BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645801|ref|NP_207978.1| hypothetical protein
[Helicobacter pylori 26695]
(385 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222831.1| putative [Helicobacter pylori J99] 589 e-170
ref|NP_223830.1| putative [Helicobacter pylori J99] 418 e-118
ref|NP_223025.1| putative [Helicobacter pylori J99] 49 3e-07
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 42 2e-05
ref|NP_223176.1| putative [Helicobacter pylori J99] 37 7e-04
ref|NP_222772.1| putative [Helicobacter pylori J99] 37 9e-04
ref|NP_223773.1| putative [Helicobacter pylori J99] 36 0.001
ref|NP_223415.1| putative [Helicobacter pylori J99] 36 0.001
ref|NP_223788.1| putative [Helicobacter pylori J99] 36 0.002
ref|NP_223645.1| putative [Helicobacter pylori J99] 35 0.002
ref|NP_223574.1| putative vacuolating cytotoxin (VacA) para... 33 0.016
ref|NP_224062.1| putative [Helicobacter pylori J99] 32 0.028
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 32 0.028
ref|NP_223664.1| putative [Helicobacter pylori J99] 32 0.036
ref|NP_223515.1| putative [Helicobacter pylori J99] 32 0.036
ref|NP_223889.1| putative [Helicobacter pylori J99] 31 0.047
ref|NP_223159.1| putative [Helicobacter pylori J99] 31 0.047
ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEI... 30 0.080
ref|NP_223534.1| putative [Helicobacter pylori J99] 30 0.080
ref|NP_223206.1| cag island protein [Helicobacter pylori J99] 30 0.080
ref|NP_223787.1| putative [Helicobacter pylori J99] 30 0.10
ref|NP_223617.1| putative [Helicobacter pylori J99] 30 0.10
ref|NP_223610.1| putative [Helicobacter pylori J99] 30 0.10
ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99] 30 0.10
ref|NP_223322.1| putative [Helicobacter pylori J99] 30 0.14
ref|NP_223625.1| putative [Helicobacter pylori J99] 29 0.23
ref|NP_223158.1| putative [Helicobacter pylori J99] 29 0.23
ref|NP_223761.1| putative [Helicobacter pylori J99] 28 0.31
ref|NP_223444.1| putative TYPE I RESTRICTION ENZYME (SPECIF... 28 0.31
ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter py... 28 0.40
ref|NP_223706.1| histidine kinase [Helicobacter pylori J99] 28 0.40
ref|NP_223477.1| putative [Helicobacter pylori J99] 28 0.40
ref|NP_222774.1| putative [Helicobacter pylori J99] 28 0.40
ref|NP_223659.1| putative [Helicobacter pylori J99] 27 0.68
ref|NP_223641.1| putative [Helicobacter pylori J99] 27 0.68
ref|NP_223272.1| putative efflux transporter [Helicobacter ... 27 0.89
ref|NP_222912.1| putative [Helicobacter pylori J99] 27 0.89
ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori... 27 1.2
ref|NP_223561.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 27 1.2
ref|NP_223044.1| FLAGELLAR M-RING PROTEIN [Helicobacter pyl... 27 1.2
ref|NP_224041.1| putative [Helicobacter pylori J99] 26 1.5
ref|NP_223219.1| putative [Helicobacter pylori J99] 26 1.5
ref|NP_223195.1| cag island protein [Helicobacter pylori J99] 26 1.5
ref|NP_222840.1| putative [Helicobacter pylori J99] 26 1.5
ref|NP_222874.1| putative [Helicobacter pylori J99] 26 2.0
ref|NP_224048.1| putative [Helicobacter pylori J99] 25 2.6
ref|NP_224039.1| putative histidine and glutamine-rich meta... 25 2.6
ref|NP_223642.1| putative [Helicobacter pylori J99] 25 2.6
ref|NP_224153.1| putative [Helicobacter pylori J99] 25 3.4
ref|NP_224083.1| putative TYPE II DNA MODIFICATION ENZYME (... 25 3.4
ref|NP_223536.1| CYSTEINYL-TRNA SYNTHETASE [Helicobacter py... 25 3.4
ref|NP_224125.1| N-UTILIZATION SUBSTANCE PROTEIN A [Helicob... 25 4.4
ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATE... 25 4.4
ref|NP_223108.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 25 4.4
ref|NP_222954.1| putative [Helicobacter pylori J99] 25 4.4
ref|NP_223721.1| putative [Helicobacter pylori J99] 24 5.8
ref|NP_223520.1| putative [Helicobacter pylori J99] 24 7.5
ref|NP_222832.1| PHOSPHOENOLPYRUVATE SYNTHASE [Helicobacter... 24 7.5
ref|NP_223759.1| putative [Helicobacter pylori J99] 23 9.8
ref|NP_223684.1| METHIONYL-TRNA SYNTHETASE [Helicobacter py... 23 9.8
ref|NP_223569.1| putative IRON-REGULATED OUTER MEMBRANE PRO... 23 9.8
>ref|NP_222831.1| putative [Helicobacter pylori J99]
Length = 412
Score = 589 bits (1518), Expect = e-170
Identities = 320/416 (76%), Positives = 344/416 (81%), Gaps = 35/416 (8%)
Query: 1 MESVKTGKTNKVGKNTEMANTKANKEAHFKQASTITNIIRSIRGIFTKIAKKVRGLVKKH 60
MESVKT KTNKVGKNTE ANT+A+KE HFKQAS ITN +RSI GIFTKIAKKVR LVKKH
Sbjct: 1 MESVKTVKTNKVGKNTETANTEASKETHFKQASAITNTLRSIGGIFTKIAKKVRELVKKH 60
Query: 61 PKKSSAALVVLTHIACKKAKELDDKVQDKSKQAEKENQINWWKYSGLTIATSLLLAACST 120
PKKSS ALVVLTHIACK+AKELDDKVQDKSKQAEKENQINWWKYSGLTIA SLLLAACST
Sbjct: 61 PKKSSVALVVLTHIACKRAKELDDKVQDKSKQAEKENQINWWKYSGLTIAASLLLAACST 120
Query: 121 GDVSEQIELEQEK--------------QKT--SNIETN-NQIKVEQEKQKT--SNIE-TN 160
GD+ +QIELEQEK QKT +TN ++I++EQE+QKT S IE N
Sbjct: 121 GDIDKQIELEQEKKEANKSGIKLEQERQKTEQERQKTNKSEIELEQERQKTNKSGIELAN 180
Query: 161 NQIKVEQEQQKTEQERQKTEQERQKTEQEKQKTIKT-------QKDFIKYVEQNCQENHN 213
+QIK EQE+QKTEQE+QK + + EQ+KQKTI T QKDFIK EQNCQE H
Sbjct: 181 SQIKAEQERQKTEQEKQKANKSEIELEQQKQKTINTQRDLIKEQKDFIKETEQNCQEKHG 240
Query: 214 QFFIEKG----GIKAGIGIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPRSQRGSKAQEL 269
Q FI+K GI GI IE+EAECKTPKPAKTNQTPIQPKHLPNSKQPRSQRGSKAQEL
Sbjct: 241 QLFIKKARIKTGITTGIAIEIEAECKTPKPAKTNQTPIQPKHLPNSKQPRSQRGSKAQEL 300
Query: 270 IAYLQKELESLPYSQKAIAKQVDFYRPSSIAYLELDPRDFNVTEEWQKENLKIRSKAQAK 329
IAYLQKELESLPYSQKAIAKQVDFY+PSSIAYLELDPRDF VTEEWQKENLKIRSKAQAK
Sbjct: 301 IAYLQKELESLPYSQKAIAKQVDFYKPSSIAYLELDPRDFKVTEEWQKENLKIRSKAQAK 360
Query: 330 MLEMRSLKPDSQAHLSTSQSLLFVQKIFADVNKEIKVVANTEKKAEKAGYGYSKRM 385
MLEMR + QAHL TSQSLLFVQKIFAD+NKEI+ VANTEKK EKAGYGYSKRM
Sbjct: 361 MLEMR----NPQAHLPTSQSLLFVQKIFADINKEIEAVANTEKKTEKAGYGYSKRM 412
>ref|NP_223830.1| putative [Helicobacter pylori J99]
Length = 383
Score = 418 bits (1074), Expect = e-118
Identities = 241/388 (62%), Positives = 268/388 (68%), Gaps = 58/388 (14%)
Query: 30 KQASTITNIIRSIRGIFTKIAKKVRGLVKKHPKKSSAALVVLTHIACKKAKELDDKVQDK 89
K+ N+ SI GI + ++ +KK KKS C K DD +
Sbjct: 22 KEKKVFKNVGISIMGI--AFWEAIKDSIKKQIKKSDWI--------CGNVKTADDYL--- 68
Query: 90 SKQAEKENQINWWKYS-GLTIATSLLLAACSTGDVSEQ--------------------IE 128
K + +W+ + G+T T++L+ C D S++ IE
Sbjct: 69 -----KTHPNSWFNSAIGVTAITAMLMNVCFADDQSKKEVAQAQKEAENARDRANKSGIE 123
Query: 129 LEQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTEQERQKT--------- 179
LEQE+QKT + K EQEKQKT + K EQE+QKTEQE+QKT
Sbjct: 124 LEQEEQKTEQ----EKQKTEQEKQKTEQ----EKQKTEQEKQKTEQEKQKTSNIETNNQI 175
Query: 180 --EQERQKTEQEKQKTIKTQKDFIKYVEQNCQENHNQFFIEKGGIKAGIGIEVEAECKTP 237
EQE+QKTEQEKQKT TQKD + EQNCQENHNQFFI+K GIKAGI IE+EAECKTP
