ++ K++ + + EK+
Sbjct: 280 ESFKALDKAKKEWLKALEAPIDEKE 304
>ref|NP_224131.1| putative [Helicobacter pylori J99]
Length = 115
Score = 31.6 bits (70), Expect = 0.044
Identities = 20/87 (22%), Positives = 35/87 (39%), Gaps = 13/87 (14%)
Query: 185 EQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKT 244
+ E +K+ Q Q + NNQI K K K E E++ + K+
Sbjct: 22 KDEPKKSSQSHQNNTKTTQNNQINQPNKDIK-------------KIEHEEEDEKVTKEVN 68
Query: 245 SNIETNNQIKVEQEQQKTEQEKQKTNN 271
I N+I ++ + +++TNN
Sbjct: 69 DLINNENKIDEINNEENADPSQKRTNN 95
Score = 29.3 bits (64), Expect = 0.22
Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 12/87 (13%)
Query: 139 EQEKQKTEQEKQKTSNIETNNQIKVEQKQQKT---EQEKQKTEQEKQKTEQEKQKTEQEK 195
+ E +K+ Q Q + NNQI K K E+E +K +E + K +
Sbjct: 22 KDEPKKSSQSHQNNTKTTQNNQINQPNKDIKKIEHEEEDEKVTKEVNDLINNENKID--- 78
Query: 196 QKTSNIETNNQIKVEQKQQKTEQEKQK 222
E NN+ + Q++T Q+
Sbjct: 79 ------EINNEENADPSQKRTNNVLQR 99
>ref|NP_223684.1| METHIONYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 656
Score = 31.6 bits (70), Expect = 0.044
Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 13/111 (11%)
Query: 199 SNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQE 258
S IE +I+ +K +K E+ ++ ++ +K E+EK QE +IE +++++
Sbjct: 507 SKIEKIEKIEKIEKIEKIEKGEEALAEKAEKKEKEKAPPTQENY--ISIEDFKKVEIKVG 564
Query: 259 QQKTEQEKQKTNNTQKDLVKYAEQNCQENHNQFFIKKLGIKGGIAIEVEAE 309
K Q +K+N + V E ++ I GIA++ E E
Sbjct: 565 LIKEAQRIEKSNKLLRLKVDLGENRLRQ-----------IISGIALDYEPE 604
Score = 26.9 bits (58), Expect = 1.1
Identities = 18/73 (24%), Positives = 38/73 (51%), Gaps = 2/73 (2%)
Query: 153 SNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQK 212
S IE +I+ +K +K E+ ++ ++ +K E+EK QE +IE +++++
Sbjct: 507 SKIEKIEKIEKIEKIEKIEKGEEALAEKAEKKEKEKAPPTQENY--ISIEDFKKVEIKVG 564
Query: 213 QQKTEQEKQKTEQ 225
K Q +K+ +
Sbjct: 565 LIKEAQRIEKSNK 577
>ref|NP_223520.1| putative [Helicobacter pylori J99]
Length = 153
Score = 31.6 bits (70), Expect = 0.044
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 102 EVAETQKEAENARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQI 161
E+ Q+E E+ R+ K +EL+Q Q+ ++K + KQ+ Q+K + N +N
Sbjct: 4 ELNAYQQEIEDTREVLKKIRLELKQVQEILRKKKSVLKGLKQEICQKKLEKENFRSN--- 60
Query: 162 KVEQKQQKTEQE 173
++ Q TE++
Sbjct: 61 ---KETQNTEED 69
Score = 28.1 bits (61), Expect = 0.49
Identities = 16/63 (25%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 171 EQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKT 230
+QE + T + +K E ++ ++ +K ++ +K E Q+K E+E ++ +E Q T
Sbjct: 9 QQEIEDTREVLKKIRLELKQVQEILRKKKSVLKG--LKQEICQKKLEKENFRSNKETQNT 66
Query: 231 EQE 233
E++
Sbjct: 67 EED 69
Score = 26.2 bits (56), Expect = 1.9
Identities = 31/158 (19%), Positives = 62/158 (38%), Gaps = 12/158 (7%)
Query: 124 LEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQK 183
++ E +QE + T + +K E ++ I K K K E ++K E+E +
Sbjct: 1 MQDELNAYQQEIEDTREVLKKIRLELKQVQEILRKK--KSVLKGLKQEICQKKLEKENFR 58
Query: 184 TEQEKQKTEQE------KQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKT 237
+ +E Q TE++ ++ +NQ+ + + ++ E + E K
Sbjct: 59 SNKETQNTEEDVIFPKALEEVEVYAKDNQVIMAKPCKRLFNEGLYLQYRSVLRENRLLKN 118
Query: 238 EQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKD 275
K+ N+ +K+E E + + N KD
Sbjct: 119 HLSKKDFE----NSLLKIELRDLHKEIKLYQVQNLLKD 152
>ref|NP_223629.1| putative [Helicobacter pylori J99]
Length = 487
Score = 31.2 bits (69), Expect = 0.058
Identities = 35/165 (21%), Positives = 64/165 (38%), Gaps = 13/165 (7%)
Query: 136 QKTEQEKQKTEQEKQKTSNIETNNQI---KVEQKQQKTEQEKQKTEQEKQKTEQEKQKTE 192
+KT+ ++ + K K S ++ ++ K Q+Q K + QK ++ ++ +K
Sbjct: 239 EKTDLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLNMQKANEKALRSYIALKKGN 298
Query: 193 QEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQ 252
+ T + E NN + QK K E K E K ++ +Q
Sbjct: 299 AQNYTTQDFEKNNSPYTAEITQKLTALK----------PLEVLKPEPFKDGFIVVQLVSQ 348
Query: 253 IKVEQEQQKTEQEKQKTNNTQKDLVKYAEQNCQENHNQFFIKKLG 297
IK E + + KT TQ+ + + +E F K +G
Sbjct: 349 IKDELQNFDEAKSALKTRLTQEKTLMALQTLAKEKLKDFKGKSVG 393
>ref|NP_223283.1| DNA MISMATCH REPAIR PROTEIN [Helicobacter pylori J99]
Length = 762
Score = 31.2 bits (69), Expect = 0.058
Identities = 28/104 (26%), Positives = 41/104 (38%), Gaps = 6/104 (5%)
Query: 132 EQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKT 191
++EK E T + + K N N +K +Q+ + E EKQK +K
Sbjct: 512 DKEKLNVLIENSSTLERELKQKNEHLENALK----EQEDLKNAWLLEMEKQKEIFHHKKL 567
Query: 192 EQEK--QKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQE 233
E EK Q+ NI + + E K K KT+QE
Sbjct: 568 ELEKSYQQALNILKSEVASKDTSSMHKEIHKASEILNKHKTDQE 611
Score = 25.8 bits (55), Expect = 2.4
Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 18/106 (16%)
Query: 178 EQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKT 237
++EK E T + + K N N +K +Q+ + E EKQK +K
Sbjct: 512 DKEKLNVLIENSSTLERELKQKNEHLENALK----EQEDLKNAWLLEMEKQKEIFHHKKL 567
Query: 238 EQEK--QKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDLVKYAE 281
E EK Q+ NI K+E + T++ K++ K +E
Sbjct: 568 ELEKSYQQALNI------------LKSEVASKDTSSMHKEIHKASE 601
>ref|NP_223664.1| putative [Helicobacter pylori J99]
Length = 466
Score = 30.4 bits (67), Expect = 0.099
Identities = 45/231 (19%), Positives = 82/231 (35%), Gaps = 34/231 (14%)
Query: 103 VAETQKEAENARDRANK---------------------SGIELEQEQQKTEQEKQKTEQE 141
+ E K A++ DRAN+ S + + Q E+ + +Q
Sbjct: 57 ITERIKLAQDTLDRANQTLNSINKVNDVLNKTNQFLTGSILSIPNPMQYVEKIQSFAKQV 116
Query: 142 KQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTS-- 199
+ TE+ K+ N + NQI ++ +K + Q+ TE+ + K K S
