BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645802|ref|NP_207979.1| hypothetical protein
[Helicobacter pylori 26695]
(269 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222831.1| putative [Helicobacter pylori J99] 395 e-112
ref|NP_223830.1| putative [Helicobacter pylori J99] 273 3e-75
ref|NP_223025.1| putative [Helicobacter pylori J99] 37 5e-04
ref|NP_224062.1| putative [Helicobacter pylori J99] 35 0.002
ref|NP_222962.1| putative [Helicobacter pylori J99] 34 0.004
ref|NP_223610.1| putative [Helicobacter pylori J99] 30 0.067
ref|NP_223477.1| putative [Helicobacter pylori J99] 28 0.19
ref|NP_223773.1| putative [Helicobacter pylori J99] 28 0.25
ref|NP_222774.1| putative [Helicobacter pylori J99] 28 0.25
ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter py... 28 0.33
ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATE... 28 0.33
ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99] 28 0.33
ref|NP_223787.1| putative [Helicobacter pylori J99] 27 0.43
ref|NP_223520.1| putative [Helicobacter pylori J99] 26 0.97
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 26 0.97
ref|NP_223159.1| putative [Helicobacter pylori J99] 26 1.3
ref|NP_223950.1| 50S RIBOSOMAL PROTEIN L16 [Helicobacter py... 25 1.6
ref|NP_223515.1| putative [Helicobacter pylori J99] 25 1.6
ref|NP_223421.1| putative [Helicobacter pylori J99] 25 1.6
ref|NP_223247.1| putative SIDEROPHORE-MEDIATED IRON TRANSPO... 25 1.6
ref|NP_223189.1| cag island protein [Helicobacter pylori J99] 25 1.6
ref|NP_222757.1| DNA transformation compentancy [Helicobact... 25 1.6
ref|NP_222954.1| putative [Helicobacter pylori J99] 25 2.2
ref|NP_222912.1| putative [Helicobacter pylori J99] 25 2.2
ref|NP_222772.1| putative [Helicobacter pylori J99] 25 2.2
ref|NP_223617.1| putative [Helicobacter pylori J99] 25 2.8
ref|NP_223781.1| ATP synthase F0, subunit b [Helicobacter p... 24 3.7
ref|NP_223603.1| putative [Helicobacter pylori J99] 24 3.7
ref|NP_223195.1| cag island protein [Helicobacter pylori J99] 24 3.7
ref|NP_224131.1| putative [Helicobacter pylori J99] 24 4.8
ref|NP_223656.1| putative [Helicobacter pylori J99] 24 4.8
ref|NP_223536.1| CYSTEINYL-TRNA SYNTHETASE [Helicobacter py... 24 4.8
ref|NP_223176.1| putative [Helicobacter pylori J99] 23 6.3
ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEI... 23 8.2
ref|NP_223965.1| putative [Helicobacter pylori J99] 23 8.2
ref|NP_223790.1| putative [Helicobacter pylori J99] 23 8.2
ref|NP_223721.1| putative [Helicobacter pylori J99] 23 8.2
ref|NP_223706.1| histidine kinase [Helicobacter pylori J99] 23 8.2
ref|NP_223326.1| CHORISMATE SYNTHASE [Helicobacter pylori J99] 23 8.2
ref|NP_223039.1| putative [Helicobacter pylori J99] 23 8.2
>ref|NP_222831.1| putative [Helicobacter pylori J99]
Length = 412
Score = 395 bits (1015), Expect = e-112
Identities = 214/317 (67%), Positives = 229/317 (71%), Gaps = 67/317 (21%)
Query: 2 KRVRELVKKHPEKSSVALVVLTHAACKKAKELDDKVQDKSKQAEKENQINWWKYSGLTIA 61
K+VRELVKKHP+KSSVALVVLTH ACK+AKELDDKVQDKSKQAEKENQINWWKYSGLTIA
Sbjct: 51 KKVRELVKKHPKKSSVALVVLTHIACKRAKELDDKVQDKSKQAEKENQINWWKYSGLTIA 110
