BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645806|ref|NP_207983.1| secreted protein involved
in flagellar motility [Helicobacter pylori 26695]
(93 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223834.1| putative motility protein [Helicobacter py... 84 4e-19
ref|NP_223758.1| EXCINUCLEASE ABC SUBUNIT B [Helicobacter p... 26 0.12
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 23 0.80
ref|NP_223211.1| cag island protein [Helicobacter pylori J99] 23 1.4
ref|NP_223938.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobact... 22 1.8
ref|NP_223536.1| CYSTEINYL-TRNA SYNTHETASE [Helicobacter py... 22 1.8
ref|NP_223176.1| putative [Helicobacter pylori J99] 22 1.8
ref|NP_223721.1| putative [Helicobacter pylori J99] 22 2.3
ref|NP_223515.1| putative [Helicobacter pylori J99] 22 3.0
ref|NP_223031.1| NH(3)-DEPENDENT NAD+ SYNTHETASE [Helicobac... 22 3.0
ref|NP_222754.1| putative [Helicobacter pylori J99] 22 3.0
ref|NP_223816.1| AMINO ACID ABC TRANSPORTER, BINDING PROTEI... 21 5.2
ref|NP_223731.1| putative [Helicobacter pylori J99] 21 5.2
ref|NP_223537.1| vacuolating cytotoxin [Helicobacter pylori... 21 5.2
ref|NP_224016.1| BIOTIN SYNTHETASE [Helicobacter pylori J99] 20 6.8
ref|NP_223702.1| putative [Helicobacter pylori J99] 20 6.8
ref|NP_223140.1| OLIGOPEPTIDASE [Helicobacter pylori J99] 20 6.8
ref|NP_223089.1| putative [Helicobacter pylori J99] 20 6.8
ref|NP_223025.1| putative [Helicobacter pylori J99] 20 6.8
ref|NP_223353.1| short-chain fatty acids transporter [Helic... 20 8.9
>ref|NP_223834.1| putative motility protein [Helicobacter pylori J99]
Length = 54
Score = 84.3 bits (207), Expect = 4e-19
Identities = 45/53 (84%), Positives = 48/53 (89%), Gaps = 1/53 (1%)
Query: 1 MKKQILTGVLLSVLAVSSAYAHKDKKDAKKPKFSTELVVAQNDKKDAKKPKFS 53
MKKQILTGVLLSVLAVSSAYAHKDKKDAKKP+ S++L VA DKKDAKKPK S
Sbjct: 1 MKKQILTGVLLSVLAVSSAYAHKDKKDAKKPELSSQL-VAHKDKKDAKKPKNS 52
>ref|NP_223758.1| EXCINUCLEASE ABC SUBUNIT B [Helicobacter pylori J99]
Length = 658
Score = 26.2 bits (56), Expect = 0.12
Identities = 14/36 (38%), Positives = 22/36 (60%), Gaps = 1/36 (2%)
Query: 55 ELVVAQNDKKDAKKPKFSTELVVAQNDKKDAKKPKN 90
E+ +A+ KKD K PK E ++ + DKK ++ KN
Sbjct: 605 EIKIAKALKKD-KMPKSEREKIIKELDKKMRERAKN 639
Score = 23.9 bits (50), Expect = 0.61
Identities = 13/35 (37%), Positives = 21/35 (59%), Gaps = 1/35 (2%)
Query: 36 ELVVAQNDKKDAKKPKFSTELVVAQNDKKDAKKPK 70
E+ +A+ KKD K PK E ++ + DKK ++ K
Sbjct: 605 EIKIAKALKKD-KMPKSEREKIIKELDKKMRERAK 638
Score = 21.2 bits (43), Expect = 4.0
Identities = 11/27 (40%), Positives = 16/27 (58%), Gaps = 1/27 (3%)
Query: 25 KKDAKKPKFSTELVVAQNDKKDAKKPK 51
KKD K PK E ++ + DKK ++ K
Sbjct: 613 KKD-KMPKSEREKIIKELDKKMRERAK 638