Sbjct: 117 QANTERIKENAQNYDIRNQIAAKRISEKCPELNWDVSQDASPTEKNLHQFFTSKGKESAN 176
Query: 200 --------NIETNNQIKVEQKQQKTEQEKQKTEQ---EKQKTEQEKQKTEQEKQKTSNIE 248
N N QI + + E +K E K+ + Q T +
Sbjct: 177 TKALKDFANAIGNTQISTANDLGAGLRGRALLEYICIQKGNLEAAKKIQLLDSQMTLALL 236
Query: 249 TNNQIKVEQEQQKTEQEKQKTNNTQKDLVKYAEQNCQENHNQFFIKKLGIK 299
N+ E+ + + E+ K++ + VK Q+ +LG+K
Sbjct: 237 NNDYTAYEKLRAEKEELKRQIASNVYAKVKQLVVASQDRAFSQMDNELGVK 287
>ref|NP_223444.1| putative TYPE I RESTRICTION ENZYME (SPECIFICITY SUBUNIT)
[Helicobacter pylori J99]
Length = 454
Score = 30.4 bits (67), Expect = 0.099
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 5/94 (5%)
Query: 368 NFYKPSSIAYLELDPRDFKVTEEWQKENLKIRSKAQAKMLEMRDLKPDPQAHLPTSQSLL 427
N + PS +L+ RD+ + K + +K L ++ P P L Q ++
Sbjct: 123 NLFNPS---FLKHFLRDYNFRKNISKVANGVTRFNVSKQLLLKITIPIPP--LEIQQEIV 177
Query: 428 FVQKIFADVNKEIEAVANTEKKAEKAGYGYSKRM 461
+ F ++N E+ NTE A K Y Y + M
Sbjct: 178 TILDAFTELNTELNTELNTELNARKKQYQYYQNM 211
>ref|NP_223038.1| putative [Helicobacter pylori J99]
Length = 112
Score = 30.4 bits (67), Expect = 0.099
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Query: 146 EQEKQKTSN--IETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIET 203
+Q K SN + + ++K QK ++ K +++ E + E++ E
Sbjct: 15 KQTIHKNSNEAFQKTKRALFKEKSQKIREQAVKIVEKRLIKENMQLSDFNEEELKIMFEA 74
Query: 204 NNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEK 241
+ +EQ K +EKQ+ + K EK EQEK
Sbjct: 75 EEKRLLEQIHAKELKEKQEKTTKHFKEVWEKGDNEQEK 112
Score = 26.9 bits (58), Expect = 1.1
Identities = 25/97 (25%), Positives = 43/97 (43%), Gaps = 6/97 (6%)
Query: 105 ETQKEAENARDRANKSGIELEQEQQKTEQ-----EKQKTEQEKQKTE-QEKQKTSNIETN 158
+T + N + K + E+ Q+ EQ EK+ ++ Q ++ E++ E
Sbjct: 16 QTIHKNSNEAFQKTKRALFKEKSQKIREQAVKIVEKRLIKENMQLSDFNEEELKIMFEAE 75
Query: 159 NQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEK 195
+ +EQ K +EKQ+ + K EK EQEK
Sbjct: 76 EKRLLEQIHAKELKEKQEKTTKHFKEVWEKGDNEQEK 112
Score = 25.0 bits (53), Expect = 4.2
Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 11/89 (12%)
Query: 132 EQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKT 191
+++ QK ++ K +++ N++ ++ + E K +EK+ EQ K +EKQ+
Sbjct: 35 KEKSQKIREQAVKIVEKRLIKENMQLSDFNEEELKIMFEAEEKRLLEQIHAKELKEKQE- 93
Query: 192 EQEKQKTSNIETNNQIKVEQKQQKTEQEK 220
+T K ++ EQEK
Sbjct: 94 ----------KTTKHFKEVWEKGDNEQEK 112
>ref|NP_223569.1| putative IRON-REGULATED OUTER MEMBRANE PROTEIN [Helicobacter pylori
J99]
Length = 815
Score = 29.6 bits (65), Expect = 0.17
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 171 EQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIET--------NNQIKVEQKQQKTEQEKQ 221
E E ++ E+E++KTE+ K K + + + T NNQ + K+ + Q Q
Sbjct: 23 ELEAKEEEKEEKKTERNKDKEKNAQHTLGKVTTQAAKIFNYNNQTTISSKELERRQANQ 81
Score = 29.6 bits (65), Expect = 0.17
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 125 EQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIET--------NNQIKVEQKQQKTEQEKQ 175
E E ++ E+E++KTE+ K K + + + T NNQ + K+ + Q Q
Sbjct: 23 ELEAKEEEKEEKKTERNKDKEKNAQHTLGKVTTQAAKIFNYNNQTTISSKELERRQANQ 81
Score = 29.3 bits (64), Expect = 0.22
Identities = 18/81 (22%), Positives = 33/81 (40%)
Query: 132 EQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKT 191
E E ++ E+E++KTE+ K K N + Q + Q T K+ ++ +
Sbjct: 23 ELEAKEEEKEEKKTERNKDKEKNAQHTLGKVTTQAAKIFNYNNQTTISSKELERRQANQI 82
Query: 192 EQEKQKTSNIETNNQIKVEQK 212
++ NI + QK
Sbjct: 83 SDMFRRNPNINVGGGAVIAQK 103
Score = 28.1 bits (61), Expect = 0.49
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 217 EQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIET--------NNQIKVEQEQQKTEQEKQ 267
E E ++ E+E++KTE+ K K + + + T NNQ + ++ + Q Q
Sbjct: 23 ELEAKEEEKEEKKTERNKDKEKNAQHTLGKVTTQAAKIFNYNNQTTISSKELERRQANQ 81
Score = 27.7 bits (60), Expect = 0.64
Identities = 17/81 (20%), Positives = 33/81 (39%)
Query: 178 EQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKT 237
E E ++ E+E++KTE+ K K N + Q + Q T K+ ++ +
Sbjct: 23 ELEAKEEEKEEKKTERNKDKEKNAQHTLGKVTTQAAKIFNYNNQTTISSKELERRQANQI 82
Query: 238 EQEKQKTSNIETNNQIKVEQE 258
++ NI + Q+
Sbjct: 83 SDMFRRNPNINVGGGAVIAQK 103
Score = 26.6 bits (57), Expect = 1.4
Identities = 12/27 (44%), Positives = 16/27 (58%)
Query: 256 EQEQQKTEQEKQKTNNTQKDLVKYAEQ 282
E+E++KTE+ K K N Q L K Q
Sbjct: 30 EKEEKKTERNKDKEKNAQHTLGKVTTQ 56
>ref|NP_223427.1| putative PROBABLE N-ACETYLMURAMOYL-L-ALANINE AMIDASE [Helicobacter
pylori J99]
Length = 469
Score = 29.6 bits (65), Expect = 0.17
Identities = 26/112 (23%), Positives = 53/112 (47%), Gaps = 10/112 (8%)
Query: 166 KQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTE- 224
K Q + + ++E +K +++ K K S + + K K++ ++E K E
Sbjct: 136 KHQTPKPTPKPIKKEAKKAKEKTTKHAHSKHAHSPLNERSAKKEIPKKEIPKKEIPKKEI 195
Query: 225 -----QEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQ---KTEQEKQK 268
+K+ ++E K E K++ N E+ NQI + ++ KT+++K K
Sbjct: 196 PKKEIPKKEIPKKEIPKKEIPKKEAEN-ESKNQIFIAEKNDTWIKTKRKKHK 246
Score = 29.6 bits (65), Expect = 0.17
Identities = 22/102 (21%), Positives = 53/102 (51%), Gaps = 5/102 (4%)
Query: 124 LEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQK 183
+++E +K +++ K K ++++ E + ++ +K+ ++ +K +K+
Sbjct: 147 IKKEAKKAKEKTTKHAHSKHAHSPLNERSAKKEIPKK-EIPKKEIPKKEIPKKEIPKKEI 205
Query: 184 TEQEKQKTEQEKQKTSNIETNNQIKVEQKQQ---KTEQEKQK 222
++E K E K++ N E+ NQI + +K KT+++K K
Sbjct: 206 PKKEIPKKEIPKKEAEN-ESKNQIFIAEKNDTWIKTKRKKHK 246
Score = 25.8 bits (55), Expect = 2.4
Identities = 20/75 (26%), Positives = 37/75 (48%), Gaps = 4/75 (5%)
Query: 105 ETQKEAENARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVE 164