Query: 62 TSLLLAACSVGDIDKQIE--------------LEQEKKEAENARDRANKSGIELEQEKQK 107
SLLLAACS GDIDKQIE LEQE+++ E R + NKS IELEQE+QK
Sbjct: 111 ASLLLAACSTGDIDKQIELEQEKKEANKSGIKLEQERQKTEQERQKTNKSEIELEQERQK 170
Query: 108 T-------------------------------------------------IKEQKDLVKK 118
T IKEQKD +K+
Sbjct: 171 TNKSGIELANSQIKAEQERQKTEQEKQKANKSEIELEQQKQKTINTQRDLIKEQKDFIKE 230
Query: 119 AEQNCQENHGQFFMKKL----GIKGGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPH 174
EQNCQE HGQ F+KK GI GIAIE+EAECKTPKPAKTNQTPIQPKHLPNSKQP
Sbjct: 231 TEQNCQEKHGQLFIKKARIKTGITTGIAIEIEAECKTPKPAKTNQTPIQPKHLPNSKQPR 290
Query: 175 SQRGSKAQELIAYLQKELESLPYSQKAIAKQVNFYRPSSVAYLELDPRDFKVTEEWQKEN 234
SQRGSKAQELIAYLQKELESLPYSQKAIAKQV+FY+PSS+AYLELDPRDFKVTEEWQKEN
Sbjct: 291 SQRGSKAQELIAYLQKELESLPYSQKAIAKQVDFYKPSSIAYLELDPRDFKVTEEWQKEN 350
Query: 235 LKIRSKAQAKMLGNEKP 251
LKIRSKAQAKML P
Sbjct: 351 LKIRSKAQAKMLEMRNP 367
>ref|NP_223830.1| putative [Helicobacter pylori J99]
Length = 383
Score = 273 bits (699), Expect = 3e-75
Identities = 137/170 (80%), Positives = 146/170 (85%), Gaps = 4/170 (2%)
Query: 81 EQEKKEAENARD----RANKSGIELEQEKQKTIKEQKDLVKKAEQNCQENHGQFFMKKLG 136
EQEK++ N + + + EQEKQKT QKDLV KAEQNCQENH QFF+KKLG
Sbjct: 160 EQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDLVNKAEQNCQENHNQFFIKKLG 219
Query: 137 IKGGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPHSQRGSKAQELIAYLQKELESLP 196
IK GIAIE+EAECKTPKP KTNQTPIQPKHLPNSKQPHSQRGSKAQELIAYLQKELESLP
Sbjct: 220 IKAGIAIEIEAECKTPKPTKTNQTPIQPKHLPNSKQPHSQRGSKAQELIAYLQKELESLP 279
Query: 197 YSQKAIAKQVNFYRPSSVAYLELDPRDFKVTEEWQKENLKIRSKAQAKML 246
YSQKAIAKQV+FYRPSS+AYLELDPRDF TEEWQKENLKIRSKAQAKML
Sbjct: 280 YSQKAIAKQVDFYRPSSIAYLELDPRDFNATEEWQKENLKIRSKAQAKML 329
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 37.0 bits (84), Expect = 5e-04
Identities = 44/197 (22%), Positives = 88/197 (44%), Gaps = 25/197 (12%)
Query: 75 DKQIELEQEKKEAENARDRANKSGIELEQEKQKTIKEQKDLVK-KAEQNCQEN-HGQFFM 132
++Q+ ++E E ++ A E+ K++ +KE ++ VK K +Q EN +
Sbjct: 158 EEQLLPTLNEQEGETPKEEAQ------EEVKKEEVKEMQEEVKEKQKQEVAENPQDEEKP 211
Query: 133 KKLGIKGGIA----------IEVEAECKTPKPAKTNQTPI--QPKHLPNSKQPHSQRGSK 180
K +G + +E + E +TPK Q PI + + + KQ +Q
Sbjct: 212 KDDETQGSVEPPKDEEVSKELETQEELETPKEETQEQEPIKEETQEIKEEKQEKTQDSPS 271
Query: 181 AQELIAY--LQKELESLPYSQKAIAKQVNFYRPSSVAYLELDPRDFKVTEEWQKENLKIR 238
AQEL A L KE++ Q+ K+ + ++ +++ ++ ++ +E +E ++
Sbjct: 272 AQELEAMQELVKEIQENSNDQEN-KKETQETQENTETPQDIETQELEIPKE--EETQEVA 328
Query: 239 SKAQAKMLGNEKPTSPP 255
K Q + L E+ P
Sbjct: 329 EKTQVQGLEKEEIAETP 345
Score = 24.6 bits (52), Expect = 2.8
Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 6/121 (4%)
Query: 76 KQIELEQEK-KEAENARDRANKSGIELEQEKQKTIKEQKDLVKKAEQNCQENHGQFFMKK 134
+++E + EK +E E +D + + + Q+K+ +E ++ ++ ++ E K
Sbjct: 359 QELEAQDEKLQENETPKDESMQESAQNLQDKETPQEETQEDHYESIEDIPE---PVMAKA 415
Query: 135 LGIKGGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPHSQRGSKAQELIAYLQKELES 194
+G + + EA K P +TP + ++ S + S EL LQ L+S
Sbjct: 416 MGEE--LPFLNEAVAKIPNNENDTETPKESDIKAPQEKEESDKTSSPLELRLNLQDLLKS 473
Query: 195 L 195
L
Sbjct: 474 L 474
>ref|NP_224062.1| putative [Helicobacter pylori J99]