Sbjct: 176 KVEQEQQKTEQEKQKTNNTQKDLVNKAEQNCQENHNQFFIKKLGIKAGIAIEIEAECKTP 235
Query: 238 KPAKTNQTPIQPKHLPNSKQPRSQRGSKAQELIAYLQKELESLPYSQKAIAKQVDFYRPS 297
KP KTNQTPIQPKHLPNSKQP SQRGSKAQELIAYLQKELESLPYSQKAIAKQVDFYRPS
Sbjct: 236 KPTKTNQTPIQPKHLPNSKQPHSQRGSKAQELIAYLQKELESLPYSQKAIAKQVDFYRPS 295
Query: 298 SIAYLELDPRDFNVTEEWQKENLKIRSKAQAKMLEMRSLKPDSQAHLSTSQSLLFVQKIF 357
SIAYLELDPRDFN TEEWQKENLKIRSKAQAKMLEMRSLKPD QAHLSTSQSLL VQKIF
Sbjct: 296 SIAYLELDPRDFNATEEWQKENLKIRSKAQAKMLEMRSLKPDPQAHLSTSQSLLLVQKIF 355
Query: 358 ADVNKEIKVVANTEKKAEKAGYGYSKRM 385
ADV+KEIKVVANTEKK EKAGYGYSKRM
Sbjct: 356 ADVSKEIKVVANTEKKVEKAGYGYSKRM 383
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 48.5 bits (114), Expect = 3e-07
Identities = 46/177 (25%), Positives = 83/177 (45%), Gaps = 15/177 (8%)
Query: 77 KKAKELDDKVQDKSKQAEKENQINWWKYSGLTIATSLLLAACSTGDVSEQIELEQEKQKT 136
++ KE+ ++V++K KQ EN + K S+ +VS+++E QE+ +T
Sbjct: 184 EEVKEMQEEVKEKQKQEVAENPQDEEKPKDDETQGSV--EPPKDEEVSKELET-QEELET 240
Query: 137 SNIETNNQIKVEQEKQ--------KTSNIETNNQIKVEQEQQKTEQERQKTEQERQKTEQ 188
ET Q +++E Q KT + + +++ QE K QE +QE +K Q
Sbjct: 241 PKEETQEQEPIKEETQEIKEEKQEKTQDSPSAQELEAMQELVKEIQENSN-DQENKKETQ 299
Query: 189 EKQKTIKTQKDFIKYVEQNCQENHNQFFIEKGGIKAGIGIEVEAECKTPKPAKTNQT 245
E Q+ +T +D + +E Q EK ++ G+E E +TP+ + +T
Sbjct: 300 ETQENTETPQDIETQELEIPKEEETQEVAEKTQVQ---GLEKEEIAETPQEKEIQET 353
Score = 45.8 bits (107), Expect = 2e-06
Identities = 30/160 (18%), Positives = 75/160 (46%), Gaps = 16/160 (10%)
Query: 125 EQIELEQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVE----QEQQKTEQERQKTE 180
E E Q+++K + ET ++ ++++ + +ET +++ QEQ+ ++E Q+ +
Sbjct: 200 EVAENPQDEEKPKDDETQGSVEPPKDEEVSKELETQEELETPKEETQEQEPIKEETQEIK 259
Query: 181 QERQKTEQEKQKT--IKTQKDFIKYVEQNCQENHNQFFIEKGGIKAGIGIEVEAECKTPK 238
+E+Q+ Q+ ++ ++ +K +++N + N+ + E + +TP+
Sbjct: 260 EEKQEKTQDSPSAQELEAMQELVKEIQENSNDQENKKETQ----------ETQENTETPQ 309
Query: 239 PAKTNQTPIQPKHLPNSKQPRSQRGSKAQELIAYLQKELE 278
+T + I + ++Q +E IA +E E
Sbjct: 310 DIETQELEIPKEEETQEVAEKTQVQGLEKEEIAETPQEKE 349
Score = 45.1 bits (105), Expect = 3e-06
Identities = 50/222 (22%), Positives = 102/222 (45%), Gaps = 19/222 (8%)
Query: 125 EQIELEQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTEQERQKTEQERQ 184
+++E + + + E NN E++ T N E + E+ Q++ ++E K QE
Sbjct: 139 DELENLGDLEALAKEEPNN----EEQLLPTLN-EQEGETPKEEAQEEVKKEEVKEMQEEV 193
Query: 185 KTEQEKQKTIKTQKDFIKYVEQNCQENHNQFFIE-KGGIKAGIGIEVEAECKTPKPAKTN 243
K E++KQ+ + +D E+ +++ Q +E + +E + E +TPK
Sbjct: 194 K-EKQKQEVAENPQD-----EEKPKDDETQGSVEPPKDEEVSKELETQEELETPKEETQE 247
Query: 244 QTPI--QPKHLPNSKQPRSQRGSKAQELIAY--LQKELESLPYSQKAIAKQVDFYRPSSI 299
Q PI + + + KQ ++Q AQEL A L KE++ Q+ K+ + ++
Sbjct: 248 QEPIKEETQEIKEEKQEKTQDSPSAQELEAMQELVKEIQENSNDQEN-KKETQETQENTE 306
Query: 300 AYLELDPRDFNVTEEWQKENLKIRSKAQAKMLEMRSLKPDSQ 341
+++ ++ + +E +E ++ K Q + LE + Q
Sbjct: 307 TPQDIETQELEIPKE--EETQEVAEKTQVQGLEKEEIAETPQ 346
Score = 40.0 bits (92), Expect = 1e-04
Identities = 37/166 (22%), Positives = 78/166 (46%), Gaps = 13/166 (7%)
Query: 124 SEQIELEQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTEQERQKTEQER 183
++++E+ +E++ T + Q+ Q +K ET + ++++ Q +T QE + +++
Sbjct: 313 TQELEIPKEEE-TQEVAEKTQV---QGLEKEEIAETPQEKEIQETQDETPQELEAQDEKL 368
Query: 184 QKTEQEKQKTIKTQKDFIKYVE---QNCQENHNQFF--IEKGGIKAGIGIEV----EAEC 234
Q+ E K ++++ ++ E + QE+H + I + + +G E+ EA
Sbjct: 369 QENETPKDESMQESAQNLQDKETPQEETQEDHYESIEDIPEPVMAKAMGEELPFLNEAVA 428
Query: 235 KTPKPAKTNQTPIQPKHLPNSKQPRSQRGSKAQELIAYLQKELESL 280
K P +TP + ++ S + S EL LQ L+SL
Sbjct: 429 KIPNNENDTETPKESDIKAPQEKEESDKTSSPLELRLNLQDLLKSL 474
Score = 38.1 bits (87), Expect = 4e-04
Identities = 34/172 (19%), Positives = 77/172 (44%), Gaps = 20/172 (11%)
Query: 124 SEQIELEQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTEQERQKTEQER 183
++++E QE K +N+Q ++ ++ N ET I+ ++ + E+E Q+ ++
Sbjct: 272 AQELEAMQELVKEIQENSNDQENKKETQETQENTETPQDIETQELEIPKEEETQEVAEKT 331
Query: 184 QKTEQEKQKTIKTQKDFIKYVEQNCQENHNQFFIEKGGIKAGIGIEVEAECKTPKPAKTN 243
Q EK++ +T ++ K +++ E + + E E +TPK
Sbjct: 332 QVQGLEKEEIAETPQE--KEIQETQDETPQELEAQD---------EKLQENETPKDESMQ 380
Query: 244 QTPIQPKHLPNSKQPRSQRGSKAQELIAYLQKEL------ESLPYSQKAIAK 289
++ ++L + + P+ + E I + + + E LP+ +A+AK
Sbjct: 381 ES---AQNLQDKETPQEETQEDHYESIEDIPEPVMAKAMGEELPFLNEAVAK 429
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 42.4 bits (98), Expect = 2e-05
Identities = 47/193 (24%), Positives = 82/193 (42%), Gaps = 16/193 (8%)
Query: 8 KTNKVGKNTEMANTKANKEAHFKQASTITNIIRSIRGIFTKIAKKVRGLVKKHPKKSSAA 67
K +K K E K+ K+ II+ + LV+ PK
Sbjct: 90 KASKTPKKEETKAQPKPKKTKEKKKEAPAPIIKKKEIEIVNTFENQTPLVENTPK----- 144
Query: 68 LVVLTHIACKKAKELDDKVQDKSKQAEKENQINWWKYSGLTIATSLLLAACSTGDVSEQI 127
++H +KAK+ K+Q+ K E N++ + A S + + ++SE
Sbjct: 145 --AVSHSQIEKAKQ---KLQEIQKSREALNKLTQSNTNTTNNANSASNVSNAKKEISEVK 199
Query: 128 ELEQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTEQERQKTEQERQK-- 185
+ EQE ++ NI+ +V + +T N ET N + E +K Q ++ +K
Sbjct: 200 KQEQEIKRHENIKRRTGFRVIKRNDETEN-ETENSV---TESKKPTQSAAAIFEDIKKEW 255
Query: 186 TEQEKQKTIKTQK 198
E++KQ+T KT+K
Sbjct: 256 QEKDKQETKKTKK 268
>ref|NP_223176.1| putative [Helicobacter pylori J99]
Length = 450
Score = 37.4 bits (85), Expect = 7e-04
Identities = 18/75 (24%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 125 EQIELEQEKQKTSNIETNNQIKVEQEKQ-KTSNIETNNQIKVEQEQQKTEQERQKTEQER 183
+++ +E+++++ E +IK E K+ K +N T N +E++ + + + ++ER
Sbjct: 243 KEVRIEKKEERIDARENKREIKQEAIKEPKKANQGTENAPTLEEKNYQKAERKFDAKEER 302
Query: 184 QKTEQEKQKTIKTQK 198
+++ E++KT T+K
Sbjct: 303 RRSRDERKKTKATKK 317
Score = 33.1 bits (74), Expect = 0.012
Identities = 22/105 (20%), Positives = 47/105 (43%), Gaps = 11/105 (10%)
Query: 125 EQIELEQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVE------QEQQKTEQERQK 178
E+I+ + K++ K Q + +E N K E +E++++ ER+K
Sbjct: 252 ERIDARENKREIKQEAIKEPKKANQGTENAPTLEEKNYQKAERKFDAKEERRRSRDERKK 311
Query: 179 TEQERQKTEQEKQKTIKTQKDFIKYVEQNCQENHNQFFIEKGGIK 223
T+ ++ E E+++ ++D E+ +E ++KG K
Sbjct: 312 TKATKKAMEFEEREKEHDERD-----EKETEERRKALEMDKGNEK 351
Score = 32.7 bits (73), Expect = 0.016
Identities = 28/147 (19%), Positives = 66/147 (44%), Gaps = 34/147 (23%)
Query: 75 ACKKAKELDDKVQDKSKQAEKENQINWWKYSGLTIATSLLLAACSTGDVSEQIELEQEKQ 134
A KKA E +++ ++ ++ EKE T + + +E+++ +
Sbjct: 314 ATKKAMEFEEREKEHDERDEKE-----------------------TEERRKALEMDKGNE 350
Query: 135 KTSNIETNNQIKVEQEKQKTSNIETNNQIK-------VEQEQQKTEQERQKTEQERQKTE 187
K + E N+ ++ QE + E N +K +++ K E + +++E+++ +
Sbjct: 351 KVNAKE--NEREINQESANEPSSENNATLKDTENTSVLKESAAKKEAPKPSSKEEKRRLK 408
Query: 188 QEKQKTIKTQKDFIKYVEQNCQENHNQ 214
+EK+K Q+ + EQ +E+ +
Sbjct: 409 EEKKKAKAEQR--AREFEQRAREHQER 433
>ref|NP_222772.1| putative [Helicobacter pylori J99]