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 23.5 bits (49), Expect = 0.80
Identities = 21/64 (32%), Positives = 31/64 (47%), Gaps = 3/64 (4%)
Query: 24 DKKDAKKPKFSTELVVAQNDKKDAKKPKFSTELVVAQNDKKDAKKPKFSTELVVAQNDKK 83
DK+ KKP T+ + DK A+ K +E +A +KK+ K F E +DKK
Sbjct: 1503 DKEKGKKPTAETKAESNKIDKDVAETAKNISE--IALKNKKE-KSGDFVDENGNPIDDKK 1559
Query: 84 DAKK 87
+K
Sbjct: 1560 KEEK 1563
Score = 22.3 bits (46), Expect = 1.8
Identities = 12/42 (28%), Positives = 21/42 (49%)
Query: 42 NDKKDAKKPKFSTELVVAQNDKKDAKKPKFSTELVVAQNDKK 83
+DK+ KKP T+ + DK A+ K +E+ + +K
Sbjct: 1502 DDKEKGKKPTAETKAESNKIDKDVAETAKNISEIALKNKKEK 1543
Score = 21.6 bits (44), Expect = 3.0
Identities = 11/30 (36%), Positives = 16/30 (52%)
Query: 61 NDKKDAKKPKFSTELVVAQNDKKDAKKPKN 90
+DK+ KKP T+ + DK A+ KN
Sbjct: 1502 DDKEKGKKPTAETKAESNKIDKDVAETAKN 1531
>ref|NP_223211.1| cag island protein [Helicobacter pylori J99]
Length = 208
Score = 22.7 bits (47), Expect = 1.4
Identities = 12/28 (42%), Positives = 16/28 (56%)
Query: 9 VLLSVLAVSSAYAHKDKKDAKKPKFSTE 36
VLLS++ SS + D K+AKK E
Sbjct: 18 VLLSLVVFSSYGSANDDKEAKKEALEKE 45
>ref|NP_223938.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobacter pylori J99]
Length = 420
Score = 22.3 bits (46), Expect = 1.8
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 5 ILTGVLLSVLAVSSAYAHKDKKDAKKPKFSTELVVAQNDKK 45
+L G++L VLA A + + + + P VV QN K
Sbjct: 205 MLIGIVLIVLATIFAIIYVELAERRIPISYARKVVMQNQNK 245
>ref|NP_223536.1| CYSTEINYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 465
Score = 22.3 bits (46), Expect = 1.8
Identities = 10/44 (22%), Positives = 20/44 (44%)
Query: 50 PKFSTELVVAQNDKKDAKKPKFSTELVVAQNDKKDAKKPKNSVV 93
P F E++ D + K E +++ ++K + PKN +
Sbjct: 338 PNFKKEILECMQDDLNVSKALSVLESMLSSTNEKLDQNPKNKAL 381
>ref|NP_223176.1| putative [Helicobacter pylori J99]
Length = 450
Score = 22.3 bits (46), Expect = 1.8
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 12 SVLAVSSAYAHKDKKDAKKPKFSTELVVAQNDKKDAKKPKFSTELVVAQNDKKDAKKPKF 71
SVL S+A KK+A KP E + +KK AK + + E + ++ + +
Sbjct: 384 SVLKESAA-----KKEAPKPSSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKEL 438
Query: 72 STELVVAQNDKK 83
+ +KK
Sbjct: 439 EERRKALEMNKK 450
Score = 21.6 bits (44), Expect = 3.0
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 34 STELVVAQNDKKDAKKPKFSTELVVAQNDKKDAKKPKFSTELV--VAQNDKKDAKK 87
+T ++ KK+A KP E + +KK AK + + E ++ ++D K+
Sbjct: 382 NTSVLKESAAKKEAPKPSSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKE 437
>ref|NP_223721.1| putative [Helicobacter pylori J99]
Length = 223
Score = 21.9 bits (45), Expect = 2.3
Identities = 15/47 (31%), Positives = 25/47 (52%), Gaps = 1/47 (2%)
Query: 1 MKKQILTGVLLSVLAVSSAYAH-KDKKDAKKPKFSTELVVAQNDKKD 46
+ K+ L+ +LL L +S+ ++ KDK D T+ NDK+D