Length = 258
Score = 35.0 bits (79), Expect = 0.002
Identities = 39/165 (23%), Positives = 70/165 (41%), Gaps = 26/165 (15%)
Query: 59 TIATSLLLAACSVGDIDKQIELEQEKKEAENARDRANKSGIELEQEKQKTIKEQKDLVKK 118
T+ +L+ A+ ++ ++ E + ++ + K I L K+ + +++ VK+
Sbjct: 11 TLEEALIQASIALNCPIINLQYEVIQMPSKGFLNIGKKEAIILVGVKESVKEVKEESVKE 70
Query: 119 AEQNCQENHGQFFMKKLGIKGGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPHSQRG 178
QN +E + LGIK + E TPKP K +TP + H G
Sbjct: 71 IHQNAEEK------QSLGIK-----TPQEEIITPKPPK--KTPKEESH----------NG 107
Query: 179 SKAQELIAYLQKELESLPYSQKAIAKQVNFYRPSSVAYLELDPRD 223
K E+ L+ LPY + +V+ Y P V +++D D
Sbjct: 108 DKLHEIKQELKDLFSHLPYKINKV--EVSLYEP-GVLLIDIDGED 149
Score = 23.5 bits (49), Expect = 6.3
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 58 LTIATSLLLAACSVGDIDKQIELEQEKKEAENARDRANKSGIELEQEKQKTIKEQKDLVK 117
L I + V + K+++ E K+ +NA ++ + GI+ QE+ T K K K
Sbjct: 43 LNIGKKEAIILVGVKESVKEVKEESVKEIHQNAEEKQSL-GIKTPQEEIITPKPPKKTPK 101
Query: 118 KAEQNCQENH 127
+ N + H
Sbjct: 102 EESHNGDKLH 111
>ref|NP_222962.1| putative [Helicobacter pylori J99]
Length = 222
Score = 34.3 bits (77), Expect = 0.004
Identities = 44/197 (22%), Positives = 87/197 (43%), Gaps = 22/197 (11%)
Query: 83 EKKEAENARDRANKSGIE-----LEQEKQKTIKEQKDLVKKAEQNCQENHGQFFMKKLGI 137
E K+AE D S E L+ E + + E+ DL+ K E+ E K+
Sbjct: 31 ESKKAELKEDLRQLSEKEQSLRILQTENARLLDEKSDLLNKKEKEIDEKLKNLAAKEEAF 90
Query: 138 KGGIAIEVEAECKTPKPAKTNQTPIQP-KHLPNSK--QPHSQRGSKAQELIAYLQKELES 194
K ++ E + + + N+ ++ K +SK + +S+ LI LE+
Sbjct: 91 K---TLQTEEKKRLKNLIEENEGILREIKQAKDSKIGETYSKMKDSKSALI------LEN 141
Query: 195 LPYSQKAIAKQVNFYRPSSVAYL--ELDPRDFK-VTEEWQKENLKIRSKAQAKMLGNEKP 251
LP +Q A+ + + +P + + ++DP+ +TE WQK + + +++ + P
Sbjct: 142 LP-TQNAL-EILMALKPQELGKILAKMDPKKAAALTELWQKPPKENKENKESQKTTDPTP 199
Query: 252 TSPPFNLSKPFVRSKNI 268
+PP +P ++ N+
Sbjct: 200 PTPPTPPKEPTLKDPNV 216
>ref|NP_223610.1| putative [Helicobacter pylori J99]
Length = 267
Score = 30.0 bits (66), Expect = 0.067
Identities = 40/199 (20%), Positives = 87/199 (43%), Gaps = 37/199 (18%)
Query: 71 VGDIDKQIE----LEQEKKE----AENARDRANKSGIELEQEK----------QKTIKEQ 112
+ +DK+I+ L +EK++ A N ++ NK+ + LE+EK ++T+++
Sbjct: 11 ISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDT 70
Query: 113 KDLVKKAEQNCQENHGQFFMKKLGIKGGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQ 172
+ ++ E + ++ L I+ IA E ++NQ + ++L N +
Sbjct: 71 NAKIASIQKKMSEIKSERELRSLNIEEDIAKE-----------RSNQANREIENLQNEIK 119
Query: 173 PHSQRGSKAQELIAYLQK---ELESLPYSQKAIAKQVN--FYRPSSVAYLELDPRDFKVT 227
S++ ++ + L+K ELE+L ++ K+ ++ + +P+ +
Sbjct: 120 HKSEKQEVLKKEMLELEKLALELENLVENEVKNIKETQQIIFKKKEELVEKTEPKIYSFY 179
Query: 228 E---EWQKENLKIRSKAQA 243
E W K + K QA
Sbjct: 180 ERIRRWAKNTSIVTIKKQA 198
>ref|NP_223477.1| putative [Helicobacter pylori J99]
Length = 153
Score = 28.5 bits (62), Expect = 0.19
Identities = 15/52 (28%), Positives = 26/52 (49%)
Query: 181 AQELIAYLQKELESLPYSQKAIAKQVNFYRPSSVAYLELDPRDFKVTEEWQK 232
A E++ Y+ K+ I KQ FYRPS++ +D ++ E ++K
Sbjct: 88 ALEILGYVPKDSLEKANFYAPIKKQAQFYRPSALGLFHNPIKDARLHECFEK 139
>ref|NP_223773.1| putative [Helicobacter pylori J99]
Length = 263