E + E + K I ++ +K +K+ ++E K E K++ N E+ NQI +
Sbjct: 173 ERSAKKEIPKKEIPKKEIPKKEIPKKEIPKKEIPKKEIPKKEIPKKEAEN-ESKNQIFIA 231
Query: 165 QKQQ---KTEQEKQK 176
+K KT+++K K
Sbjct: 232 EKNDTWIKTKRKKHK 246
>ref|NP_222954.1| putative [Helicobacter pylori J99]
Length = 362
Score = 29.6 bits (65), Expect = 0.17
Identities = 19/101 (18%), Positives = 45/101 (43%), Gaps = 7/101 (6%)
Query: 162 KVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQ 221
K++++ +K + +Q++E+ K + E+ KQ+ +++ N+IK + E +
Sbjct: 233 KIKEQIEKVQIARQESERVKYEVERSKQEAQKQAALAKGEADANRIKAQGVADAIVIEAK 292
Query: 222 KTEQEKQKTEQ-------EKQKTEQEKQKTSNIETNNQIKV 255
Q Q ++ E + Q ++TNN ++
Sbjct: 293 AKSQANLSISQSLSDKLLRLRQIEVQGQFNEALKTNNNAQI 333
Score = 28.1 bits (61), Expect = 0.49
Identities = 11/49 (22%), Positives = 29/49 (58%)
Query: 208 KVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVE 256
K++++ +K + +Q++E+ K + E+ KQ+ +++ N+IK +
Sbjct: 233 KIKEQIEKVQIARQESERVKYEVERSKQEAQKQAALAKGEADANRIKAQ 281
Score = 23.9 bits (50), Expect = 9.3
Identities = 17/89 (19%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
Query: 128 QQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQ- 186
+Q++E+ K + E+ KQ+ +++ N+IK + E + Q Q
Sbjct: 245 RQESERVKYEVERSKQEAQKQAALAKGEADANRIKAQGVADAIVIEAKAKSQANLSISQS 304
Query: 187 ------EKQKTEQEKQKTSNIETNNQIKV 209
++ E + Q ++TNN ++
Sbjct: 305 LSDKLLRLRQIEVQGQFNEALKTNNNAQI 333
>ref|NP_223204.1| cag island protein [Helicobacter pylori J99]
Length = 306
Score = 29.3 bits (64), Expect = 0.22
Identities = 23/101 (22%), Positives = 43/101 (41%), Gaps = 7/101 (6%)
Query: 187 EKQKTEQEKQKTSNI----ETNNQIKVEQKQQKTEQEKQKTE---QEKQKTEQEKQKTEQ 239
+K+ T++EK+ +N N++ +VEQ Q+ E ++K Q+K + Q+ +
Sbjct: 54 DKEITKEEKEFATNALREKLRNDRARVEQIQKNIEAFEKKNNSSVQKKAAKHRGLQELNE 113
Query: 240 EKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDLVKYA 280
N N E + K + + N + VK A
Sbjct: 114 INANPLNDNPNGNSSTETKSNKDDNFDEMINKVNESFVKPA 154
Score = 26.6 bits (57), Expect = 1.4
Identities = 23/115 (20%), Positives = 47/115 (40%), Gaps = 7/115 (6%)
Query: 141 EKQKTEQEKQKTSNI----ETNNQIKVEQKQQKTEQEKQKTE---QEKQKTEQEKQKTEQ 193
+K+ T++EK+ +N N++ +VEQ Q+ E ++K Q+K + Q+ +
Sbjct: 54 DKEITKEEKEFATNALREKLRNDRARVEQIQKNIEAFEKKNNSSVQKKAAKHRGLQELNE 113
Query: 194 EKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIE 248
N N E K K + + + + + ++ +T IE
Sbjct: 114 INANPLNDNPNGNSSTETKSNKDDNFDEMINKVNESFVKPAAPLVPDEWRTPEIE 168
>ref|NP_223534.1| putative [Helicobacter pylori J99]
Length = 614
Score = 28.9 bits (63), Expect = 0.29
Identities = 25/136 (18%), Positives = 61/136 (44%), Gaps = 3/136 (2%)
Query: 92 VCFADDQSKKEVAETQKEAENARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQK 151
VC+A + K + + A + + A+ + +E EK K++ + ++Q
Sbjct: 380 VCYAKEFECKYLERAKVYANSVKVEASAGSVVYAKE---IALEKLKSDNKLYFSKQCWID 436
Query: 152 TSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQ 211
+ N I ++ ++E + +Q+ + +K + Q +++ NNQ+ +E+
Sbjct: 437 EVDGNGNRFIFYAFGGRENQEELKNAKQKLNALGVKSKKIIAQHQSLNHLVKNNQVIMEK 496
Query: 212 KQQKTEQEKQKTEQEK 227
+ TE+ K+ Q++
Sbjct: 497 LKNATEEIKRSLMQQE 512
Score = 26.6 bits (57), Expect = 1.4
Identities = 26/161 (16%), Positives = 61/161 (37%), Gaps = 18/161 (11%)
Query: 214 QKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQ 273
++ ++E + +Q+ + +K + Q +++ NNQ+ +E+ + TE+ K+ +
Sbjct: 453 RENQEELKNAKQKLNALGVKSKKIIAQHQSLNHLVKNNQVIMEKLKNATEEIKRSLMQQE 512
Query: 274 KDLVKYAE---------------QNCQENHNQFFIKKLGIKGGIAIEVEAECKTPKPAKT 318
Y+E Q+ +N+ + K + I+ A T P K
Sbjct: 513 SVKDAYSEFVFALKRLKILKAQMLELQKINNECYAKLISIENSFQ---HASITTKNPFKQ 569
Query: 319 NQTPIQPKHLPNSKQPHSQRGSKAQEFIAYLQKELEFLPYS 359
I ++ P + + Y +++ +P S
Sbjct: 570 ENIVIYHRNYPKVSNLSAMLSHNESVDVIYEDHKIKKVPKS 610
>ref|NP_223325.1| RIBONUCLEASE III [Helicobacter pylori J99]
Length = 239
Score = 28.9 bits (63), Expect = 0.29
Identities = 30/136 (22%), Positives = 55/136 (40%), Gaps = 7/136 (5%)
Query: 66 DYLKTHPNSWFNSAIGVTTITAMLMNVCFADDQSKKEVAETQKEAENARDRANKSGIELE 125
DYL+ + + +I + A + +A+ +K +N +RA K ++LE
Sbjct: 105 DYLRVSSSEEISKGREKPSILSSAFEALMAGVYLEAGLAKVRKIIQNLLNRAYKR-LDLE 163
Query: 126 QEQQKTEQEKQKTEQEK------QKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQ 179
+ Q+ Q + + QEK + E + ++ K T + K K E
Sbjct: 164 HLFMDYKTALQELTQAQFCVIPTYQLLQEKGPDHHKEFEMALYIQDKMYATAKGKSKKEA 223
Query: 180 EKQKTEQEKQKTEQEK 195
E+Q Q QK ++ K
Sbjct: 224 EQQCAYQALQKLKEAK 239
Score = 26.2 bits (56), Expect = 1.9
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 193 QEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEK 241
QEK + E + ++ K T + K K E E+Q Q QK ++ K
Sbjct: 191 QEKGPDHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQALQKLKEAK 239
>ref|NP_223219.1| putative [Helicobacter pylori J99]
Length = 321
Score = 28.9 bits (63), Expect = 0.29
Identities = 41/185 (22%), Positives = 77/185 (41%), Gaps = 31/185 (16%)
Query: 92 VCFADDQSKKEVAETQKEAENARDRANKSG-IELEQEQQKTEQEKQKTEQEKQKT----- 145
+C A + K + ++ + R + G I++ + + K + E +K
Sbjct: 51 ICKATKIASKNIHSILEKRYESLSRVHARGFIQILEHEYKIDLSAWVKEFDKVCVFKEGV 110
Query: 146 -EQEKQKTSNIETNNQ-IKVEQ----KQQKTEQEKQKTEQEK-----------------Q 182
E++KQ+TS ET + +KVE Q T K+ ++ + Q
Sbjct: 111 GEEQKQETSPEETAKKPLKVELDYSINQANTSLSKKSSKWKPFVIVLGVVVIILVVVIIQ 170
Query: 183 KTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQ 242
+ K++ EQE+ + + N+ + ++K + K E EK K EQ+KQ E K+
Sbjct: 171 NSSSLKEEREQERAIKPDTKNNSFNETNPTEEKKLEPTPKLE-EKHK-EQDKQGKEAIKE 228
Query: 243 KTSNI 247
+ I
Sbjct: 229 NPNTI 233
Score = 26.6 bits (57), Expect = 1.4