Length = 220
Score = 37.0 bits (84), Expect = 9e-04
Identities = 41/151 (27%), Positives = 69/151 (45%), Gaps = 15/151 (9%)
Query: 48 KIAKKVRGLVKKHPKKSSAALVVLTHIACKKAKELDDKVQDKSKQAEKENQINWWKYSGL 107
K A K +KH K + +V + A KE ++ ++K+ A+KEN L
Sbjct: 14 KDALKSTNFHEKHTKPTETTELVEENKALTTEKERLER-ENKNLTADKEN---------L 63
Query: 108 TIATSLLLAACSTGDVSEQIELEQEKQKTSNIETN-NQIKVEQEKQKTSNIETNNQIKVE 166
T + L + S+Q+ LE EK + N + + K+KT E N + E
Sbjct: 64 TKEKTELQKQVNELKNSKQV-LENEKADWLREKENLTKDRENLTKEKTELTEKNKVLTTE 122
Query: 167 QEQQKTEQE---RQKTEQERQKTEQEKQKTI 194
+E+ TE+E ++KTE ++Q E + K +
Sbjct: 123 KERLATEKENLTKEKTESQKQVNELKNSKQV 153
Score = 29.3 bits (64), Expect = 0.18
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 6/120 (5%)
Query: 87 QDKSKQAEKENQINWWKYSGLTIATSLLLAACSTGDVSEQIELEQEKQKTSNIETNNQIK 146
Q+ K A K + K++ T T L+ + E++E E K T++ E + K
Sbjct: 10 QENPKDALKSTNFHE-KHTKPTETTELVEENKALTTEKERLEREN-KNLTADKENLTKEK 67
Query: 147 VEQEKQKTSNIETNNQIKVEQEQQKTEQERQKTEQERQKTEQEKQKTIKTQKDFIKYVEQ 206
E +KQ + ++ + Q+ E +K + R+K + + K+KT T+K+ + E+
Sbjct: 68 TELQKQ-VNELKNSKQVL---ENEKADWLREKENLTKDRENLTKEKTELTEKNKVLTTEK 123
Score = 26.9 bits (58), Expect = 0.89
Identities = 40/195 (20%), Positives = 80/195 (40%), Gaps = 19/195 (9%)
Query: 9 TNKVGKNTEMANTKAN-KEAHFKQASTITNIIRSIRGIFTKIAKKVRGLVKKHPKKSSAA 67
+N +N + A N E H K T T ++ + + T+ K+ ++ +
Sbjct: 6 SNDTQENPKDALKSTNFHEKHTKPTET-TELVEENKALTTE---------KERLERENKN 55
Query: 68 LVVLTHIACKKAKELDDKVQD--KSKQAEKENQINWWKYSGLTIATSLLLAACSTGDVSE 125
L K+ EL +V + SKQ + + +W + L T +
Sbjct: 56 LTADKENLTKEKTELQKQVNELKNSKQVLENEKADWLREKENLTKDRENLTKEKTELTEK 115
Query: 126 QIELEQEKQKTSNIETN-NQIKVEQEKQKTSNIETNNQIKVEQEQQKTEQERQKTEQERQ 184
L EK++ + + N + K E +KQ + ++ + Q+ E +K + + T+ +
Sbjct: 116 NKVLTTEKERLATEKENLTKEKTESQKQ-VNELKNSKQV---LENEKADLTNENTKLKTD 171
Query: 185 KTE-QEKQKTIKTQK 198
KT+ EK + + T+K
Sbjct: 172 KTDLTEKNQRLTTEK 186
>ref|NP_223773.1| putative [Helicobacter pylori J99]
Length = 263
Score = 36.2 bits (82), Expect = 0.001
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Query: 124 SEQIELEQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTEQERQKTEQER 183
+E+IE EKQ +E + K E E+ + N + E+ + +++ QK EQE
Sbjct: 62 NEKIEKVTEKQGDF-LEPKEEPKEEPEESLEDIFSSLNDFQ-EKTDKNAQKDEQKNEQEE 119
Query: 184 QKTEQEKQKTIKTQKDFIKYVEQNCQENHNQF 215
Q+ +E+Q+ + Q++ + + + Q+N NQF
Sbjct: 120 QRRLREQQRLKQNQEN--QEMLKGLQQNLNQF 149
Score = 28.5 bits (62), Expect = 0.31
Identities = 26/82 (31%), Positives = 41/82 (49%), Gaps = 6/82 (7%)
Query: 121 GDVSEQIELEQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKT--EQERQK 178
GD E E +E+ + S + + + QEK T ++ K EQE+Q+ EQ+R K
Sbjct: 73 GDFLEPKEEPKEEPEESLEDIFSSLNDFQEK--TDKNAQKDEQKNEQEEQRRLREQQRLK 130
Query: 179 TEQERQKTEQEKQKTIK--TQK 198
QE Q+ + Q+ + TQK
Sbjct: 131 QNQENQEMLKGLQQNLNQFTQK 152
>ref|NP_223415.1| putative [Helicobacter pylori J99]
Length = 529
Score = 36.2 bits (82), Expect = 0.001
Identities = 29/118 (24%), Positives = 59/118 (49%), Gaps = 5/118 (4%)
Query: 124 SEQIELEQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTEQERQKTEQER 183
S++ +L+Q+ + N Q ++++ ++E ++ V E++ E+E+++ E+ER
Sbjct: 66 SQECKLQQQYE---NKNLQLQTHFDKKEAHLKHLEAQHKEFVRDEKRYLEKEKKELEKER 122
Query: 184 QKTEQEKQKTIKTQKDFIKYVEQNCQENH-NQFFIEKGGIKAGIGIEVEAECKTPKPA 240
Q EQE++ K Q+ K + + N K IK+ I ++E E + K A
Sbjct: 123 QILEQERE-NFKKQRAICKEAQAKALDAMLNYMAYTKDEIKSMILEQLEEELEAQKSA 179
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 35.8 bits (81), Expect = 0.002
Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 16/142 (11%)
Query: 80 KELDDKVQDKSKQAEKENQINWWKYSGLTIATSLLLAACSTGDVSEQIELEQEKQKTSNI 139
KELD+K + + +KE +I K + L A + ++E++ELE+EK + + +
Sbjct: 119 KELDEKSKQVQELHQKEAEIERLKRENNEAESRL--KAENEKKLNEKLELEREKIEKA-L 175
Query: 140 ETNNQIKVEQEKQKTSNIET---NNQIKVEQEQQKTEQERQKTEQE---RQKTEQEKQKT 193
N++K +Q++++ + N Q K E Q+ + E Q+ E RQK + +
Sbjct: 176 HEKNELKFKQQEEQLEMLRNELKNAQRKAELSSQQFQGEVQELAIEEFLRQKFPLDSVEE 235
Query: 194 IKTQK---DFIKYVE----QNC 208
IK + D I+ V QNC
Sbjct: 236 IKKGQRGGDCIQVVHTREFQNC 257
Score = 23.5 bits (49), Expect = 9.8
Identities = 31/149 (20%), Positives = 60/149 (39%), Gaps = 25/149 (16%)
Query: 76 CKKAKELDDKVQDKSKQAEKENQINWWKYSGLTIATSLLLAACSTGDVSEQIELEQEKQK 135
C K +E + + KQ E ENQ S LA + + Q +
Sbjct: 11 CPKCQEPINVSEALYKQIESENQ-------------SRFLAQQKAFEKEVNEKRAQYQSY 57
Query: 136 TSNIETNNQIKVEQEKQKTSN----IETNNQIKVEQEQQKTEQERQKT---EQER----- 183
N+E + E+ K++ + ++ + + ++ E+ K +E +K EQ++
Sbjct: 58 FKNLEQKEEALKERAKEQQAQFDEAVKQASALALQDERAKIIEEARKNAFLEQQKGLELL 117
Query: 184 QKTEQEKQKTIKTQKDFIKYVEQNCQENH 212
QK EK K ++ +E+ +EN+
Sbjct: 118 QKELDEKSKQVQELHQKEAEIERLKRENN 146
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 35.4 bits (80), Expect = 0.002
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 131 QEKQKTSN-IETNN---QIKVEQEKQKTSNIETNNQIKVEQEQQKTEQERQKTEQERQKT 186
QE + T N +E NN Q EQ Q+ + E Q + QEQ EQ Q+ + Q T
Sbjct: 346 QESKITDNSVELNNAQEQTAQEQTTQEQTTQEQTTQEQTTQEQTTQEQTTQEQTTQEQDT 405
Query: 187 EQEKQKTIKTQ 197
++ TIK +
Sbjct: 406 QENAPTTIKQE 416
Score = 34.3 bits (77), Expect = 0.006
Identities = 38/144 (26%), Positives = 61/144 (41%), Gaps = 15/144 (10%)
Query: 149 QEKQKTSN-IETNN-QIKVEQEQQKTEQERQKTEQERQKTEQEKQKTIKTQKDFIKYVEQ 206
QE + T N +E NN Q + QEQ EQ Q+ + Q T+++ + TQ+ + EQ
Sbjct: 346 QESKITDNSVELNNAQEQTAQEQTTQEQTTQEQTTQEQTTQEQTTQEQTTQEQTTQ--EQ 403
Query: 207 NCQENHNQFFIEKGGIKAGIGIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPRSQRGSKA 266
+ QEN ++ I I + + + K + L + R + KA
Sbjct: 404 DTQENAPTTIKQETPITPAIPLNPKIDFKPSEEV-----------LIKGAKTRYKANIKA 452
Query: 267 QELIAYLQKELESLPYSQKAIAKQ 290
EL+ LQ + E L A K+
Sbjct: 453 IELLKELQAKQEILKGDYYATLKE 476
Score = 30.0 bits (66), Expect = 0.10
Identities = 15/64 (23%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 141 TNNQIKVEQEKQKTSNIETNNQIKVEQE--QQKTEQERQKTEQERQKTEQEKQKTIKTQK 198
T+N +++ +++T+ +T + +++ Q++T QE+ EQ Q+ ++Q T +
Sbjct: 351 TDNSVELNNAQEQTAQEQTTQEQTTQEQTTQEQTTQEQTTQEQTTQEQTTQEQDTQENAP 410
Query: 199 DFIK 202
IK
Sbjct: 411 TTIK 414
Score = 29.3 bits (64), Expect = 0.18
Identities = 18/67 (26%), Positives = 31/67 (45%), Gaps = 4/67 (5%)
Query: 127 IELEQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTEQERQKTEQERQKT 186
+EL +++T+ +T EQ Q+ + E Q + QEQ EQ Q+ + +
Sbjct: 355 VELNNAQEQTAQEQTTQ----EQTTQEQTTQEQTTQEQTTQEQTTQEQTTQEQDTQENAP 410
Query: 187 EQEKQKT 193
KQ+T
Sbjct: 411 TTIKQET 417
Score = 25.4 bits (54), Expect = 2.6
Identities = 18/73 (24%), Positives = 36/73 (48%), Gaps = 6/73 (8%)
Query: 134 QKTSNIETNNQIKV---EQEKQKTSNIETNNQIKVEQEQQKTEQE---RQKTEQERQKTE 187
Q++ I T+ +IK+ + E+ K + +++ +E +E ++ EQ +Q E