Score = 28.1 bits (61), Expect = 0.25
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 10/74 (13%)
Query: 70 SVGDIDKQIELEQEKKEAENARDRANKSGIELEQEKQKTIKEQKDLVKKAE-----QNCQ 124
S+ DI + QEK + +D EQE+Q+ ++EQ+ L + E + Q
Sbjct: 89 SLEDIFSSLNDFQEKTDKNAQKDEQKN-----EQEEQRRLREQQRLKQNQENQEMLKGLQ 143
Query: 125 ENHGQFFMKKLGIK 138
+N QF K +K
Sbjct: 144 QNLNQFTQKLESVK 157
>ref|NP_222774.1| putative [Helicobacter pylori J99]
Length = 327
Score = 28.1 bits (61), Expect = 0.25
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 35 DKVQDKSKQAEKENQINWWKYSGLTIATSLLLAACSVGDIDK-QIELEQEKKEAEN---- 89
DK+ ++ + EN+ K SGL + L + +K +++ E++ EN
Sbjct: 65 DKLTKENTELFAENESLSVKISGLEHSNDQLWQNNNKLTKEKAELKTEKDILAKENTRLL 124
Query: 90 -ARDRANKSGIELEQEKQKTIKEQKDLVKKAEQNCQEN 126
ARDR + EL EK++ +E +L K + +EN
Sbjct: 125 AARDRLTEEKRELTTEKERLKRENTELTHKITELTKEN 162
Score = 24.6 bits (52), Expect = 2.8
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 80 LEQEKKEAENARDRANKSGIELEQEKQKTIKEQKDLVKKAEQNCQENHGQ 129
LEQE+ ++A K LE+E Q+ + K L + A+++ + + Q
Sbjct: 186 LEQERARLQDAHGFLEKRCTNLEKENQRLTDKLKQL-ESAQKSLENTNNQ 234
>ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter pylori J99]
Length = 831
Score = 27.7 bits (60), Expect = 0.33
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 99 IELEQEKQKTIKEQKDLVKKAEQNCQENHGQFFMKK 134
I++ E+ KT K QK++ K Q ++ + ++F+K+
Sbjct: 195 IDIVIEETKTQKLQKEIKSKVHQKMEQTNKEYFLKE 230
>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN
[Helicobacter pylori J99]
Length = 1167
Score = 27.7 bits (60), Expect = 0.33
Identities = 33/139 (23%), Positives = 63/139 (44%), Gaps = 14/139 (10%)
Query: 73 DIDKQIELEQEKKEAENARDRANKSGIELEQEKQKTIKEQKD----LVKKAEQNCQENHG 128
D++K ++ ++E+ E + A++ +KSG + + E + QKD L+ K E N
Sbjct: 617 DLEKSLK-KRERLEKDVAKNLESKSGNKNKMEAKSQANSQKDEIFALINK-EANRDARAI 674
Query: 129 QFFMKKLGIKGGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPHSQRGSKAQELIAYL 188
+ GIK ++ ++E K K K K ++ SKA+E + L
Sbjct: 675 AYAQNLKGIKRELSDKLENINKDLKDFS--------KSFDEFKNGKNKDFSKAEETLKAL 726
Query: 189 QKELESLPYSQKAIAKQVN 207
+ ++ L + + I+K N
Sbjct: 727 KGSVKDLGINPEWISKVEN 745
Score = 24.6 bits (52), Expect = 2.8
Identities = 14/38 (36%), Positives = 21/38 (54%), Gaps = 2/38 (5%)
Query: 29 KAKELD--DKVQDKSKQAEKENQINWWKYSGLTIATSL 64
KA D D++ DK K + K+N +N + S + TSL
Sbjct: 1000 KASHFDNLDQMIDKLKDSTKKNVVNLYVESAKKVPTSL 1037
>ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99]
Length = 856
Score = 27.7 bits (60), Expect = 0.33
Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 24/176 (13%)
Query: 80 LEQEKKEAENARDRANKSGIELEQEKQKTIKEQKDL-VKKAEQNCQ-ENHGQFFMKKLGI 137
LE EK+ E +N + Q+ +KE DL +K + Q EN + F + +
Sbjct: 419 LEMEKQALEMENKESN------HKRMQEILKELSDLKEEKIQLEAQFENEKEVFKEISRL 472
Query: 138 KGGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPHSQRGSKAQELIAYLQKELESLPY 197
K +E+E K + K N Q + SK P ++ K LQ + E++
Sbjct: 473 K----MEMEGLKKEAERFKRNGDYQQAAEIEYSKIPEKEKKEKE------LQHKWETM-- 520
Query: 198 SQKAIAKQVNFYRPSSVAYLELDPRDFKVTEEWQKEN---LKIRSKAQAKMLGNEK 250
Q+ A N +++A + V + Q E L I S+ Q +++G EK
Sbjct: 521 -QQNGALLQNALTENNIAEIVSQWTHIPVQKMLQSEKNRVLNIESELQKRVVGQEK 575