Identities = 48/232 (20%), Positives = 89/232 (37%), Gaps = 52/232 (22%)
Query: 164 EQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSN-------------------IETN 204
EQKQ+ + +E K + + Q +K+S I+ +
Sbjct: 113 EQKQETSPEETAKKPLKVELDYSINQANTSLSKKSSKWKPFVIVLGVVVIILVVVIIQNS 172
Query: 205 NQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEK-QKTSNIETNNQIKVEQEQQKTE 263
+ +K E+ EQE+ K + E TE++K + T +E ++ EQ++Q E
Sbjct: 173 SSLKEER-----EQERAIKPDTKNNSFNETNPTEEKKLEPTPKLEEKHK---EQDKQGKE 224
Query: 264 QEKQKTNN----TQKDL-VKYAEQNCQENHNQFFIKKLGIKGGIAIEVEAECKTPKPAKT 318
K+ N ++D+ V+ + + ++N Q KK P AK
Sbjct: 225 AIKENPNTIYIIPKRDIWVEVIDLDEKKNSFQKVFKK---------------SYPLEAKN 269
Query: 319 NQTPIQPKH----LPNSKQPHSQRGSKAQEFIAYLQKELEFLPYSQKAIAKQ 366
++ ++ H L N+ Q SK + F+ K L + +Q +Q
Sbjct: 270 HRLLLRFGHGHLILKNNHQEQDYNDSKTRRFLYEPNKGLTLINEAQYKALQQ 321
>ref|NP_222961.1| putative [Helicobacter pylori J99]
Length = 142
Score = 28.9 bits (63), Expect = 0.29
Identities = 27/123 (21%), Positives = 58/123 (46%), Gaps = 18/123 (14%)
Query: 122 IELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEK 181
+ LE+ ++K E ++ + +Q +++ +KQ + N ++ +T+Q K E
Sbjct: 14 LALEKIERKLESKRLELQQNEREV-LDKQAQLSAFKNPELGGMSLFLQTQQLKSALRMEI 72
Query: 182 QKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQ-----QKTEQEKQKTEQEKQKTEQEKQK 236
+ +QE + ++ +K+ +K Q+ E+ K E+EKQK ++ +K
Sbjct: 73 EYYQQEGENLTKD------------LKILEKDYLLANQELEKAKIILEKEKQKEKEILEK 120
Query: 237 TEQ 239
EQ
Sbjct: 121 KEQ 123
Score = 24.3 bits (51), Expect = 7.1
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 101 KEVAETQKEAENARDRANKSGIELEQEQQKTEQEKQKTEQ 140
K++ +K+ A K+ I LE+E+QK ++ +K EQ
Sbjct: 84 KDLKILEKDYLLANQELEKAKIILEKEKQKEKEILEKKEQ 123
>ref|NP_222832.1| PHOSPHOENOLPYRUVATE SYNTHASE [Helicobacter pylori J99]
Length = 812
Score = 28.9 bits (63), Expect = 0.29
Identities = 33/127 (25%), Positives = 59/127 (45%), Gaps = 11/127 (8%)
Query: 124 LEQEQQKT--EQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQE-----KQK 176
LEQ ++ Q KT++ + T NI+T K Q ++++ K
Sbjct: 244 LEQNKRPIIKRQLGNKTQKMVYAPRGSEHPTRNIKTTK--KEWQSFSLSDEDVLILAKYA 301
Query: 177 TEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQK 236
E EK +++ KQ + + + E+ +I + Q + +T Q QKT++E Q E+ K K
Sbjct: 302 IEIEKHYSKEAKQYRPMDIEWAKDGESG-EIFIVQARPETVQS-QKTKEENQVFEKFKFK 359
Query: 237 TEQEKQK 243
EK++
Sbjct: 360 NPNEKKE 366
>ref|NP_222782.1| putative [Helicobacter pylori J99]
Length = 117
Score = 28.9 bits (63), Expect = 0.29
Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 11/118 (9%)
Query: 76 FNSAIGVTTITAMLMNVCFADDQSKKEVAETQKEAENARDRANKSGIELEQEQQKTEQEK 135
F+ + + T L +C + + + QK A + K +LE +Q+T+ E
Sbjct: 3 FSHKVFLEGCTNELRRICDSFVEGAMQDDLGQKLKSEALENMLKIAHDLENLEQETQYEM 62
Query: 136 QKTEQ--------EKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTE 185
+K + EKQ Q++ S I+ ++ E K+ + E +++ E K K +
Sbjct: 63 RKINEQLEEAKRLEKQVDMQDRHSQSEID---RLMREAKEHEREAKRRYGEYLKDKND 117
>ref|NP_223915.1| putative [Helicobacter pylori J99]
Length = 123
Score = 28.5 bits (62), Expect = 0.38
Identities = 33/127 (25%), Positives = 59/127 (45%), Gaps = 20/127 (15%)
Query: 187 EKQKTEQEKQKTSNI---ETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQK 243
EK+ T + K ++ ET+ + +E K ++ + K E +K +E+ +EK K
Sbjct: 9 EKKNTITRRMKIAHNSLPETDRKAHMEPKWRELADIRSKMFAESKKQLKERGIQLKEKSK 68
Query: 244 TSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDLVK-YAEQNCQENHNQFFIKKLGIKGGI 302
E+ E+E++ E+E Q Q++L++ Y Q+N K GIK
Sbjct: 69 AQQQES-----FEREKELMEEEFQ----VQRELLEIYYGYPTQKN-------KPGIKYDD 112
Query: 303 AIEVEAE 309
I++E E
Sbjct: 113 TIDIEPE 119
Score = 26.2 bits (56), Expect = 1.9
Identities = 24/125 (19%), Positives = 54/125 (43%), Gaps = 21/125 (16%)
Query: 155 IETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNI------ETNNQIK 208
+ TNN +++ T + K K E + ++ ++I E+ Q+K
Sbjct: 1 MNTNNH---NNEKKNTITRRMKIAHNSLPETDRKAHMEPKWRELADIRSKMFAESKKQLK 57
Query: 209 ---VEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQ---------EKQKTSNIETNNQIKVE 256
++ K++ Q+++ E+EK+ E+E Q + ++ I+ ++ I +E
Sbjct: 58 ERGIQLKEKSKAQQQESFEREKELMEEEFQVQRELLEIYYGYPTQKNKPGIKYDDTIDIE 117
Query: 257 QEQQK 261
E +K
Sbjct: 118 PEDEK 122
Score = 23.9 bits (50), Expect = 9.3
Identities = 12/52 (23%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 101 KEVAETQ-KEAENARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQK 151
+E+A+ + K ++ + + GI+L+++ + +QE + E+E + E + Q+
Sbjct: 39 RELADIRSKMFAESKKQLKERGIQLKEKSKAQQQESFEREKELMEEEFQVQR 90
>ref|NP_223885.1| 30S RIBOSOMAL PROTEIN S6 [Helicobacter pylori J99]
Length = 142
Score = 28.1 bits (61), Expect = 0.49
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 98 QSKKEVAETQKEAENAR-DRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQ 150
+SKKEV EA +A DRANK +++ +KTE +E + TE +
Sbjct: 94 ESKKEV-----EAWHALVDRANKKPSHAKEKHEKTEHTHSHHAEEAKSTESHSE 142
>ref|NP_223641.1| putative [Helicobacter pylori J99]
Length = 268
Score = 28.1 bits (61), Expect = 0.49
Identities = 22/115 (19%), Positives = 44/115 (38%), Gaps = 7/115 (6%)
Query: 153 SNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQK 212
+ I+T NQ+ K E + + +KT+++ QK N+ + + +
Sbjct: 61 NKIDTINQV-------KPNDETKSVNENIEKTQKDLDDFNALVQKLPNLPKDFNKTLIKP 113
Query: 213 QQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQ 267
Q E EK + + +K+ I N + + ++K E EK+
Sbjct: 114 QSPFFNYNTANEDEKNRLVILASRISSQKETQPPISIKNSVSHIKSKEKRELEKE 168
>ref|NP_224039.1| putative histidine and glutamine-rich metal-binding protein
[Helicobacter pylori J99]