Sbjct: 2082 QRSVIIPTHTEIKLYDLKNEESKDYELIKVKEVEPLKENASMSEELTHKKLKEQNKQIAE 2141
Query: 188 QEKQKTIKTQKDF 200
Q K+K +K F
Sbjct: 2142 QNKEKLDAIKKQF 2154
>ref|NP_223574.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2399
Score = 32.7 bits (73), Expect = 0.016
Identities = 30/131 (22%), Positives = 52/131 (38%), Gaps = 8/131 (6%)
Query: 133 KQKTSNIETNNQIKVEQEKQKT-----SNIETNNQIKVEQEQQKTEQERQKTEQERQKTE 187
K + N NN Q T +E NQ +++Q+++ E++ + +Q T
Sbjct: 463 KVASDNTIANNDTSYTQSSNPTILKDAQGLENTNQ-QIQQDEKALEKDLAQIKQLANSTT 521
Query: 188 QEKQKTIKTQKDFIKYVEQNCQENHNQFFIEKGGIKAGIGIEVEAECKTPKPAKTNQTPI 247
++ + + EQ Q + N F E+ G++ I A TP P + TP
Sbjct: 522 GFNEQAFTQAQKQEQQDEQALQNDENAFNTEQEGLEQAIANAKHAN-PTPNPT-PSPTPT 579
Query: 248 QPKHLPNSKQP 258
KH + P
Sbjct: 580 PIKHTAPNTPP 590
>ref|NP_224062.1| putative [Helicobacter pylori J99]
Length = 258
Score = 32.0 bits (71), Expect = 0.028
Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 28/120 (23%)
Query: 190 KQKTIKTQKDFIKYVEQNCQENHNQFFIEKGGIKAGIGIEV-EAECKTPKPAKTNQTPIQ 248
K+ + +++ +K + QN +E K +GI+ + E TPKP K +TP +
Sbjct: 57 KESVKEVKEESVKEIHQNAEE------------KQSLGIKTPQEEIITPKPPK--KTPKE 102
Query: 249 PKHLPNSKQPRSQRGSKAQELIAYLQKELESLPYSQKAIAKQVDFYRPSSIAYLELDPRD 308
H G K E+ L+ LPY + +V Y P + +++D D
Sbjct: 103 ESH----------NGDKLHEIKQELKDLFSHLPYKINKV--EVSLYEP-GVLLIDIDGED 149
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 32.0 bits (71), Expect = 0.028
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 130 EQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTEQERQKTEQERQKTEQE 189
E+EKQ+ + T K+ +E +K+ + K + E ++ E E+ T + R+ E+
Sbjct: 772 EKEKQECEKLLTPEARKLLEESKKSVKAYLDCVSKAKNEAERKECEKLLTPEARKLLEEA 831
Query: 190 KQKTIKTQKDFI 201
K+ ++K KD +
Sbjct: 832 KE-SVKAYKDCV 842
Score = 32.0 bits (71), Expect = 0.028
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 130 EQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTEQERQKTEQERQKTEQE 189
E+EKQ+ + T K+ +E +K+ + K + E ++ E E+ T + R+ E+
Sbjct: 848 EKEKQECEKLLTPEARKLLEESKKSVKAYLDCVSKAKNEAERKECEKLLTPEARKLLEEA 907
Query: 190 KQKTIKTQKDFI 201
K+ ++K KD +
Sbjct: 908 KE-SVKAYKDCV 918
Score = 27.7 bits (60), Expect = 0.52
Identities = 16/76 (21%), Positives = 39/76 (51%)
Query: 120 TGDVSEQIELEQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTEQERQKT 179
T + + +E E +K + ++ ++ + E+EKQ+ + T K+ + Q + KT
Sbjct: 1042 TPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKLLENQALDCLKNAKT 1101
Query: 180 EQERQKTEQEKQKTIK 195
E E+++ ++ K ++
Sbjct: 1102 EAEKKRCVKDLPKDLQ 1117
Score = 25.0 bits (53), Expect = 3.4
Identities = 15/53 (28%), Positives = 26/53 (48%)
Query: 143 NQIKVEQEKQKTSNIETNNQIKVEQEQQKTEQERQKTEQERQKTEQEKQKTIK 195
+Q K E EK++ + T K+ +E+ K + + KTE EK++ K
Sbjct: 583 SQAKTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEK 635
Score = 23.9 bits (50), Expect = 7.5
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 124 SEQIELEQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTEQERQKTEQER 183
++Q L++E QK N E + + QE+ +T I+ ++ +KT+Q+ +
Sbjct: 104 TQQKSLDEETQKL-NEEDDQENNEHQEETQTDLID-------DETSEKTQQDSPQDLSNE 155
Query: 184 QKTE 187
+ TE
Sbjct: 156 EATE 159
Score = 23.9 bits (50), Expect = 7.5
Identities = 15/76 (19%), Positives = 40/76 (51%), Gaps = 1/76 (1%)
Query: 120 TGDVSEQIELEQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTEQERQKT 179
T + +++E E +K + ++ ++ K E E+++ + T K+ + Q + KT
Sbjct: 638 TPEAKKKLE-EAKKSVRAYLDCVSKAKNEAERKECEKLLTPEAKKLLENQALDCLKNAKT 696
Query: 180 EQERQKTEQEKQKTIK 195
++ER++ ++ K ++
Sbjct: 697 DEERKECLKDLPKDLQ 712
Score = 23.5 bits (49), Expect = 9.8
Identities = 52/231 (22%), Positives = 96/231 (41%), Gaps = 36/231 (15%)
Query: 125 EQIELEQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTEQERQKTEQERQ 184
+++EL++E Q+ + N K E EK + + I+ ++Q + KT++ER+
Sbjct: 429 KELELQKELQEYKDCIKN--AKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERK 486
Query: 185 K----TEQEKQK------TIKTQKDFIKYV-----EQNCQE---NHNQFFIEKGG---IK 223
+ Q+ QK ++K KD + +Q C++ + +E +K
Sbjct: 487 ECLKNIPQDLQKELLADMSVKAYKDCVSRARNEKEKQECEKLLTPEAKKLLENQALDCLK 546
Query: 224 AGIGIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPRSQRGSKAQELIAYLQKELESL--P 281
E EC P + + L K SQ ++A+ +KE E L P
Sbjct: 547 NAKTDEERKECLKNLPKDLQSDILAKESLKAYKDCASQAKTEAE------KKECEKLLTP 600
Query: 282 YSQKAIAKQVDFYRPSSIAYLELDPRDFNVTEEWQKENLKIRSKAQAKMLE 332
++K + ++ + S AYL+ + TE +KE K+ + K LE
Sbjct: 601 EAKKLLEEEA---KESVKAYLDCVSQ--AKTEAEKKECEKLLTPEAKKKLE 646
>ref|NP_223664.1| putative [Helicobacter pylori J99]
Length = 466
Score = 31.6 bits (70), Expect = 0.036
Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 19/116 (16%)
Query: 123 VSEQIELEQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTEQERQKTEQE 182
++E+I+L Q+ +N N+ KV KT+ T + + + Q E+ + +Q
Sbjct: 57 ITERIKLAQDTLDRANQTLNSINKVNDVLNKTNQFLTGSILSIPNPMQYVEKIQSFAKQV 116
Query: 183 RQKTEQEKQKT----IKTQKDFIKYVEQNCQE--------------NHNQFFIEKG 220
+ TE+ K+ I+ Q K + + C E N +QFF KG
Sbjct: 117 QANTERIKENAQNYDIRNQ-IAAKRISEKCPELNWDVSQDASPTEKNLHQFFTSKG 171
Score = 25.4 bits (54), Expect = 2.6
Identities = 15/69 (21%), Positives = 27/69 (38%)
Query: 120 TGDVSEQIELEQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTEQERQKT 179
TG + Q +K + Q E+ K+ N + NQI ++ +K +
Sbjct: 93 TGSILSIPNPMQYVEKIQSFAKQVQANTERIKENAQNYDIRNQIAAKRISEKCPELNWDV 152
Query: 180 EQERQKTEQ 188
Q+ TE+
Sbjct: 153 SQDASPTEK 161
>ref|NP_223515.1| putative [Helicobacter pylori J99]
Length = 541
Score = 31.6 bits (70), Expect = 0.036
Identities = 19/85 (22%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 130 EQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTEQERQKTEQERQKTEQE 189
E+E+ KT E ++ +T N E+ N ++ K E + +++E+++ ++E
Sbjct: 442 EEEEVKTRRPEPTKDQNNAIQQGETKNNESKNTPISKENAAKKEAPKPSSKEEKRRLKEE 501
Query: 190 KQKTIKTQKDFIKYVEQNCQENHNQ 214
K+K Q+ + EQ +E+ +
Sbjct: 502 KKKAKAEQR--AREFEQRAREHQER 524
>ref|NP_223889.1| putative [Helicobacter pylori J99]
Length = 219
Score = 31.2 bits (69), Expect = 0.047
Identities = 21/81 (25%), Positives = 43/81 (52%), Gaps = 3/81 (3%)
Query: 130 EQEKQKTSNIETNNQIK--VEQEKQKTSNIETNNQIKVEQEQQKTEQERQKTEQE-RQKT 186
++E T+ N K V T E +IK E +Q+ ++ +Q+ +QE +Q+T
Sbjct: 63 KEEANATTTATEQNPTKDTVPPLDTATQKQEIKQEIKQEIKQEIKQEIKQEIKQEIKQET 122
Query: 187 EQEKQKTIKTQKDFIKYVEQN 207
+QE++K K +++ + V+ +
Sbjct: 123 KQEQEKENKPKQNSVSPVQND 143
Score = 31.2 bits (69), Expect = 0.047
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 148 EQEKQKTSNIETNNQIKVEQEQQKTEQERQKTEQERQKTEQEKQKTI 194
+QE ++ E +IK E +Q+ ++ +Q+T+QE++K + KQ ++
Sbjct: 91 KQEIKQEIKQEIKQEIKQEIKQEIKQEIKQETKQEQEKENKPKQNSV 137
Score = 29.3 bits (64), Expect = 0.18
Identities = 23/106 (21%), Positives = 47/106 (43%), Gaps = 5/106 (4%)