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 27.3 bits (59), Expect = 0.43
Identities = 21/78 (26%), Positives = 40/78 (50%), Gaps = 9/78 (11%)
Query: 76 KQIELEQEKKEAENARDRANKSGIELEQEKQKTIKEQKDLVKKAEQNC-QENHGQF---- 130
++IE ++E EN + N++ +++ +K++ KE+KD +N ++N +F
Sbjct: 121 EKIESKKESINKENEKKIKNEASLQVLTQKKE--KEEKDFTDSCWKNLYKKNEEEFKEIL 178
Query: 131 --FMKKLGIKGGIAIEVE 146
F +K KG I E E
Sbjct: 179 EGFKRKEKFKGKILKEFE 196
>ref|NP_223520.1| putative [Helicobacter pylori J99]
Length = 153
Score = 26.2 bits (56), Expect = 0.97
Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 77 QIELEQEKKEAENARDRANKSGIELEQEKQKTIKEQKDLVKKAEQN-CQE 125
Q EL ++E E+ R+ K +EL+Q Q+ ++++K ++K +Q CQ+
Sbjct: 2 QDELNAYQQEIEDTREVLKKIRLELKQ-VQEILRKKKSVLKGLKQEICQK 50
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 26.2 bits (56), Expect = 0.97
Identities = 27/127 (21%), Positives = 54/127 (42%), Gaps = 26/127 (20%)
Query: 79 ELEQEKKEAENARDRANKSGIELEQEKQKTIKEQKDLVKKAEQNCQENHGQFFMKKLGIK 138
EL + +KE +N ++A G+EL+ + T ++ L K I
Sbjct: 13 ELGKTQKELKNVIEQAKDIGLELKTNFKMTPEQAGKLYKY------------------IV 54
Query: 139 GGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPHSQRGSKAQELIAYLQKELESLPYS 198
GI +++A T P + N+ + P +P +++ SK + ++E ++ P
Sbjct: 55 DGIKEQIQANQPTKNPKQDNKDDLNTAATP---KPLAKKASKTPK-----KEETKAQPKP 106
Query: 199 QKAIAKQ 205
+K K+
Sbjct: 107 KKTKEKK 113
>ref|NP_223159.1| putative [Helicobacter pylori J99]
Length = 181
Score = 25.8 bits (55), Expect = 1.3
Identities = 31/134 (23%), Positives = 52/134 (38%), Gaps = 23/134 (17%)
Query: 20 VVLTHAACKKAKELDDKVQDKSKQAEKENQINWWKYSGLTIATSLLLAACSVGDIDKQIE 79
V+L+ K A E+D ++ N I W +G ++ T + + + +
Sbjct: 57 VLLSLDFFKNANEIDSSLR---------NSIEWLSNAGESLKTKMKEYERFFSEFNTSMH 107
Query: 80 L-EQEKKEAENARDRANKSGIE-------------LEQEKQKTIKEQKDLVKKAEQNCQE 125
EQE NA KS I+ LEQE QK++K ++ QN +
Sbjct: 108 ANEQEVTATLNANTENIKSEIKKLENQLIEETRMLLEQETQKSVKAYNAMMGHQPQNSLK 167
Query: 126 NHGQFFMKKLGIKG 139
+ + F L +G
Sbjct: 168 HGLKNFNNPLSKEG 181
>ref|NP_223950.1| 50S RIBOSOMAL PROTEIN L16 [Helicobacter pylori J99]
Length = 141
Score = 25.4 bits (54), Expect = 1.6
Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Query: 64 LLLAACSVGDIDKQIELEQEKKEAENARDRANKSGIELEQEKQKTIKEQKDLVKKAEQNC 123
+ + A G ID + ++E + RA K I + +K T K + + K + +
Sbjct: 32 IAIKAIEHGRIDSR-QIESARVAMTRHIKRAGKVWIRVFPDKPLTAKPLETRMGKGKGSV 90
Query: 124 QE-----NHGQFFMKKLGIKGGIAIEVEAECKTPKPAKT 157
++ G+ + LGI+ G+A E A ++ P KT
Sbjct: 91 EKWVMNIKPGRIVYEMLGIEEGLAREALALSQSKLPFKT 129
>ref|NP_223515.1| putative [Helicobacter pylori J99]
Length = 541
Score = 25.4 bits (54), Expect = 1.6
Identities = 30/130 (23%), Positives = 46/130 (35%), Gaps = 3/130 (2%)
Query: 106 QKTIKEQKDLVKKAEQNCQENHGQFFMKKLGIKGGIAIEVEAECKTPKPAKTNQTPIQPK 165
QK K + + +EN K+ + E E + + P+P K IQ
Sbjct: 405 QKGEKGNAPIYLQERHKAKENKQPLEENKVKPRNSGFEEEEVKTRRPEPTKDQNNAIQQG 464
Query: 166 HLPNSKQ---PHSQRGSKAQELIAYLQKELESLPYSQKAIAKQVNFYRPSSVAYLELDPR 222
N++ P S+ + +E KE + +K AK R E R
Sbjct: 465 ETKNNESKNTPISKENAAKKEAPKPSSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQER 524
Query: 223 DFKVTEEWQK 232
D K EE +K
Sbjct: 525 DEKELEERRK 534