Length = 77
Score = 27.7 bits (60), Expect = 0.64
Identities = 18/91 (19%), Positives = 37/91 (39%), Gaps = 19/91 (20%)
Query: 139 EQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKT 198
EQ+ Q +Q++Q S ++ + + +Q+ EQ Q+
Sbjct: 5 EQQHQAQQQQQQANSQHHHHHHVHHHHYYGGEHHHHNAQQHAEQQAEQHAQQ-------- 56
Query: 199 SNIETNNQIKVEQKQQKTEQEKQKTEQEKQK 229
+Q+QQ +Q++QK +Q+ Q+
Sbjct: 57 -----------QQQQQAHQQQQQKAQQQNQQ 76
Score = 26.6 bits (57), Expect = 1.4
Identities = 14/71 (19%), Positives = 33/71 (45%), Gaps = 3/71 (4%)
Query: 185 EQEKQKTEQEKQKTSNIETNNQIKVEQK---QQKTEQEKQKTEQEKQKTEQEKQKTEQEK 241
EQ+ Q +Q++Q S ++ + + +Q EQ+ ++ Q++Q+ + +
Sbjct: 5 EQQHQAQQQQQQANSQHHHHHHVHHHHYYGGEHHHHNAQQHAEQQAEQHAQQQQQQQAHQ 64
Query: 242 QKTSNIETNNQ 252
Q+ + NQ
Sbjct: 65 QQQQKAQQQNQ 75
Score = 24.6 bits (52), Expect = 5.4
Identities = 11/36 (30%), Positives = 22/36 (60%), Gaps = 3/36 (8%)
Query: 112 NARDRANKSG---IELEQEQQKTEQEKQKTEQEKQK 144
NA+ A + + +Q+QQ +Q++QK +Q+ Q+
Sbjct: 41 NAQQHAEQQAEQHAQQQQQQQAHQQQQQKAQQQNQQ 76
Score = 24.3 bits (51), Expect = 7.1
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 128 QQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQ 160
QQ EQ+ ++ Q++Q+ + +Q+ + NQ
Sbjct: 43 QQHAEQQAEQHAQQQQQQQAHQQQQQKAQQQNQ 75
Score = 23.9 bits (50), Expect = 9.3
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Query: 217 EQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIET---NNQIKVEQEQQKTEQEKQKTNNTQ 273
EQ+ Q +Q++Q Q E N Q EQ+ ++ Q++Q+ Q
Sbjct: 5 EQQHQAQQQQQQANSQHHHHHHVHHHHYYGGEHHHHNAQQHAEQQAEQHAQQQQQQQAHQ 64
Query: 274 KDLVKYAEQNCQ 285
+ K +QN Q
Sbjct: 65 QQQQKAQQQNQQ 76
>ref|NP_223039.1| putative [Helicobacter pylori J99]
Length = 186
Score = 27.7 bits (60), Expect = 0.64
Identities = 23/101 (22%), Positives = 49/101 (47%), Gaps = 11/101 (10%)
Query: 81 GVTTITAMLMNVCFADDQSKKEVAETQKEA-ENARDRANKSGIELEQ------EQQKTEQ 133
GV I+A C+ Q + + +++ EN ++R+N+ + + E+ +++
Sbjct: 88 GVIVISA---RKCYQFSQKMFALIQRKRQIRENLKNRSNRKDAKNFEKLSNIAEEIISKK 144
Query: 134 EKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEK 174
+++ +E E K K SNI T I +Q++ K ++K
Sbjct: 145 QEESHHKEDSNDENHKDKLSNI-TEEMILKKQEELKARKDK 184
Score = 25.0 bits (53), Expect = 4.2
Identities = 20/93 (21%), Positives = 40/93 (42%), Gaps = 17/93 (18%)
Query: 128 QQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQE 187
Q+K + + + +K + +K SNI E+ ++++++ +E
Sbjct: 109 QRKRQIRENLKNRSNRKDAKNFEKLSNI----------------AEEIISKKQEESHHKE 152
Query: 188 KQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEK 220
E K K SNI T I +Q++ K ++K
Sbjct: 153 DSNDENHKDKLSNI-TEEMILKKQEELKARKDK 184
>ref|NP_224062.1| putative [Helicobacter pylori J99]
Length = 258
Score = 27.3 bits (59), Expect = 0.84
Identities = 18/70 (25%), Positives = 35/70 (49%)
Query: 100 KKEVAETQKEAENARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIETNN 159
KKE E+ ++ +S E+ Q ++ + KT QE+ T + +KT E++N
Sbjct: 47 KKEAIILVGVKESVKEVKEESVKEIHQNAEEKQSLGIKTPQEEIITPKPPKKTPKEESHN 106
Query: 160 QIKVEQKQQK 169
K+ + +Q+
Sbjct: 107 GDKLHEIKQE 116
Score = 26.6 bits (57), Expect = 1.4
Identities = 16/57 (28%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 163 VEQKQQKTEQEKQKTEQEKQ----KTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQK 215
V++ ++++ +E + +EKQ KT QE+ T + +KT E++N K+ + +Q+
Sbjct: 60 VKEVKEESVKEIHQNAEEKQSLGIKTPQEEIITPKPPKKTPKEESHNGDKLHEIKQE 116
Score = 26.6 bits (57), Expect = 1.4
Identities = 16/57 (28%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 209 VEQKQQKTEQEKQKTEQEKQ----KTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQK 261
V++ ++++ +E + +EKQ KT QE+ T + +KT E++N K+ + +Q+
Sbjct: 60 VKEVKEESVKEIHQNAEEKQSLGIKTPQEEIITPKPPKKTPKEESHNGDKLHEIKQE 116
Score = 25.0 bits (53), Expect = 4.2
Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 119 KSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTE 178
K I L ++ ++ K+++ +E + +EKQ IK Q++ T + +KT
Sbjct: 48 KEAIILVGVKESVKEVKEESVKEIHQNAEEKQSLG-------IKTPQEEIITPKPPKKTP 100
Query: 179 QEKQKTEQEKQKTEQE 194
+E+ + + +QE
Sbjct: 101 KEESHNGDKLHEIKQE 116
Score = 25.0 bits (53), Expect = 4.2
Identities = 15/67 (22%), Positives = 33/67 (48%), Gaps = 7/67 (10%)
Query: 174 KQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQE 233
K+ ++ K+++ +E + +EKQ IK Q++ T + +KT +E+ +
Sbjct: 57 KESVKEVKEESVKEIHQNAEEKQSLG-------IKTPQEEIITPKPPKKTPKEESHNGDK 109
Query: 234 KQKTEQE 240
+ +QE
Sbjct: 110 LHEIKQE 116
Score = 23.9 bits (50), Expect = 9.3
Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 149 KQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIK 208
K+ ++ + ++ Q ++ + KT QE+ T + +KT K+++ N + ++IK
Sbjct: 57 KESVKEVKEESVKEIHQNAEEKQSLGIKTPQEEIITPKPPKKT--PKEESHNGDKLHEIK 114
Query: 209 VEQK 212
E K
Sbjct: 115 QELK 118
>ref|NP_223199.1| cag island protein [Helicobacter pylori J99]
Length = 280
Score = 26.9 bits (58), Expect = 1.1
Identities = 21/94 (22%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
Query: 158 NNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIET-NNQIKVEQKQQKT 216
N Q+ E ++K + EK + ++E++ T ++ + +ET +N+ + +Q
Sbjct: 178 NKQVINEVAREKAQLEKINQYYKTLLQDKEQEYTTRKNNQREILETLSNRAGYQMRQNVI 237
Query: 217 EQEKQKTE----QEKQKTEQEKQKTEQEKQKTSN 246
E K Q K++ +EK + E+E + N
Sbjct: 238 SSEIFKNGNLNMQAKEEEVREKLQEERENEYLRN 271
Score = 23.9 bits (50), Expect = 9.3
Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 2/93 (2%)
Query: 198 TSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQ 257
T N+ + KQ E ++K + EK Q + Q+K++ NNQ ++ +
Sbjct: 165 TKNLHGYDVSGANNKQVINEVAREKAQLEK--INQYYKTLLQDKEQEYTTRKNNQREILE 222