Sbjct: 7 VSKKFLSVLLLISLFLSACKSNNKDKLDENLLSSGTQSSKELNDKRD 53
Score = 21.2 bits (43), Expect = 4.0
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 23 KDKKDAKKPKFSTE 36
KDK D K+ K STE
Sbjct: 133 KDKNDEKEIKMSTE 146
Score = 20.8 bits (42), Expect = 5.2
Identities = 9/17 (52%), Positives = 10/17 (57%)
Query: 39 VAQNDKKDAKKPKFSTE 55
V DK D K+ K STE
Sbjct: 130 VGDKDKNDEKEIKMSTE 146
Score = 20.8 bits (42), Expect = 5.2
Identities = 9/17 (52%), Positives = 10/17 (57%)
Query: 58 VAQNDKKDAKKPKFSTE 74
V DK D K+ K STE
Sbjct: 130 VGDKDKNDEKEIKMSTE 146
>ref|NP_223515.1| putative [Helicobacter pylori J99]
Length = 541
Score = 21.6 bits (44), Expect = 3.0
Identities = 13/59 (22%), Positives = 25/59 (42%)
Query: 25 KKDAKKPKFSTELVVAQNDKKDAKKPKFSTELVVAQNDKKDAKKPKFSTELVVAQNDKK 83
KK+A KP E + +KK AK + + E + ++ + + + +KK
Sbjct: 483 KKEAPKPSSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKELEERRKALEMNKK 541
Score = 20.4 bits (41), Expect = 6.8
Identities = 10/24 (41%), Positives = 13/24 (53%)
Query: 63 KKDAKKPKFSTELVVAQNDKKDAK 86
KK+A KP E + +KK AK
Sbjct: 483 KKEAPKPSSKEEKRRLKEEKKKAK 506
>ref|NP_223031.1| NH(3)-DEPENDENT NAD+ SYNTHETASE [Helicobacter pylori J99]
Length = 260
Score = 21.6 bits (44), Expect = 3.0
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 44 KKDAKKPKFSTELVVAQNDKKDAKKP 69
KK KP S +L V Q+D+KD P
Sbjct: 175 KKILNKPP-SADLFVGQSDEKDLGYP 199
Score = 21.6 bits (44), Expect = 3.0
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 63 KKDAKKPKFSTELVVAQNDKKDAKKP 88
KK KP S +L V Q+D+KD P
Sbjct: 175 KKILNKPP-SADLFVGQSDEKDLGYP 199
>ref|NP_222754.1| putative [Helicobacter pylori J99]
Length = 335
Score = 21.6 bits (44), Expect = 3.0
Identities = 12/28 (42%), Positives = 15/28 (52%)
Query: 37 LVVAQNDKKDAKKPKFSTELVVAQNDKK 64
LVVAQ D K P + ++A ND K
Sbjct: 184 LVVAQFDPFFPKNPFLKNDEILAINDYK 211
Score = 21.6 bits (44), Expect = 3.0
Identities = 12/28 (42%), Positives = 15/28 (52%)
Query: 56 LVVAQNDKKDAKKPKFSTELVVAQNDKK 83
LVVAQ D K P + ++A ND K
Sbjct: 184 LVVAQFDPFFPKNPFLKNDEILAINDYK 211
>ref|NP_223816.1| AMINO ACID ABC TRANSPORTER, BINDING PROTEIN PRECURSOR
[Helicobacter pylori J99]
Length = 277
Score = 20.8 bits (42), Expect = 5.2
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 9 VLLSVLAVSSAYAHKDKKDA 28
VL++++ + + +HK+KKDA
Sbjct: 15 VLIALVFNACSDSHKEKKDA 34
>ref|NP_223731.1| putative [Helicobacter pylori J99]
Length = 201
Score = 20.8 bits (42), Expect = 5.2
Identities = 6/15 (40%), Positives = 12/15 (80%)
Query: 13 VLAVSSAYAHKDKKD 27
++ +S +YAH ++KD
Sbjct: 77 LVGISKSYAHNNEKD 91
>ref|NP_223537.1| vacuolating cytotoxin [Helicobacter pylori J99]
Length = 1288
Score = 20.8 bits (42), Expect = 5.2
Identities = 9/24 (37%), Positives = 13/24 (53%)