>ref|NP_223421.1| putative [Helicobacter pylori J99]
Length = 286
Score = 25.4 bits (54), Expect = 1.6
Identities = 18/71 (25%), Positives = 35/71 (48%), Gaps = 4/71 (5%)
Query: 73 DIDKQIELEQEKKEAENARDRANKSGIELEQEKQKTIKEQKDLVKKAEQNCQENHGQFFM 132
DI + + L ++ +A D + + E QK+I E +++KK ++ +E + M
Sbjct: 51 DIGQTLSLIYRHEDLIDASDLPREQKKAVHAELQKSIDENLEVLKKNHKHLKEKN----M 106
Query: 133 KKLGIKGGIAI 143
I GG+A+
Sbjct: 107 PLPFILGGLAL 117
>ref|NP_223247.1| putative SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEIN [Helicobacter
pylori J99]
Length = 317
Score = 25.4 bits (54), Expect = 1.6
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 76 KQIELEQEKKEAENARDRANKSGIELEQEKQKTIKEQKDLVKKAEQN 122
K++E +EKK E ++ K +E + E QK I+E+K + K+ + N
Sbjct: 136 KKVEKVEEKKVVEEKKEE--KKVVEQKVE-QKKIEEKKPVKKEFDPN 179
>ref|NP_223189.1| cag island protein [Helicobacter pylori J99]
Length = 481
Score = 25.4 bits (54), Expect = 1.6
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 16/86 (18%)
Query: 88 ENARDR------ANKSGIELEQEKQKTI--KEQKDLVKKAEQNCQENHGQFFMKKLGIKG 139
EN++++ AN I E+E++K + +++K + A+ ++ Q +K
Sbjct: 279 ENSKEKLIEELIANSQLIANEEEREKKLLAEKEKQETELAKYKLKDLENQKKLK------ 332
Query: 140 GIAIEVEAECKTPKPAKTNQTPIQPK 165
A+E E + K K + + PI PK
Sbjct: 333 --ALEAELKKKNTKKPRVVEVPIPPK 356
>ref|NP_222757.1| DNA transformation compentancy [Helicobacter pylori J99]
Length = 328
Score = 25.4 bits (54), Expect = 1.6
Identities = 10/36 (27%), Positives = 24/36 (65%)
Query: 81 EQEKKEAENARDRANKSGIELEQEKQKTIKEQKDLV 116
E ++ +ENA A K+ L++EK++T +++++ +
Sbjct: 172 ENQENMSENAPKDAQKNNKPLKEEKEETKEKEEETI 207
>ref|NP_222954.1| putative [Helicobacter pylori J99]
Length = 362
Score = 25.0 bits (53), Expect = 2.2
Identities = 18/87 (20%), Positives = 43/87 (48%), Gaps = 8/87 (9%)
Query: 62 TSLLLAACSVGDIDKQIELEQEKKEAENARDRANKSGIELEQEKQKTIKEQKDLVKKAEQ 121
T + L++ + +I +++++ ++ + AR + + E+E+ KQ+ K+ +A+
Sbjct: 216 TPVELSSIQLREIVLPAKIKEQIEKVQIARQESERVKYEVERSKQEAQKQAALAKGEADA 275
Query: 122 NCQENHGQFFMKKLGIKGGIAIEVEAE 148
N +K G+ I IE +A+
Sbjct: 276 N--------RIKAQGVADAIVIEAKAK 294
>ref|NP_222912.1| putative [Helicobacter pylori J99]
Length = 916
Score = 25.0 bits (53), Expect = 2.2
Identities = 17/54 (31%), Positives = 27/54 (49%), Gaps = 5/54 (9%)
Query: 75 DKQIELEQEKKEAENARDRANKSGIELEQEKQKTIKEQKDL--VKKAEQNCQEN 126
DK +E+ + E+ N + K E++QE K IK+ KD ++K E N
Sbjct: 467 DKDLEIYFDSHESFNI---SKKYLQEIDQESLKKIKQSKDFFSIQKIESKHDNN 517
>ref|NP_222772.1| putative [Helicobacter pylori J99]
Length = 220
Score = 25.0 bits (53), Expect = 2.2
Identities = 10/51 (19%), Positives = 29/51 (56%)
Query: 76 KQIELEQEKKEAENARDRANKSGIELEQEKQKTIKEQKDLVKKAEQNCQEN 126
++ EL+++ E +N++ + +EK+ K++++L K+ + ++N
Sbjct: 66 EKTELQKQVNELKNSKQVLENEKADWLREKENLTKDRENLTKEKTELTEKN 116
>ref|NP_223617.1| putative [Helicobacter pylori J99]
Length = 500
Score = 24.6 bits (52), Expect = 2.8
Identities = 26/139 (18%), Positives = 59/139 (41%), Gaps = 17/139 (12%)
Query: 79 ELEQEKKEAENARDRANKSGIELEQEKQKTIKEQKDLVK----------KAEQNCQENHG 128
ELE E ++ E +R + ++ ++EKQ K+ ++ K+++ ++
Sbjct: 116 ELENEHEKYEREFNRIVEEEVKKQKEKQSLSNRAKEGIRNVGNKMLGRNKSDEEIEKRAE 175