Query: 258 EQQKTEQEKQKTNNTQKDLVKYAEQNCQENHNQ 290
+ + N ++ K N Q +
Sbjct: 223 TLSNRAGYQMRQNVISSEIFKNGNLNMQAKEEE 255
>ref|NP_222780.1| putative [Helicobacter pylori J99]
Length = 500
Score = 26.9 bits (58), Expect = 1.1
Identities = 23/143 (16%), Positives = 57/143 (39%), Gaps = 13/143 (9%)
Query: 139 EQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKT 198
EQE +K+ ++ + + N ++++ EQE +K+ ++ +
Sbjct: 246 EQEFEKSLEDWMGAYSYDENPNDELDRMAISKEQELEKSLEDLMPS-------------V 292
Query: 199 SNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQE 258
+ + N+ K + + K+ E +K ++ + + N+ET + E
Sbjct: 293 LGVPSYNESLTLAKNRCVKNFKEALEGFTEKIKESPNDSNAINEAFDNLETELERATENL 352
Query: 259 QQKTEQEKQKTNNTQKDLVKYAE 281
QK + ++ N + ++Y E
Sbjct: 353 SQKIDPVLERNENYTQKALEYRE 375
>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN
[Helicobacter pylori J99]
Length = 1167
Score = 26.6 bits (57), Expect = 1.4
Identities = 36/156 (23%), Positives = 59/156 (37%), Gaps = 33/156 (21%)
Query: 107 QKEAENARDRANKSGIE-LEQEQQKTEQEKQKTEQEKQ--------KTEQEKQKTSNIET 157
QK + DR N+ E + Q +++ + K +K K+ K + I+T
Sbjct: 43 QKPIVDKNDRDNRQAFEKISQLREEFANKAIKNPTKKNQYFSSFISKSNDLIDKDNLIDT 102
Query: 158 NNQIKVEQK-------------QQKTEQEKQKTEQEKQKTEQ--------EKQKTE---Q 193
+ IK QK + + K T++ + E +K+K E
Sbjct: 103 GSSIKSFQKFGTQRYQIFMNWVSHQNDPSKINTQKIRGFMENIIQPPISDDKEKAEFLRS 162
Query: 194 EKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQK 229
KQ + I NQI+ +QK E K QE +K
Sbjct: 163 AKQAFAGIIIGNQIRSDQKFMGVFDESLKERQEAEK 198
Score = 23.9 bits (50), Expect = 9.3
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 249 TNNQIKVEQEQQKTEQEKQKTNNTQKDLVKYAE 281
T N +V+Q Q+ E+ +K +KD+ K E
Sbjct: 605 TGNYDEVKQAQKDLEKSLKKRERLEKDVAKNLE 637
>ref|NP_223108.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 455
Score = 26.6 bits (57), Expect = 1.4
Identities = 34/153 (22%), Positives = 64/153 (41%), Gaps = 9/153 (5%)
Query: 123 ELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQ 182
E E K Q + KT++ ++KT +I V ++ E+ K+ +
Sbjct: 9 ETAAEALKIAQSHHGVDTLVFKTQEIRKKTLTSSGLYEIVVAVEE---EENKKAPLIPES 65
Query: 183 KTEQEKQKTEQEKQKTSNIETNNQIK-VEQKQQKTEQEKQKTEQEK----QKTEQEKQKT 237
++E + + Q +S +E ++ V Q+ K KT EK + T E K
Sbjct: 66 LYDEELNEEDVVMQLSSTVEEMRKLAGVSSNQRNYTFSKNKTLLEKDAPLEDTPLEANKQ 125
Query: 238 EQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTN 270
+ Q + E N++ + E+ + K E+E + N
Sbjct: 126 DALLQALKD-EANHKKEREKREVKQEEEIKDIN 157
>ref|NP_223994.1| putative [Helicobacter pylori J99]
Length = 168
Score = 26.2 bits (56), Expect = 1.9
Identities = 24/132 (18%), Positives = 49/132 (36%), Gaps = 3/132 (2%)
Query: 100 KKEVAETQKEAENARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIETNN 159
+KE + E D + + + ++ E + EK E KT+ N
Sbjct: 30 EKEFYHKMRRLEKTLDESYQENYLYSKRLRELEGRLEGLSLEKSAKEDSSLKTTLSHLYN 89
Query: 160 QIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQE 219
Q++ QK E++ +EK T + K K + + +K+ Q+ +
Sbjct: 90 QLQEIQKSMDKERDYL---EEKIITLENKFKDMGHYAASDEVNEKQVLKMYQEGYSVDSI 146
Query: 220 KQKTEQEKQKTE 231
++ + K + E
Sbjct: 147 SKEFKVSKGEVE 158
>ref|NP_223639.1| putative [Helicobacter pylori J99]
Length = 328
Score = 26.2 bits (56), Expect = 1.9
Identities = 12/43 (27%), Positives = 27/43 (61%)
Query: 185 EQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEK 227
E+ K+K + +K + N+ ++E++ + +E+QKT++EK
Sbjct: 17 ERLKEKYGDDWEKHVKAKAINEEELEEQVKAKAKEQQKTQREK 59
Score = 26.2 bits (56), Expect = 1.9
Identities = 12/43 (27%), Positives = 27/43 (61%)
Query: 139 EQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEK 181
E+ K+K + +K + N+ ++E++ + +E+QKT++EK
Sbjct: 17 ERLKEKYGDDWEKHVKAKAINEEELEEQVKAKAKEQQKTQREK 59
Score = 23.9 bits (50), Expect = 9.3
Identities = 18/65 (27%), Positives = 29/65 (43%), Gaps = 12/65 (18%)
Query: 78 SAIGVTTITAMLMNVCFADDQSKKEVAETQKEAENARDRANKSGIELEQEQQKTEQEKQK 137
SA G+ I + + DD K A+ E E LE++ + +E+QK
Sbjct: 7 SAWGLPKILEERLKEKYGDDWEKHVKAKAINEEE------------LEEQVKAKAKEQQK 54
Query: 138 TEQEK 142
T++EK
Sbjct: 55 TQREK 59
>ref|NP_223386.1| putative [Helicobacter pylori J99]
Length = 569
Score = 26.2 bits (56), Expect = 1.9
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 126 QEQQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQ-------IKVEQKQQKTEQEKQKTE 178
Q+QQ+ E+ K++ E +QE N ET + +++E+ Q E+ +KT+
Sbjct: 482 QKQQEFEKTKREMESHFNNQKQEILALINDETRFKQTCFPMALELEETIQACEESVKKTQ 541
Query: 179 QEKQKTEQEKQKTE 192
+ Q E+ Q E
Sbjct: 542 ECAQGLEKWIQTGE 555
Score = 25.4 bits (54), Expect = 3.2
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 172 QEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTE 231
Q++Q+ E+ K++ E +QE N ET + + E+ Q E+ +KT+
Sbjct: 482 QKQQEFEKTKREMESHFNNQKQEILALINDETRFKQTCFPMALELEETIQACEESVKKTQ 541
Query: 232 QEKQKTEQEKQKTSN-IETNNQIKVEQE 258
+ Q E+ Q + I+ + I VE E
Sbjct: 542 ECAQGLEKWIQTGEDFIKGEDIIDVEPE 569
>ref|NP_223137.1| putative [Helicobacter pylori J99]
Length = 115
Score = 26.2 bits (56), Expect = 1.9
Identities = 13/51 (25%), Positives = 26/51 (50%)
Query: 171 EQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQ 221
+ EK++ E+ K E++ Q+KQK + K + +QK + ++Q
Sbjct: 60 DPEKREEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQKQDLKEQ 110
Score = 26.2 bits (56), Expect = 1.9
Identities = 13/51 (25%), Positives = 26/51 (50%)
Query: 217 EQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQ 267
+ EK++ E+ K E++ Q+KQK + K + +QK + ++Q
Sbjct: 60 DPEKREEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQKQDLKEQ 110
Score = 25.8 bits (55), Expect = 2.4