Query: 68 KPKFSTELVVAQNDKKDAKKPKNS 91
KP +T +NDKK+ + NS
Sbjct: 334 KPNSTTSQSGTKNDKKEISQNNNS 357
>ref|NP_224016.1| BIOTIN SYNTHETASE [Helicobacter pylori J99]
Length = 282
Score = 20.4 bits (41), Expect = 6.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 36 ELVVAQNDKKDAKKPKFSTELVV 58
E+V NDK++AK ++ VV
Sbjct: 229 EVVFKDNDKQEAKLFEYGINAVV 251
Score = 20.4 bits (41), Expect = 6.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 55 ELVVAQNDKKDAKKPKFSTELVV 77
E+V NDK++AK ++ VV
Sbjct: 229 EVVFKDNDKQEAKLFEYGINAVV 251
>ref|NP_223702.1| putative [Helicobacter pylori J99]
Length = 616
Score = 20.4 bits (41), Expect = 6.8
Identities = 14/51 (27%), Positives = 23/51 (44%)
Query: 1 MKKQILTGVLLSVLAVSSAYAHKDKKDAKKPKFSTELVVAQNDKKDAKKPK 51
+KK ++ + L V AH +AKKP L+ Q +K+ + K
Sbjct: 8 LKKHDELKIIDTPLEVDLEIAHLAYIEAKKPNGGKALLFTQPIRKEHNQIK 58
>ref|NP_223140.1| OLIGOPEPTIDASE [Helicobacter pylori J99]
Length = 578
Score = 20.4 bits (41), Expect = 6.8
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 41 QNDKKDAKKPKFSTELVVAQNDKKDAKKPKFSTELVVAQNDKK 83
QN+ K+ KF+ L +N + + +L+ A+N K+
Sbjct: 37 QNNLKNLDAAKFANTLKHYENLSEKISRAMAYAQLLFAKNTKE 79
>ref|NP_223089.1| putative [Helicobacter pylori J99]
Length = 313
Score = 20.4 bits (41), Expect = 6.8
Identities = 13/49 (26%), Positives = 19/49 (38%)
Query: 41 QNDKKDAKKPKFSTELVVAQNDKKDAKKPKFSTELVVAQNDKKDAKKPK 89
+N + D K +L K+ K KF E + K +KK K
Sbjct: 27 ENQQLDEKINNLKRQLTEKGVSPKEMDKDKFEEEYLERTYPKISSKKRK 75
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 20.4 bits (41), Expect = 6.8
Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 29 KKPKFSTELVVAQNDKKDAKKPKFSTELVVAQNDKKDAKKPKFSTELVVAQNDKKDAKKP 88
++P +L+ N+++ + + E V + K+ ++ K + VA+N + D +KP
Sbjct: 153 EEPNNEEQLLPTLNEQEGETPKEEAQEEVKKEEVKEMQEEVKEKQKQEVAENPQ-DEEKP 211
Query: 89 KN 90
K+
Sbjct: 212 KD 213
>ref|NP_223353.1| short-chain fatty acids transporter [Helicobacter pylori J99]
Length = 454
Score = 20.0 bits (40), Expect = 8.9
Identities = 12/36 (33%), Positives = 17/36 (46%)
Query: 58 VAQNDKKDAKKPKFSTELVVAQNDKKDAKKPKNSVV 93
+ + D K K TEL+ Q DK A +NS +
Sbjct: 219 IVEIDSKLLKDEYKETELISHQQDKTIAHFLENSAL 254
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.306 0.122 0.311
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,211
Number of Sequences: 1491
Number of extensions: 4432
Number of successful extensions: 41
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of query: 93
length of database: 494,079
effective HSP length: 69
effective length of query: 24
effective length of database: 391,200
effective search space: 9388800
effective search space used: 9388800
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.7 bits)
S2: 40 (20.0 bits)