Query: 129 QFFMKKLGIKGGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPHSQRGSKAQELIAYL 188
+ +L + + K K N + P+ NS Q +Q+ L+ ++
Sbjct: 176 RIAKNELEKDTKLVSSHDQYEKIKKSGSLNTKNLDPRIQANSLQELNQK------LLQFV 229
Query: 189 QKELESLPYSQKAIAKQVN 207
+ + +PY+ KA+ +N
Sbjct: 230 GADGKYMPYT-KAVRISLN 247
>ref|NP_223781.1| ATP synthase F0, subunit b [Helicobacter pylori J99]
Length = 171
Score = 24.3 bits (51), Expect = 3.7
Identities = 14/43 (32%), Positives = 26/43 (59%), Gaps = 1/43 (2%)
Query: 79 ELEQEKKEAENARDRANKSGIELEQEKQ-KTIKEQKDLVKKAE 120
ELEQ K++AE ANK + Q+ + +T + ++L+K ++
Sbjct: 86 ELEQAKEKAELIISDANKEAYTITQKYELQTKMDVENLIKNSK 128
>ref|NP_223603.1| putative [Helicobacter pylori J99]
Length = 204
Score = 24.3 bits (51), Expect = 3.7
Identities = 14/27 (51%), Positives = 18/27 (65%), Gaps = 4/27 (14%)
Query: 16 SVALV---VLTHAACKKAKELD-DKVQ 38
SVAL +L H +C KAK LD +K+Q
Sbjct: 151 SVALAQGFILAHPSCLKAKSLDLEKIQ 177
>ref|NP_223195.1| cag island protein [Helicobacter pylori J99]
Length = 522
Score = 24.3 bits (51), Expect = 3.7
Identities = 11/45 (24%), Positives = 24/45 (52%), Gaps = 3/45 (6%)
Query: 81 EQEKKEAENARDRANKSGIELEQEKQKTIKEQK---DLVKKAEQN 122
++EK++ E A++RAN + + + K +L+K+ +N
Sbjct: 165 KREKRKEERAKNRANLENLTNAMSNPQNLSNNKNLSELIKQQREN 209
>ref|NP_224131.1| putative [Helicobacter pylori J99]
Length = 115
Score = 23.9 bits (50), Expect = 4.8
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
Query: 58 LTIATSLLLAACSVGDIDKQIELEQEKKEAENARDRANKS--GIELEQEKQKTIKEQKDL 115
++ S+L A Q K N ++ NK IE E+E +K KE DL
Sbjct: 11 ISFVLSVLSACKDEPKKSSQSHQNNTKTTQNNQINQPNKDIKKIEHEEEDEKVTKEVNDL 70
Query: 116 V----KKAEQNCQEN 126
+ K E N +EN
Sbjct: 71 INNENKIDEINNEEN 85
>ref|NP_223656.1| putative [Helicobacter pylori J99]
Length = 337
Score = 23.9 bits (50), Expect = 4.8
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 75 DKQIELEQEKKEAENARDRANKSGIELEQEKQKTIKEQKDLVKKAEQ 121
+K E +E+K + A + NK E ++E K IKE K+ K Q
Sbjct: 81 EKIFECVEEEKHKQ-ALNLINKEDTEDKEELAKKIKEIKEKAKVLRQ 126
>ref|NP_223536.1| CYSTEINYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 465
Score = 23.9 bits (50), Expect = 4.8
Identities = 11/24 (45%), Positives = 16/24 (65%)
Query: 94 ANKSGIELEQEKQKTIKEQKDLVK 117
+ K IE + E++K KEQKD +K
Sbjct: 414 SEKQEIENKIEERKRAKEQKDFLK 437
>ref|NP_223176.1| putative [Helicobacter pylori J99]
Length = 450
Score = 23.5 bits (49), Expect = 6.3
Identities = 24/111 (21%), Positives = 50/111 (44%), Gaps = 13/111 (11%)
Query: 26 ACKKAKELDDKVQDKSKQAEKENQINWWKYSGLTIATSLLLAACSVGDIDKQIELEQEKK 85
A KKA E +++ ++ ++ EKE + K + + A + +I+++ E +
Sbjct: 314 ATKKAMEFEEREKEHDERDEKETE-ERRKALEMDKGNEKVNAKENEREINQESANEPSSE 372
Query: 86 EAENARDRANKSGIE-----------LEQEKQKTIKEQKDLVKKAEQNCQE 125
+D N S ++ +E+++ +KE+K KAEQ +E
Sbjct: 373 NNATLKDTENTSVLKESAAKKEAPKPSSKEEKRRLKEEKKKA-KAEQRARE 422
>ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEIN [Helicobacter pylori
J99]
Length = 280
Score = 23.1 bits (48), Expect = 8.2
Identities = 13/51 (25%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
Query: 79 ELEQEKKEAENARDRANKSGIELEQEKQKTIKEQ---KDLVKKAEQNCQEN 126
++E+ KKE + ++ E+ K+K++ +Q KD+VK+ ++ + N