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 126 QEQQKTEQ--EKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQ 175
Q+ +K E+ E+ K E++ Q+KQK + K + +QK + ++Q
Sbjct: 59 QDPEKREEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQKQDLKEQ 110
>ref|NP_223661.1| putative [Helicobacter pylori J99]
Length = 255
Score = 25.8 bits (55), Expect = 2.4
Identities = 37/181 (20%), Positives = 64/181 (34%), Gaps = 16/181 (8%)
Query: 121 GIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQE 180
GI E +K + K++ E + EKQ + NN+I + K+ +++
Sbjct: 75 GIFNENIAEKLKIPKKEKEILQPLNANEKQVLNTALENNEIDARTFKPWDLGSKEASKEN 134
Query: 181 KQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQE 240
+E+ Q K S+ N+ + Q ++ K+ KQ +
Sbjct: 135 ASMSEE----LTQNNSKLSHFNENSIAQNSVGQNNVKEPNTKSNNSKQ------NHSLSN 184
Query: 241 KQKTSNIETNNQI--KVEQEQQKTEQEKQKTNNTQ----KDLVKYAEQNCQENHNQFFIK 294
TSN + N + E + K +TQ K K A N E + + K
Sbjct: 185 SDLTSNTDYNKLVADMFENQMDANGNYIGKKFSTQAYDNKTPYKVATGNASEYSSYLYSK 244
Query: 295 K 295
K
Sbjct: 245 K 245
>ref|NP_223477.1| putative [Helicobacter pylori J99]
Length = 153
Score = 25.8 bits (55), Expect = 2.4
Identities = 14/52 (26%), Positives = 25/52 (47%)
Query: 342 AQEFIAYLQKELEFLPYSQKAIAKQVNFYKPSSIAYLELDPRDFKVTEEWQK 393
A E + Y+ K+ I KQ FY+PS++ +D ++ E ++K
Sbjct: 88 ALEILGYVPKDSLEKANFYAPIKKQAQFYRPSALGLFHNPIKDARLHECFEK 139
>ref|NP_223965.1| putative [Helicobacter pylori J99]
Length = 412
Score = 25.4 bits (54), Expect = 3.2
Identities = 63/260 (24%), Positives = 104/260 (39%), Gaps = 39/260 (15%)
Query: 214 QKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQ 273
QK + +K Q K EKQK E +KT N + E K +QE + N
Sbjct: 103 QKVDLNGKKLTQSKM-INLEKQKKILELKKTKQQLVINLMINGIENYKNQQEIELLNTAI 161
Query: 274 KDLVKYAEQ-NCQENHNQFFIKKLGI-KGGIAIE---VEAECKTPKPA------KTNQ-T 321
K+L Q N + + I KL I K + IE +E + + K N+
Sbjct: 162 KNLENTLYQANHSSSPDLIAIAKLEILKSLLEIEKNDLEVALSSSHYSMGELTFKENEIL 221
Query: 322 PIQPKHLP--NSKQPHSQRGSKAQEFIAYL--QKELEFLPYSQKAIAKQVN----FYKPS 373
I PK+ N ++ H+ + IA L +K + + ++K+ + +N +Y S
Sbjct: 222 SIAPKNFEFNNEQELHNISATNYDIAIARLDEEKAQKDITLAKKSFLEDINVTGVYYFRS 281
Query: 374 SIAY------------LELDPRDFKVTEEWQKENLKIRSKAQAKMLEMRDLKPDPQAHLP 421
Y L L + K+ E+ +KE+L +S+ + + R L L
Sbjct: 282 KQYYNYDMFSVALSIPLPLYGKQAKLVEQKKKESLAFKSEVENAKNKTRHLA------LK 335
Query: 422 TSQSLLFVQKIFADVNKEIE 441
+ L +QK +NK I+
Sbjct: 336 LLKKLETLQKNLESINKIIK 355
Score = 23.9 bits (50), Expect = 9.3
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 97 DQSKKEVAETQKEAENARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNI 155
+Q KKE + E ENA+++ ++L K + QK + K ++ +K + I
Sbjct: 309 EQKKKESLAFKSEVENAKNKTRHLALKL----LKKLETLQKNLESINKIIKQNEKIAQI 363
Score = 23.9 bits (50), Expect = 9.3
Identities = 13/57 (22%), Positives = 29/57 (50%)
Query: 172 QEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQ 228
++ + EQ+K+++ K + E K KT ++ K+E Q+ E + +Q ++
Sbjct: 303 KQAKLVEQKKKESLAFKSEVENAKNKTRHLALKLLKKLETLQKNLESINKIIKQNEK 359
Score = 23.9 bits (50), Expect = 9.3
Identities = 15/63 (23%), Positives = 29/63 (45%)
Query: 218 QEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDLV 277
++ + EQ+K+++ K + E K KT ++ K+E Q+ E + +K
Sbjct: 303 KQAKLVEQKKKESLAFKSEVENAKNKTRHLALKLLKKLETLQKNLESINKIIKQNEKIAQ 362
Query: 278 KYA 280
YA
Sbjct: 363 IYA 365
Score = 23.9 bits (50), Expect = 9.3
Identities = 13/57 (22%), Positives = 29/57 (50%)
Query: 126 QEQQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQ 182
++ + EQ+K+++ K + E K KT ++ K+E Q+ E + +Q ++
Sbjct: 303 KQAKLVEQKKKESLAFKSEVENAKNKTRHLALKLLKKLETLQKNLESINKIIKQNEK 359
>ref|NP_223490.1| putative [Helicobacter pylori J99]
Length = 296
Score = 25.4 bits (54), Expect = 3.2
Identities = 35/184 (19%), Positives = 66/184 (35%), Gaps = 8/184 (4%)
Query: 171 EQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQI--KVEQKQ---QKTEQEKQKTEQ 225
+ +K+ EQE +++ + + I N + +E++ Q T+ E
Sbjct: 27 KMQKKAQEQENDGSKRPSYVDSDYEVFSETIFLQNMVYQPIEERNAFFQLTKDEDNSFNP 86
Query: 226 EKQKTEQEKQKTEQEKQKTS--NIETNNQIKVEQEQQKTEQEKQKTNNTQKDLVKYAEQN 283
E + EK S N NN+ Q+ K K L++Y++Q+
Sbjct: 87 ENSVILLNEPSDNSEKNLLSYPNDPNNNEDNANNSQKNPFLYKPKRKTKNPKLIEYSQQD 146
Query: 284 CQENHN-QFFIKKLGIKGGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPHSQRGSKA 342
N + K G + I I+ +A + K IQ ++K +Q K
Sbjct: 147 FYPLKNGDIIMSKEGDQWLIEIQSKALKRFLKDQNDKDRQIQTFTFNDTKTQIAQIKGKI 206
Query: 343 QEFI 346
++
Sbjct: 207 SSYV 210
>ref|NP_223180.1| putative [Helicobacter pylori J99]
Length = 706
Score = 25.4 bits (54), Expect = 3.2
Identities = 24/132 (18%), Positives = 56/132 (42%), Gaps = 12/132 (9%)
Query: 167 QQKTEQEKQKTEQEKQKTEQEKQ-----KTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQ 221
Q+K + EK + + + K + E EK+ + ++ +I + E+
Sbjct: 497 QEKRDMEKGFKQSSLKLNKNLKDLEPFGEKEIEKRASDLVDWALKIWTYPILEAETLEEY 556
Query: 222 KTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDLVKYAE 281
K ++EK++ +++K+K E + +K + + K ++ +K +K +
Sbjct: 557 KPKKEKKEKKEKKEKEEYKLKKEKKVYDLSSYKFSPHSRELFDILRKE-------IKTLD 609
Query: 282 QNCQENHNQFFI 293
+ EN N +I
Sbjct: 610 ERVTENFNSKYI 621
Score = 24.6 bits (52), Expect = 5.4
Identities = 19/87 (21%), Positives = 47/87 (53%), Gaps = 12/87 (13%)
Query: 169 KTEQEKQKTEQEKQKTEQEKQKT--------EQEKQKTSNIETNNQIKVEQ----KQQKT 216
K+ QEK+ E+ +++ + K E+E +K ++ + +K+ + +
Sbjct: 494 KSFQEKRDMEKGFKQSSLKLNKNLKDLEPFGEKEIEKRASDLVDWALKIWTYPILEAETL 553
Query: 217 EQEKQKTEQEKQKTEQEKQKTEQEKQK 243
E+ K K E++++K ++EK++ + +K+K
Sbjct: 554 EEYKPKKEKKEKKEKKEKEEYKLKKEK 580
Score = 24.3 bits (51), Expect = 7.1