Query: 91 KQAEKENQINWWKYSGLTIATSLLLAACSTGDVSEQIELEQEKQKTSNIETNNQIKVEQE 150
+++E E Q + + AT+ T D ++ +KQ E +IK E +
Sbjct: 49 EKSETERQNSTFSPKEEANATTTATEQNPTKDTVPPLDTATQKQ-----EIKQEIKQEIK 103
Query: 151 KQKTSNIETNNQIKVEQEQQKTEQERQKTEQERQKTEQEKQKTIKT 196
++ I+ + +++QE ++ +++ K +Q Q QKT T
Sbjct: 104 QEIKQEIKQEIKQEIKQETKQEQEKENKPKQNSVSPVQNDQKTPTT 149
>ref|NP_223159.1| putative [Helicobacter pylori J99]
Length = 181
Score = 31.2 bits (69), Expect = 0.047
Identities = 32/131 (24%), Positives = 53/131 (40%), Gaps = 31/131 (23%)
Query: 77 KKAKELDDKVQDKSKQAEKENQINWWKYSGLTIATSLLLAACSTGDVSEQIELEQEKQKT 136
K A E+D ++ N I W +G ++ T ++++ ++
Sbjct: 65 KNANEIDSSLR---------NSIEWLSNAGESLKT----------------KMKEYERFF 99
Query: 137 SNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTEQERQKTEQERQKTEQEKQKTIKT 196
S T+ EQE T N T N ++ E +K E Q E+ R EQE QK++K
Sbjct: 100 SEFNTSMHAN-EQEVTATLNANTEN---IKSEIKKLEN--QLIEETRMLLEQETQKSVKA 153
Query: 197 QKDFIKYVEQN 207
+ + QN
Sbjct: 154 YNAMMGHQPQN 164
>ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEIN [Helicobacter pylori
J99]
Length = 280
Score = 30.4 bits (67), Expect = 0.080
Identities = 25/111 (22%), Positives = 50/111 (44%), Gaps = 13/111 (11%)
Query: 164 KVEQEQQKTEQERQKTEQERQKTEQEKQKTIKTQKDFIKYVEQNCQENHNQFFIEKGGIK 223
KVE+ +++ +E K E+ +++ +++ T KD +K E++ QE N K
Sbjct: 124 KVEEPKKEEPKEEPKKEEAKEEAKEKSVPKQVTTKDIVK--EKDKQEESN---------K 172
Query: 224 AGIGIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPRSQ--RGSKAQELIAY 272
G EA+ P + IQ ++ P+ RG + + L+++
Sbjct: 173 TSEGATSEAQAYNPGVSNEFLMKIQTAISSKNRYPKMAQIRGIEGEVLVSF 223
>ref|NP_223534.1| putative [Helicobacter pylori J99]
Length = 614
Score = 30.4 bits (67), Expect = 0.080
Identities = 32/164 (19%), Positives = 66/164 (39%), Gaps = 5/164 (3%)
Query: 121 GDVSEQIELEQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTEQ-ERQKT 179
G Q EL+ KQK + + ++ K+ + Q +++ NNQ+ +E+ + TE+ +R
Sbjct: 451 GGRENQEELKNAKQKLNALGVKSK-KIIAQHQSLNHLVKNNQVIMEKLKNATEEIKRSLM 509
Query: 180 EQERQKTEQEKQKTIKTQKDFIKYVEQNCQENHNQFFIEKGGIKAGIGIEVEAECKTPKP 239
+QE K + + +K Q+ +N+ + + I+ A T P
Sbjct: 510 QQESVKDAYSEFVFALKRLKILKAQMLELQKINNECYAKLISIENSF---QHASITTKNP 566
Query: 240 AKTNQTPIQPKHLPNSKQPRSQRGSKAQELIAYLQKELESLPYS 283
K I ++ P + + Y +++ +P S
Sbjct: 567 FKQENIVIYHRNYPKVSNLSAMLSHNESVDVIYEDHKIKKVPKS 610
>ref|NP_223206.1| cag island protein [Helicobacter pylori J99]
Length = 381
Score = 30.4 bits (67), Expect = 0.080
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 2/98 (2%)
Query: 129 LEQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQ--KTEQERQKTEQERQKT 186
+E S + N ++ VE++K T N QI +++ + K + +Q E K
Sbjct: 110 MEGYSSALSALGGNVKMIVEKQKINTQTEIQNMQIALQKNNEIIKLKMNQQNALLEALKN 169
Query: 187 EQEKQKTIKTQKDFIKYVEQNCQENHNQFFIEKGGIKA 224
E T+KTQ + + + +N GIKA
Sbjct: 170 SFEPSVTLKTQMEMLSQALGSSSDNAQYIAYNTIGIKA 207
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 30.0 bits (66), Expect = 0.10
Identities = 30/124 (24%), Positives = 51/124 (40%), Gaps = 10/124 (8%)
Query: 105 SGLTIATSLLLAACSTG--DVSEQIELEQEKQKTSNIET-NNQIKVEQEKQK------TS 155
SG T +S L G D ++ ++ IE N Q K EQ + T
Sbjct: 53 SGKTTTSSFLKNLAENGIEDKFANSKIAWYNNESLKIEVYNKQFKEEQLRNSQVKGIFTL 112
Query: 156 NIETNNQI-KVEQEQQKTEQERQKTEQERQKTEQEKQKTIKTQKDFIKYVEQNCQENHNQ 214
+TN + K+E +++ +E +K + + QK K +KDF +N + + +
Sbjct: 113 GKKTNENLEKIESKKESINKENEKKIKNEASLQVLTQKKEKEEKDFTDSCWKNLYKKNEE 172
Query: 215 FFIE 218
F E
Sbjct: 173 EFKE 176
Score = 23.5 bits (49), Expect = 9.8
Identities = 18/79 (22%), Positives = 38/79 (47%), Gaps = 2/79 (2%)
Query: 125 EQIELEQEKQ--KTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTEQERQKTEQE 182
E I E EK+ ++++ Q K ++EK T + N K E+E ++ + ++ E+
Sbjct: 128 ESINKENEKKIKNEASLQVLTQKKEKEEKDFTDSCWKNLYKKNEEEFKEILEGFKRKEKF 187
Query: 183 RQKTEQEKQKTIKTQKDFI 201
+ K +E + Q + +
Sbjct: 188 KGKILKEFENDKHNQSEIV 206
>ref|NP_223617.1| putative [Helicobacter pylori J99]
Length = 500
Score = 30.0 bits (66), Expect = 0.10
Identities = 49/222 (22%), Positives = 91/222 (40%), Gaps = 25/222 (11%)
Query: 164 KVEQEQQKTEQERQKTEQERQKTEQEKQKTIKTQKDFIKYV-EQNCQENHNQFFIEKGGI 222
++E E +K E+E + +E K ++EKQ K+ I+ V + N + IEK
Sbjct: 116 ELENEHEKYEREFNRIVEEEVKKQKEKQSLSNRAKEGIRNVGNKMLGRNKSDEEIEKRAE 175
Query: 223 KAGIGIEVEAEC----------KTPKPAKTNQTPIQPKHLPNSKQPRSQRGSKAQELIAY 272
+ E+E + K K N + P+ NS Q +Q+ L+ +
Sbjct: 176 RIAKN-ELEKDTKLVSSHDQYEKIKKSGSLNTKNLDPRIQANSLQELNQK------LLQF 228
Query: 273 LQKELESLPYSQKAIAKQVDFYRPSSIAYLELDPRDFNVTEEWQKENLKIRSKAQAKMLE 332
+ + + +PY++ A ++ P+ +D N ++E R+KA K +
Sbjct: 229 VGADGKYMPYTK---AVRISLNNPNLKDLEVIDTPGVNDPIASREE----RTKALLKDCD 281
Query: 333 MRSLKPDSQAHLSTSQSLLFVQKIFADVNKEIKVVANTEKKA 374
+ + S L+ S LF + + +EI VA+ A
Sbjct: 282 VVFIVSPSGQFLTDSDMSLFDRVSHKEGLQEIYFVASQADSA 323
>ref|NP_223610.1| putative [Helicobacter pylori J99]
Length = 267
Score = 30.0 bits (66), Expect = 0.10
Identities = 40/179 (22%), Positives = 76/179 (42%), Gaps = 18/179 (10%)
Query: 122 DVSEQIELEQEKQKTSNIET-NNQIKVEQEKQKTSNIETNNQIKVEQEQQKTEQERQKTE 180
++ E I E+ Q IE N+IK + EKQ+ E K+ E + + K
Sbjct: 94 NIEEDIAKERSNQANREIENLQNEIKHKSEKQEVLKKEMLELEKLALELENLVENEVKNI 153
Query: 181 QERQKTEQEKQKTI--KTQKDFIKYVE--QNCQENHNQFFIEK---GGIKAGIGIEVEAE 233
+E Q+ +K++ + KT+ + E + +N + I+K GG + ++ AE
Sbjct: 154 KETQQIIFKKKEELVEKTEPKIYSFYERIRRWAKNTSIVTIKKQACGGCFIRLNDKIYAE 213
Query: 234 CKTPK-----PAKTNQTPIQPKHLPNSKQPRSQRGSKAQELIAYLQKELESLPYSQKAI 287
T P + H N++ P+ + ++QE + + ES SQ+++
Sbjct: 214 VLTSGDMITCPYCGRILYAESTHESNAQPPKESQPKESQE-----ESQEESQEESQESV 267
>ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99]
Length = 856
Score = 30.0 bits (66), Expect = 0.10
Identities = 41/180 (22%), Positives = 77/180 (42%), Gaps = 25/180 (13%)
Query: 125 EQIELEQEKQKTSNIETNN----QIKVEQEKQKTSNIETNNQIKVEQE------QQKTEQ 174
+++E+E++ + N E+N+ +I E K I+ Q + E+E + K E
Sbjct: 417 QRLEMEKQALEMENKESNHKRMQEILKELSDLKEEKIQLEAQFENEKEVFKEISRLKMEM 476
Query: 175 ERQKTEQERQKTEQEKQKTIKTQKDFIKYVEQNCQE-NHNQFFIEKGGIKAGIGIEVEAE 233
E K E ER K + Q+ + + I E+ +E H +++ G +
Sbjct: 477 EGLKKEAERFKRNGDYQQAAEIEYSKIPEKEKKEKELQHKWETMQQNGALLQNAL----- 531
Query: 234 CKTPKPAKTNQTPI--QPKHLPNSKQPRSQRGSKAQELIAYLQKELESLPYSQKAIAKQV 291
+ N I Q H+P K +S++ ++ + + LQK + + KAIAK +
Sbjct: 532 ------TENNIAEIVSQWTHIPVQKMLQSEK-NRVLNIESELQKRVVGQEKALKAIAKAI 584
>ref|NP_223322.1| putative [Helicobacter pylori J99]
Length = 413
Score = 29.6 bits (65), Expect = 0.14
Identities = 42/174 (24%), Positives = 63/174 (36%), Gaps = 10/174 (5%)
Query: 10 NKVGKNTEMANTKANKEAHFKQASTITNIIRSIRGIFTKIAKKVRGLVKKHPKKSSAALV 69
NK K A K E H A T I + + + +G+ PK
Sbjct: 63 NKEEKKETKAKRKPRAEVHHGDAKNPTPKITPPKIKGSSKGVQNQGVQNNAPKPEEKDT- 121