Sbjct: 124 KVEEPKKEEPKEEPKKEEAK---EEAKEKSVPKQVTTKDIVKEKDKQEESN 171
>ref|NP_223965.1| putative [Helicobacter pylori J99]
Length = 412
Score = 23.1 bits (48), Expect = 8.2
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 13/79 (16%)
Query: 52 WWKYSGLTIATSLLLAACSVGDIDKQIELEQEKK--------EAENARDRANKSGIELEQ 103
++ Y ++A S+ L KQ +L ++KK E ENA+++ ++L +
Sbjct: 284 YYNYDMFSVALSIPLPLYG-----KQAKLVEQKKKESLAFKSEVENAKNKTRHLALKLLK 338
Query: 104 EKQKTIKEQKDLVKKAEQN 122
+ + K + + K +QN
Sbjct: 339 KLETLQKNLESINKIIKQN 357
>ref|NP_223790.1| putative [Helicobacter pylori J99]
Length = 285
Score = 23.1 bits (48), Expect = 8.2
Identities = 28/108 (25%), Positives = 49/108 (44%), Gaps = 24/108 (22%)
Query: 91 RDRANKSGIELEQEKQKTIKEQKDLVKKAEQNCQENHGQFFMKKLGIKGGIAIEVEAECK 150
R ++NK ELE+ K+K KE ++ V K+ NH AI + + K
Sbjct: 95 RIKSNKKE-ELEEYKEKNPKEYEEKVNKSGIIQSFNH--------------AIAQQNQVK 139
Query: 151 TPKPAKTNQTPIQPKHLPNSKQPHSQRGSKAQELIAYL---QKELESL 195
+ + K +P ++ H G +A+ LI +L QK++++L
Sbjct: 140 ----LRVGRVRFMFKDMPKDQRVHG--GLEAEILIPHLELRQKQIDAL 181
>ref|NP_223721.1| putative [Helicobacter pylori J99]
Length = 223
Score = 23.1 bits (48), Expect = 8.2
Identities = 17/47 (36%), Positives = 24/47 (50%), Gaps = 5/47 (10%)
Query: 1 MKRVRELVKKHPEKSSVALVVLTHAACKKAKELDDKVQDKSKQAEKE 47
+K V+EL E S V ++++ KE + KV DK K EKE
Sbjct: 99 LKNVKELRNYIKEHFSAYYVNISYS-----KEHNFKVGDKDKNDEKE 140
>ref|NP_223706.1| histidine kinase [Helicobacter pylori J99]
Length = 815
Score = 23.1 bits (48), Expect = 8.2
Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 31 KELDDKVQDKSKQAEKENQI----NWWKYSGLTIATSLLLAACSVGDIDKQIELEQEKKE 86
KE+ + ++K+K+ K N+ N + L L A S +++ +IE K++
Sbjct: 149 KEVKKENKEKAKEEVKANKTPTTENLTSDNPLADEPDLDYANMSAEEVEAEIERLLNKRQ 208
Query: 87 AENARDRANKSGIELEQEKQK 107
+ RA K + + KQ+
Sbjct: 209 EADKERRAQKKQEDQAKPKQE 229
>ref|NP_223326.1| CHORISMATE SYNTHASE [Helicobacter pylori J99]
Length = 365
Score = 23.1 bits (48), Expect = 8.2
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 14/50 (28%)
Query: 110 KEQKDLVKKAEQNCQENHGQFFMKKLGIKGGIAIEVEAECKTPKPAKTNQ 159
KEQ++ K A QN +NH GG+A+ + A + AKTNQ
Sbjct: 180 KEQEEAQKTAIQNAIKNHDSI--------GGVAL-IRA-----RGAKTNQ 215
>ref|NP_223039.1| putative [Helicobacter pylori J99]
Length = 186
Score = 23.1 bits (48), Expect = 8.2
Identities = 13/43 (30%), Positives = 25/43 (57%), Gaps = 2/43 (4%)
Query: 74 IDKQIELEQEKKEA--ENARDRANKSGIELEQEKQKTIKEQKD 114
I K+ E K+++ EN +D+ + E+ +KQ+ +K +KD
Sbjct: 141 ISKKQEESHHKEDSNDENHKDKLSNITEEMILKKQEELKARKD 183
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.309 0.126 0.351
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 282,066
Number of Sequences: 1491
Number of extensions: 13224
Number of successful extensions: 99
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 55
Number of HSP's gapped (non-prelim): 49
length of query: 269
length of database: 494,079
effective HSP length: 76
effective length of query: 193
effective length of database: 380,763
effective search space: 73487259
effective search space used: 73487259
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 48 (23.1 bits)