Identities = 9/28 (32%), Positives = 22/28 (78%)
Query: 124 LEQEQQKTEQEKQKTEQEKQKTEQEKQK 151
LE+ + K E++++K ++EK++ + +K+K
Sbjct: 553 LEEYKPKKEKKEKKEKKEKEEYKLKKEK 580
Score = 23.9 bits (50), Expect = 9.3
Identities = 9/34 (26%), Positives = 24/34 (70%)
Query: 163 VEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQ 196
+E + + + K++ +++K+K E+E+ K ++EK+
Sbjct: 548 LEAETLEEYKPKKEKKEKKEKKEKEEYKLKKEKK 581
>ref|NP_223375.1| putative [Helicobacter pylori J99]
Length = 140
Score = 25.0 bits (53), Expect = 4.2
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 100 KKEVAETQK--EAENARD-RANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIE 156
+ EV++ K AE+A+ RAN S I + + +E++ +K +E +K +EK K + E
Sbjct: 47 RMEVSKRLKALSAEDAKKFRANFSRIARKNLSKMSEEDFKKMREEVRKELEEKTKGLSAE 106
>ref|NP_222851.1| A/G-SPECIFIC ADENINE GLYCOSYLASE [Helicobacter pylori J99]
Length = 328
Score = 25.0 bits (53), Expect = 4.2
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 181 KQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQK 215
++ T ++KQ+ QE++ + NNQI +E+ +QK
Sbjct: 212 ERHTLKKKQEIIQEERYLGVVIQNNQIALEKIEQK 246
Score = 25.0 bits (53), Expect = 4.2
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 227 KQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQK 261
++ T ++KQ+ QE++ + NNQI +E+ +QK
Sbjct: 212 ERHTLKKKQEIIQEERYLGVVIQNNQIALEKIEQK 246
Score = 25.0 bits (53), Expect = 4.2
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 135 KQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQK 169
++ T ++KQ+ QE++ + NNQI +E+ +QK
Sbjct: 212 ERHTLKKKQEIIQEERYLGVVIQNNQIALEKIEQK 246
>ref|NP_224180.1| putative [Helicobacter pylori J99]
Length = 176
Score = 24.6 bits (52), Expect = 5.4
Identities = 26/114 (22%), Positives = 51/114 (43%), Gaps = 17/114 (14%)
Query: 156 ETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQK 215
+++NQ K + Q+ +Q ++ T+QE + ++E NQIK+ +
Sbjct: 63 DSDNQTKETKIQEIKKQLQENTKQEHRLNDEE----------------FNQIKIFLLPEN 106
Query: 216 TEQEKQKTEQEKQK-TEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQK 268
E + E + E+ +++E + TS + N + E +Q K Q +QK
Sbjct: 107 DETKHHPNYCELEPLLEKMAKESENKAFYTSFRQHYNTLFNEVKQIKPIQSEQK 160
>ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobacter pylori J99]
Length = 946
Score = 24.6 bits (52), Expect = 5.4
Identities = 10/40 (25%), Positives = 23/40 (57%)
Query: 173 EKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQK 212
+K+ E EK+K++ ++ E++ ++ NN K+ Q+
Sbjct: 64 QKENLESEKEKSQNILKELEEKYHLDPSLVRNNAQKIYQR 103
Score = 23.9 bits (50), Expect = 9.3
Identities = 10/39 (25%), Positives = 22/39 (55%)
Query: 219 EKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQ 257
+K+ E EK+K++ ++ E++ ++ NN K+ Q
Sbjct: 64 QKENLESEKEKSQNILKELEEKYHLDPSLVRNNAQKIYQ 102
>ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter pylori J99]
Length = 831
Score = 24.6 bits (52), Expect = 5.4
Identities = 8/31 (25%), Positives = 18/31 (57%)
Query: 265 EKQKTNNTQKDLVKYAEQNCQENHNQFFIKK 295
E+ KT QK++ Q ++ + ++F+K+
Sbjct: 200 EETKTQKLQKEIKSKVHQKMEQTNKEYFLKE 230
>ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 872
Score = 24.6 bits (52), Expect = 5.4
Identities = 20/56 (35%), Positives = 28/56 (49%), Gaps = 8/56 (14%)
Query: 100 KKEVAETQKEA-------ENARDRANKSGIELEQEQQKTEQEKQ-KTEQEKQKTEQ 147
KK++ + +KE EN A KS +E +E KT EK+ K +QE EQ
Sbjct: 816 KKQLEKLEKEKLKLNLHNENFVKNAPKSVLEKARESLKTLLEKEGKIQQELDLLEQ 871
>ref|NP_223387.1| putative [Helicobacter pylori J99]
Length = 371
Score = 24.6 bits (52), Expect = 5.4
Identities = 22/90 (24%), Positives = 39/90 (42%)
Query: 97 DQSKKEVAETQKEAENARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIE 156
D KE E Q+EA DR+ I ++ ++ + + K+ E+ ++ N E
Sbjct: 103 DPGIKETQEHQQEARFNLDRSTDKFISDLEKSAFSKINQFEFNFRKEMHERIERGIGNNE 162
Query: 157 TNNQIKVEQKQQKTEQEKQKTEQEKQKTEQ 186
E KQ+KT+ + + K+ EQ
Sbjct: 163 CKEIFGNELKQRKTKLIEDIERRFKECEEQ 192
>ref|NP_224152.1| DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N) [Helicobacter pylori
J99]
Length = 522
Score = 24.3 bits (51), Expect = 7.1
Identities = 10/53 (18%), Positives = 31/53 (57%)
Query: 97 DQSKKEVAETQKEAENARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEK 149
++ ++ + + ++ ++ +R N ++LE+ K ++ ++ EQ+K + +EK
Sbjct: 171 ERERRSLEDKKRFQKDLEERLNFEKMKLERLDLKEDEYERLLEQKKLLSSKEK 223
>ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT [Helicobacter pylori J99]
Length = 2890
Score = 24.3 bits (51), Expect = 7.1
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 117 ANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEK 149
A K+GI + E T ++KQK EK K E +K
Sbjct: 2008 ATKAGISISMEDIITPKDKQKM-VEKAKVEVKK 2039
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 23.9 bits (50), Expect = 9.3
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 351 KELEFLPYSQKAIAKQVNFYKPSSIAYLELDPRD 384
K+ F K++ +N++ PS L+L P++
Sbjct: 732 KKYNFFALDDKSLLDGLNYFIPSLFGTLKLSPKE 765
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.304 0.121 0.315
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 478,679
Number of Sequences: 1491
Number of extensions: 24164
Number of successful extensions: 1234
Number of sequences better than 10.0: 93
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 88
Number of HSP's gapped (non-prelim): 385
length of query: 461
length of database: 494,079
effective HSP length: 81
effective length of query: 380
effective length of database: 373,308
effective search space: 141857040
effective search space used: 141857040
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 50 (23.9 bits)