Query: 70 VLTHIACKKAKELDDKVQDKSKQAEKENQINWWKYSGLTIATSLLLAACSTGDVSEQIEL 129
T A +K KE Q S N N + SLL+ QI+
Sbjct: 122 --TPQATEKNKETSPSSQFNSIFGNPNNATNNTLEDKVVGGISLLVNGSPI--TLYQIQE 177
Query: 130 EQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTEQERQKTEQER 183
EQEK K S + +++ E+ K IE ++K+ + K +QE Q++
Sbjct: 178 EQEKSKVSKAQARDRLIA--ERIKNQEIE---RLKIHVDDDKLDQEMAMMAQQQ 226
>ref|NP_223625.1| putative [Helicobacter pylori J99]
Length = 362
Score = 28.9 bits (63), Expect = 0.23
Identities = 19/77 (24%), Positives = 37/77 (47%), Gaps = 1/77 (1%)
Query: 130 EQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTEQERQKTEQERQKTEQE 189
+QE QK++N + Q + ET ++E+ Q + Q ++ E + +EQ
Sbjct: 220 DQELQKSANSNLDLDPIGNAMPQTLAQTETQKS-QIEKSQIEEAQTQKSQEMKEAASEQA 278
Query: 190 KQKTIKTQKDFIKYVEQ 206
+K ++ +KD Y+ Q
Sbjct: 279 IKKPLEKEKDKPMYLAQ 295
>ref|NP_223158.1| putative [Helicobacter pylori J99]
Length = 912
Score = 28.9 bits (63), Expect = 0.23
Identities = 27/121 (22%), Positives = 51/121 (41%), Gaps = 17/121 (14%)
Query: 121 GDVSEQIELEQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQ---IKVEQEQQKTEQERQ 177
G+ Q L ++ N E NN+ QE + S +E N K+E E + +EQE
Sbjct: 195 GNNPTQKPLTSQEDLLKNTELNNE--TTQEVKNLSLLEQANAEKLAKLESEAKVSEQEFL 252
Query: 178 KTEQERQKTEQEKQKTIKTQKDFIKYVEQNCQENHNQFFIEKGGIKAGIGIEVEAECKTP 237
K +++ K + +K ++ ++ +E + I+ G I + + + P
Sbjct: 253 KAKEQEAKRKVALKKKLEHERGNAGNIESQTK------------IEVGEDIPTQIQAQIP 300
Query: 238 K 238
K
Sbjct: 301 K 301
Score = 25.0 bits (53), Expect = 3.4
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 119 STGDVSEQIELEQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQE 168
S VSEQ E + K++ + + + K+E E+ NIE+ +I+V ++
Sbjct: 242 SEAKVSEQ-EFLKAKEQEAKRKVALKKKLEHERGNAGNIESQTKIEVGED 290
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 28.5 bits (62), Expect = 0.31
Identities = 36/175 (20%), Positives = 68/175 (38%), Gaps = 18/175 (10%)
Query: 70 VLTHIACKKAKELDDKVQDKSKQAEKENQINWWKYSGLTIATSLLL---AACSTGDVSEQ 126
V+ A K EL K KS K+N S LT+ + + +G
Sbjct: 219 VVVEQAINKKNELVLKTMYKSNGDYKDNNAYKKFSSTLTLNADAKVNHGLSSHSGATENL 278
Query: 127 IELEQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQ---IKVEQEQQKTEQERQKTEQER 183
+ Q+ +T N + + S +E N K+E EQ ++EQE K +++
Sbjct: 279 TQKPLTSQEDLLKDTENLNETTPKPTHLSPLELANAEKLAKLESEQLQSEQEFLKAKEQE 338
Query: 184 QKTEQEKQKTIKTQKDFIKYVEQNCQENHNQFFIEKGGIKAGIGIEVEAECKTPK 238
K ++ +K ++ ++ ++E + I+ G I + + + PK
Sbjct: 339 LKRKEALKKKLEHERGNAGHIESQTK------------IEVGEDIPTQVQAQIPK 381
>ref|NP_223444.1| putative TYPE I RESTRICTION ENZYME (SPECIFICITY SUBUNIT)
[Helicobacter pylori J99]
Length = 454
Score = 28.5 bits (62), Expect = 0.31
Identities = 13/42 (30%), Positives = 20/42 (46%)
Query: 344 LSTSQSLLFVQKIFADVNKEIKVVANTEKKAEKAGYGYSKRM 385
L Q ++ + F ++N E+ NTE A K Y Y + M
Sbjct: 170 LEIQQEIVTILDAFTELNTELNTELNTELNARKKQYQYYQNM 211
>ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter pylori J99]
Length = 831
Score = 28.1 bits (61), Expect = 0.40
Identities = 18/76 (23%), Positives = 40/76 (51%), Gaps = 6/76 (7%)
Query: 127 IELEQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTEQERQKTEQERQKT 186
I++ E+ KT ++ + KV Q+ ++T N+ +EQ K Q+ T+++R +
Sbjct: 195 IDIVIEETKTQKLQKEIKSKVHQKMEQT------NKEYFLKEQLKQIQKELGTDKQRDED 248
Query: 187 EQEKQKTIKTQKDFIK 202
+ + +++ K F+K
Sbjct: 249 LNQYYQKLESIKPFLK 264
Score = 24.3 bits (51), Expect = 5.8
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 189 EKQKTIKTQKDFIKYVEQNCQENHNQFFIEK 219
E+ KT K QK+ V Q ++ + ++F+++
Sbjct: 200 EETKTQKLQKEIKSKVHQKMEQTNKEYFLKE 230
>ref|NP_223706.1| histidine kinase [Helicobacter pylori J99]
Length = 815
Score = 28.1 bits (61), Expect = 0.40
Identities = 27/131 (20%), Positives = 51/131 (38%), Gaps = 5/131 (3%)
Query: 68 LVVLTHIACKKAKELDDKVQDKSKQAEKENQINWWKYSGLTIATSLLLAACSTGDVSEQI 127
L +T + AKE + K+ +KEN+ K T S ++++
Sbjct: 126 LQAITSQNLEGAKETSGTKEAPEKEVKKENKEKA-KEEVKANKTPTTENLTSDNPLADEP 184
Query: 128 ELEQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTEQERQKTEQERQKTE 187
+L+ +E ++E+ K + + + +QE Q ++ +E KTE
Sbjct: 185 DLDYANMSAEEVEA----EIERLLNKRQEADKERRAQKKQEDQAKPKQEVAPAKETPKTE 240
Query: 188 QEKQKTIKTQK 198
K +T K K
Sbjct: 241 TPKTETRKVPK 251
>ref|NP_223477.1| putative [Helicobacter pylori J99]
Length = 153
Score = 28.1 bits (61), Expect = 0.40
Identities = 15/52 (28%), Positives = 25/52 (47%)
Query: 266 AQELIAYLQKELESLPYSQKAIAKQVDFYRPSSIAYLELDPRDFNVTEEWQK 317
A E++ Y+ K+ I KQ FYRPS++ +D + E ++K
Sbjct: 88 ALEILGYVPKDSLEKANFYAPIKKQAQFYRPSALGLFHNPIKDARLHECFEK 139
>ref|NP_222774.1| putative [Helicobacter pylori J99]
Length = 327
Score = 28.1 bits (61), Expect = 0.40
Identities = 23/87 (26%), Positives = 43/87 (48%), Gaps = 15/87 (17%)
Query: 120 TGDVSEQIELEQEK-----------QKTSNIETNNQIKVEQEKQKTS---NIE-TNNQIK 164
T +E+ LEQE+ ++ +N+E NQ ++ KQ S ++E TNNQ++
Sbjct: 177 TALTNERDSLEQERARLQDAHGFLEKRCTNLEKENQRLTDKLKQLESAQKSLENTNNQLR 236
Query: 165 VEQEQQKTEQERQKTEQERQKTEQEKQ 191
E + + K + +K+E E++
Sbjct: 237 QALENSNVQLAQAKEKIAIEKSELERE 263
Score = 24.3 bits (51), Expect = 5.8
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 128 ELEQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTEQERQKT 179
+LE ++ N TNNQ++ E + +I +E+ + + E R K+
Sbjct: 220 QLESAQKSLEN--TNNQLRQALENSNVQLAQAKEKIAIEKSELEREIARLKS 269
>ref|NP_223659.1| putative [Helicobacter pylori J99]
Length = 677
Score = 27.3 bits (59), Expect = 0.68
Identities = 57/301 (18%), Positives = 108/301 (34%), Gaps = 56/301 (18%)
Query: 78 KAKELDDKVQDKSKQ---AEKENQINWWKYSGLTIATSLLLAACSTGDVSEQIELEQEKQ 134
K K LD ++ DK+ A+ N++ + + T+ +L A + +EL ++K+
Sbjct: 394 KLKHLDKRLLDKNSHLLLAQLRNEVKTKQNTQYNTLTNPILLA-------KALELSKDKR 446
Query: 135 KTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTEQERQKTEQERQKTEQEKQKTI 194
T N + + + +T + T + K Q+ Q T +
Sbjct: 447 PTLKTFKNAYFSARKYQFMLESFKTKQNDPTYKLNDNTYELVSKQLQDYQNT------ML 500
Query: 195 KTQKDFIKYVEQNCQENHNQFFIEKGGIKAGIGIEVEAECKTPKPAKTNQTPIQPKHLPN 254
K+ + ++EQ+ ++ +F K E K+ K + +T + PK
Sbjct: 501 LLAKERLLFLEQDLKQKEEEFERAK-----------EHYVKSSKHYR--ETSLSPKEKQG 547
Query: 255 SKQPRSQRGSKAQELIAYLQKELESLP-----YSQKAIAKQVDFYRPSSIAYLELDP--R 307
+ Q SK + I Y E+ Y + K ++ + + + E+ +
Sbjct: 548 FLKQIKQF-SKISKDILYTCNEIIGANRFLTHYDNLNLEKVLEHAKDTKLEQKEIQAITK 606
Query: 308 DFNVTEEW-------------------QKENLKIRSKAQAKMLEMRSLKPDSQAHLSTSQ 348
+ N E W +KE K +K QA L L D +AH Q
Sbjct: 607 EPNNDEPWIEFGKKEQARAKAHYQAMLEKEKAKELAKQQANTLHSNELDDDPKAHAGLKQ 666
Query: 349 S 349
+
Sbjct: 667 N 667
>ref|NP_223641.1| putative [Helicobacter pylori J99]
Length = 268
Score = 27.3 bits (59), Expect = 0.68
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 155 SNIETNNQIKVEQEQQKTEQERQKTEQERQKTEQEKQKTIKTQKDFIK 202
+ I+T NQ+K E + + +KT+++ QK KDF K
Sbjct: 61 NKIDTINQVKPNDETKSVNENIEKTQKDLDDFNALVQKLPNLPKDFNK 108
>ref|NP_223272.1| putative efflux transporter [Helicobacter pylori J99]
Length = 1028
Score = 26.9 bits (58), Expect = 0.89
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 13/116 (11%)
Query: 242 TNQTPIQPK---HLPNSKQPRSQRGSKAQELIAYLQKELESLPYSQKAIAKQVDFYRPSS 298
T Q P + K L K+ + + EL++ L+KEL+S+P AK +D S
Sbjct: 591 TTQNPFKAKIFVQLKPLKERKKEHELGQFELMSALKKELKSMPE-----AKDLDSINLSE 645
Query: 299 IAYL----ELDPRDFNVTEEWQKENLKIRSKAQAKMLEMRSLKPDSQA-HLSTSQS 349
+A + + P V Q+ K + +LE LK ++ H STS+S
Sbjct: 646 VALIGGGGDSSPFQTFVFSHSQEAVDKSVENLRKFLLESPELKGKVESYHTSTSES 701
>ref|NP_222912.1| putative [Helicobacter pylori J99]
Length = 916
Score = 26.9 bits (58), Expect = 0.89
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 143 NQIKVEQEKQKTSNIETNNQIKVEQEQQKTEQERQKTEQERQKTEQEKQKTIKTQKDFIK 202
N+I + E K S I+ + +++ + ++ +K QE +QE K IK KDF
Sbjct: 450 NKIWIPLEFNKRSKIKFDKDLEIYFDSHESFNISKKYLQE---IDQESLKKIKQSKDFFS 506
Query: 203 YVEQNCQENHN 213
+ + ++N
Sbjct: 507 IQKIESKHDNN 517
Score = 25.0 bits (53), Expect = 3.4
Identities = 30/140 (21%), Positives = 61/140 (43%), Gaps = 11/140 (7%)
Query: 70 VLTHIACKKAKELDDK-VQDKSKQAEKENQI----NWWKYSGLTIATSLLLAACSTGDVS 124
+ +H+ A E+ + ++D K+ E+ ++I ++ K++ T ++ ++
Sbjct: 152 IYSHLKELSASEIKPQDMEDILKKLEELDKIFKTTDFTKFTPKTEIKDIIKEIDEKYPIN 211
Query: 125 EQIELEQEKQKTSNIETNNQIKVEQEKQKTSNI-----ETNNQIKVEQEQQKTEQERQKT 179
E + Q + SNIE +++IK + E+ K S I N+ E+E + + K
Sbjct: 212 ENFK-RQFNEFESNIEKHDEIKKDFERNKESLIREIENHCKNECNSEEEPEYKINDLLKN 270
Query: 180 EQERQKTEQEKQKTIKTQKD 199
Q+ K E KD
Sbjct: 271 IQQICKNYIESHAVNDVSKD 290
>ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 849
Score = 26.6 bits (57), Expect = 1.2
Identities = 17/57 (29%), Positives = 27/57 (46%), Gaps = 3/57 (5%)
Query: 139 IETNNQIKVEQEKQKTSNIETNNQI---KVEQEQQKTEQERQKTEQERQKTEQEKQK 192
+E + +EQ +Q S E + K +E+ KTE K Q KTE +++K
Sbjct: 460 LEEERKKALEQAEQGCSIGENKEEAVASKENKEENKTEAAAPKENQTENKTEVKEEK 516
>ref|NP_223561.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 363
Score = 26.6 bits (57), Expect = 1.2
Identities = 21/87 (24%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 120 TGDVSEQIELEQEKQKTSNIETNNQIKVEQEKQK----TSNIETNNQIK--VEQEQQKTE 173
TG + Q +++ + ++ N +K+ E+ K T+ +ET+ I + Q + +
Sbjct: 9 TGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQ 68
Query: 174 QERQKTEQERQKTEQEKQKTIKTQKDF 200
+E +KT QE + ++T ++ KDF
Sbjct: 69 EENKKTMQEVASAMKSNKETNESLKDF 95
>ref|NP_223044.1| FLAGELLAR M-RING PROTEIN [Helicobacter pylori J99]
Length = 567
Score = 26.6 bits (57), Expect = 1.2
Identities = 19/83 (22%), Positives = 33/83 (38%), Gaps = 16/83 (19%)
Query: 123 VSEQIELEQEKQKTSNIETNNQIKVEQEKQK----------------TSNIETNNQIKVE 166
V+ + + Q+K + NN ++ EQ ++ SNI +K
Sbjct: 271 VNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGAPKKQVGGVPGVVSNIGPVQGLKDN 330
Query: 167 QEQQKTEQERQKTEQERQKTEQE 189
+E +K E+ + T E KT E
Sbjct: 331 KEPEKYEKSQNTTNYEVGKTISE 353
>ref|NP_224041.1| putative [Helicobacter pylori J99]
Length = 692
Score = 26.2 bits (56), Expect = 1.5
Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 11/99 (11%)
Query: 141 TNNQIKVEQEKQK---TSNIETNNQIKVEQEQQKTEQERQKTEQERQKTEQEKQKTIKTQ 197
TN + + + QK +SN ET + K E K K + QKT ++ +
Sbjct: 33 TNRKKRFRENAQKNAESSNHETLSHHKKEHRPNKKPNNHHKPKHASQKTRNYAKEELDNN 92
Query: 198 K-----DFIKYVEQNCQENHNQFFIEKGGIKAGIGIEVE 231
K + + E+ H + K G++A I+VE
Sbjct: 93 KVEGVTEILHVNERGTLGFHKEL---KKGVEANNKIQVE 128
>ref|NP_223219.1| putative [Helicobacter pylori J99]
Length = 321
Score = 26.2 bits (56), Expect = 1.5
Identities = 18/67 (26%), Positives = 32/67 (46%), Gaps = 6/67 (8%)
Query: 157 IETNNQIKVEQEQQKTEQERQKTEQERQKTEQEKQKTIKTQKDFIKYVEQNCQ------E 210
I+ ++ +K E+EQ++ + K + E++K T K K+ EQ+ Q E
Sbjct: 169 IQNSSSLKEEREQERAIKPDTKNNSFNETNPTEEKKLEPTPKLEEKHKEQDKQGKEAIKE 228
Query: 211 NHNQFFI 217
N N +I
Sbjct: 229 NPNTIYI 235
Score = 24.6 bits (52), Expect = 4.4
Identities = 12/53 (22%), Positives = 27/53 (50%)
Query: 139 IETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTEQERQKTEQERQKTEQEKQ 191
I+ ++ +K E+E+++ +T N E + ++ + E + EQ+KQ
Sbjct: 169 IQNSSSLKEEREQERAIKPDTKNNSFNETNPTEEKKLEPTPKLEEKHKEQDKQ 221
>ref|NP_223195.1| cag island protein [Helicobacter pylori J99]
Length = 522
Score = 26.2 bits (56), Expect = 1.5
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 131 QEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTEQERQKTEQERQKTEQEK 190
QE KT + + E E+QK + +E+E++ EQ ++ + +R+K ++E+
Sbjct: 123 QEFLKTKKLIVDAPDPKELEEQKKA---------LEKEKEAKEQAQKAQKDKREKRKEER 173
Query: 191 QKTIKTQKDFIKYVE--QNCQENHN 213
K ++ + QN N N
Sbjct: 174 AKNRANLENLTNAMSNPQNLSNNKN 198
Score = 23.5 bits (49), Expect = 9.8
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 122 DVSEQIELEQE--KQKTSNIETNNQIKVEQEKQKTSNIE--TNNQIKVEQEQQKTEQERQ 177
+ EQ + Q+ ++K N+ +E SN + +NN+ E +Q+ E E
Sbjct: 153 EAKEQAQKAQKDKREKRKEERAKNRANLENLTNAMSNPQNLSNNKNLSELIKQQRENELD 212
Query: 178 KTEQERQKTEQEKQKTIKTQKDFIK 202
+ E+ EQ + +K ++ K
Sbjct: 213 QMERLEDMQEQAQANALKQIEELNK 237
>ref|NP_222840.1| putative [Helicobacter pylori J99]
Length = 285
Score = 26.2 bits (56), Expect = 1.5
Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 4/116 (3%)
Query: 77 KKAKELDDKVQDK-SKQAEKENQINWWKYSGLTIAT---SLLLAACSTGDVSEQIELEQE 132
+KA+++D V K +QAEK+ + + K S + + S + S S +L+
Sbjct: 170 EKARKVDAIVLKKMEEQAEKDTKAAFQKRSSGELESHTDSPEFISSSKTQNSSNPDLDPM 229
Query: 133 KQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTEQERQKTEQERQKTEQ 188
+ ET ++ K++ + K E++QQ +QE +K + K+E+
Sbjct: 230 TNANTLKETASKEPETSSKKEKKPKKKRRLSKKEKQQQALQQEFEKQISDSSKSEK 285
>ref|NP_222874.1| putative [Helicobacter pylori J99]
Length = 157
Score = 25.8 bits (55), Expect = 2.0
Identities = 14/54 (25%), Positives = 28/54 (50%), Gaps = 2/54 (3%)
Query: 151 KQKTSNIETNNQIKVEQEQQKTEQERQKTEQERQKTEQEK--QKTIKTQKDFIK 202
K + +E N K+E +++ TE++ + E ++ QE Q I ++ F+K
Sbjct: 52 KNANTPLEPKNAAKIETQEKITEEKEEAKEIITEEIVQENPTQALIPNERVFLK 105
>ref|NP_224048.1| putative [Helicobacter pylori J99]
Length = 187
Score = 25.4 bits (54), Expect = 2.6
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 48 KIAKKVRGLVKKHPKKSSAALVVLTHIACKKAKELDDKVQDKSKQ 92
+IA+K+R ++KKH + ++L H K+A K Q K+ Q
Sbjct: 37 RIAQKIRNILKKHGSRKD---IILKHNEIKEAFFSPFKPQLKTVQ 78
>ref|NP_224039.1| putative histidine and glutamine-rich metal-binding protein
[Helicobacter pylori J99]
Length = 77
Score = 25.4 bits (54), Expect = 2.6
Identities = 15/72 (20%), Positives = 34/72 (46%), Gaps = 11/72 (15%)
Query: 125 EQIELEQEKQKTSNIETNNQIKVEQEK-----------QKTSNIETNNQIKVEQEQQKTE 173
EQ Q++Q+ +N + ++ V Q+ + + + +Q+QQ +
Sbjct: 5 EQQHQAQQQQQQANSQHHHHHHVHHHHYYGGEHHHHNAQQHAEQQAEQHAQQQQQQQAHQ 64
Query: 174 QERQKTEQERQK 185
Q++QK +Q+ Q+
Sbjct: 65 QQQQKAQQQNQQ 76
>ref|NP_223642.1| putative [Helicobacter pylori J99]
Length = 195
Score = 25.4 bits (54), Expect = 2.6
Identities = 14/67 (20%), Positives = 35/67 (51%), Gaps = 4/67 (5%)
Query: 128 ELEQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTEQERQKTEQERQKTE 187
E ++E +N + ++E+ +K + +N I ++ K E +++ E+E + E
Sbjct: 117 EQKRESGWQNNEDNKENSELEKAFKKDLSFSQSNPIPLD----KKETSKEEKEEELESKE 172
Query: 188 QEKQKTI 194
+E ++T+
Sbjct: 173 KEPKETL 179
>ref|NP_224153.1| putative [Helicobacter pylori J99]
Length = 435
Score = 25.0 bits (53), Expect = 3.4
Identities = 40/181 (22%), Positives = 67/181 (36%), Gaps = 12/181 (6%)
Query: 161 NQIKVEQEQQKTEQERQKTEQERQKTEQEKQKTIKTQKDFIKYVEQNCQENHNQFFIEKG 220
NQI QK + + + E KT Q + K ++TQ + + N+ ++
Sbjct: 186 NQIIKRLNAQKERLKEKLEKLEDPKTLQLEAKELQTQASLLLTYQHLINRRENRVILKDF 245
Query: 221 GIKAGIGIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPRSQRGSKAQELIAYLQKEL--- 277
K + +E + P A N+ K Q +E IA+ + ++
Sbjct: 246 EDKECM---IEIDKSMPLNAFINKKFTLSKKKKQKSQFLYLEEENLKEKIAFKENQINYV 302
Query: 278 ----ESLPYSQKAIAKQVDFYRPSSIAYLELDPRDFNV-TEEWQKENLKIRSKAQAKMLE 332
E K RP + Y L +DF + + QKEN+K+ A+A L
Sbjct: 303 RDAAEESVLEMFMPVKNSKIKRPMN-GYEVLYYKDFKIGLGKNQKENIKLLQDARANDLW 361
Query: 333 M 333
M
Sbjct: 362 M 362
>ref|NP_224083.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 678
Score = 25.0 bits (53), Expect = 3.4
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 180 EQERQKTEQEKQKTIKTQKDFIKYVEQNCQENHNQFFIEKGGIKAGIGI 228
E+ R+K QE + + + I E+N HN+ ++ I A +GI
Sbjct: 201 ERIREKKNQEIEDCLMQLNNNIYDKEKNFLSEHNRVYLVIASIIANLGI 249
>ref|NP_223536.1| CYSTEINYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 465
Score = 25.0 bits (53), Expect = 3.4
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 179 TEQERQKTEQ--EKQKTIKTQKDFIK 202
+E E+Q+ E E++K K QKDF+K
Sbjct: 412 SESEKQEIENKIEERKRAKEQKDFLK 437
>ref|NP_224125.1| N-UTILIZATION SUBSTANCE PROTEIN A [Helicobacter pylori J99]
Length = 395
Score = 24.6 bits (52), Expect = 4.4
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 1 MESVKTGKTNKVGKNTEMANTKANKEAHFK 30
+ES+K G N++ K+ + KA +++HF+
Sbjct: 101 LESMKQGAINRLFKDLQYQLEKALEDSHFE 130
>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN
[Helicobacter pylori J99]
Length = 1167
Score = 24.6 bits (52), Expect = 4.4
Identities = 14/38 (36%), Positives = 21/38 (54%), Gaps = 2/38 (5%)
Query: 78 KAKELD--DKVQDKSKQAEKENQINWWKYSGLTIATSL 113
KA D D++ DK K + K+N +N + S + TSL
Sbjct: 1000 KASHFDNLDQMIDKLKDSTKKNVVNLYVESAKKVPTSL 1037
>ref|NP_223108.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 455
Score = 24.6 bits (52), Expect = 4.4
Identities = 35/203 (17%), Positives = 73/203 (35%), Gaps = 27/203 (13%)
Query: 113 LLLAACSTGDVSEQIELEQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKT 172
+++ ST + ++ Q+ N + + + + +E N Q + Q K
Sbjct: 76 VVMQLSSTVEEMRKLAGVSSNQRNYTFSKNKTLLEKDAPLEDTPLEANKQDALLQAL-KD 134
Query: 173 EQERQKTEQERQKTEQEKQKTIKTQKDFIKYVEQNCQENHNQFFIEKGGIKAGIGIEVEA 232
E +K ER+K E ++++ IK + + + + N F+ EK I
Sbjct: 135 EANHKK---EREKREVKQEEEIKDINAQLSKIRDSLKLIQNMFWDEKNPNSVNI------ 185
Query: 233 ECKTPKPAKTNQTPIQPKHLPNSKQPRSQRGSKAQELIAYLQKELESLPYSQKAIAKQVD 292
P+ + Q G K+ L +Q LE +P + + +
Sbjct: 186 ----------------PQEFAEIYKLAKQSGMKSSHLDEIMQLSLELMPLRMRENSVTIK 229
Query: 293 -FYRPSSIAYLELDPRDFNVTEE 314
++R + P D N+ ++
Sbjct: 230 RYFREVLRKIILCRPEDLNLRQK 252
>ref|NP_222954.1| putative [Helicobacter pylori J99]
Length = 362
Score = 24.6 bits (52), Expect = 4.4
Identities = 9/32 (28%), Positives = 22/32 (68%)
Query: 164 KVEQEQQKTEQERQKTEQERQKTEQEKQKTIK 195
K++++ +K + RQ++E+ + + E+ KQ+ K
Sbjct: 233 KIKEQIEKVQIARQESERVKYEVERSKQEAQK 264
>ref|NP_223721.1| putative [Helicobacter pylori J99]
Length = 223
Score = 24.3 bits (51), Expect = 5.8
Identities = 18/49 (36%), Positives = 27/49 (54%), Gaps = 8/49 (16%)
Query: 48 KIAKKVRGLVKKHPKKSSAALVVLTHIACKKAKELDDKVQDKSKQAEKE 96
K K++R +K+H SA V +++ +KE + KV DK K EKE
Sbjct: 100 KNVKELRNYIKEH---FSAYYVNISY-----SKEHNFKVGDKDKNDEKE 140
>ref|NP_223520.1| putative [Helicobacter pylori J99]
Length = 153
Score = 23.9 bits (50), Expect = 7.5
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 126 QIELEQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTEQERQKTEQERQK 185
Q E+E ++ I + E ++K S ++ +K E Q+K E+E ++ +E Q
Sbjct: 9 QQEIEDTREVLKKIRLELKQVQEILRKKKSVLKG---LKQEICQKKLEKENFRSNKETQN 65
Query: 186 TEQE 189
TE++
Sbjct: 66 TEED 69
>ref|NP_222832.1| PHOSPHOENOLPYRUVATE SYNTHASE [Helicobacter pylori J99]
Length = 812
Score = 23.9 bits (50), Expect = 7.5
Identities = 19/67 (28%), Positives = 31/67 (45%), Gaps = 1/67 (1%)
Query: 129 LEQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQ-QKTEQERQKTEQERQKTE 187
+E EK + + + +E K S Q + E Q QKT++E Q E+ + K
Sbjct: 302 IEIEKHYSKEAKQYRPMDIEWAKDGESGEIFIVQARPETVQSQKTKEENQVFEKFKFKNP 361
Query: 188 QEKQKTI 194
EK++ I
Sbjct: 362 NEKKEII 368
>ref|NP_223759.1| putative [Helicobacter pylori J99]
Length = 267
Score = 23.5 bits (49), Expect = 9.8
Identities = 15/46 (32%), Positives = 20/46 (42%), Gaps = 1/46 (2%)
Query: 4 VKTGKTNKVGKNTEMANTKANKEAHFKQASTITNIIRSIRGIFTKI 49
+ +T + TE A T AN E Q ITNI + T+I
Sbjct: 183 ISNNQTQAITNITE-AKTNANNEISNNQTQAITNINEAKESATTQI 227
>ref|NP_223684.1| METHIONYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 656
Score = 23.5 bits (49), Expect = 9.8
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Query: 155 SNIETNNQIKVEQEQQKTEQERQKTEQERQKTEQEKQKTIKTQKDFIKYVEQNCQENHNQ 214
S IE +I+ ++ +K E+ + ++ +K +EK+K TQ+++I E+ +
Sbjct: 507 SKIEKIEKIEKIEKIEKIEKGEEALAEKAEK--KEKEKAPPTQENYISI------EDFKK 558
Query: 215 FFIEKGGIKAGIGIE 229
I+ G IK IE
Sbjct: 559 VEIKVGLIKEAQRIE 573
>ref|NP_223569.1| putative IRON-REGULATED OUTER MEMBRANE PROTEIN [Helicobacter pylori
J99]
Length = 815
Score = 23.5 bits (49), Expect = 9.8
Identities = 12/34 (35%), Positives = 17/34 (49%)
Query: 173 EQERQKTEQERQKTEQEKQKTIKTQKDFIKYVEQ 206
E E ++ E+E +KTE+ K K Q K Q
Sbjct: 23 ELEAKEEEKEEKKTERNKDKEKNAQHTLGKVTTQ 56
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.307 0.123 0.326
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 379,180
Number of Sequences: 1491
Number of extensions: 17154
Number of successful extensions: 286
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 76
Number of HSP's gapped (non-prelim): 119
length of query: 385
length of database: 494,079
effective HSP length: 79
effective length of query: 306
effective length of database: 376,290
effective search space: 115144740
effective search space used: 115144740
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 49 (23.5 bits)