BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644750|ref|NP_206920.1| hypothetical protein
[Helicobacter pylori 26695]
(398 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222831.1| putative [Helicobacter pylori J99] 682 0.0
ref|NP_223830.1| putative [Helicobacter pylori J99] 429 e-122
ref|NP_222772.1| putative [Helicobacter pylori J99] 40 8e-05
ref|NP_223610.1| putative [Helicobacter pylori J99] 40 1e-04
ref|NP_223773.1| putative [Helicobacter pylori J99] 37 9e-04
ref|NP_223788.1| putative [Helicobacter pylori J99] 36 0.002
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 36 0.002
ref|NP_223025.1| putative [Helicobacter pylori J99] 36 0.002
ref|NP_223659.1| putative [Helicobacter pylori J99] 35 0.003
ref|NP_223574.1| putative vacuolating cytotoxin (VacA) para... 35 0.003
ref|NP_223625.1| putative [Helicobacter pylori J99] 35 0.003
ref|NP_223645.1| putative [Helicobacter pylori J99] 34 0.008
ref|NP_222774.1| putative [Helicobacter pylori J99] 34 0.008
ref|NP_223176.1| putative [Helicobacter pylori J99] 33 0.013
ref|NP_223761.1| putative [Helicobacter pylori J99] 31 0.049
ref|NP_223781.1| ATP synthase F0, subunit b [Helicobacter p... 30 0.083
ref|NP_223444.1| putative TYPE I RESTRICTION ENZYME (SPECIF... 30 0.083
ref|NP_223787.1| putative [Helicobacter pylori J99] 30 0.11
ref|NP_223889.1| putative [Helicobacter pylori J99] 29 0.24
ref|NP_223195.1| cag island protein [Helicobacter pylori J99] 29 0.24
ref|NP_223706.1| histidine kinase [Helicobacter pylori J99] 28 0.41
ref|NP_223415.1| putative [Helicobacter pylori J99] 28 0.41
ref|NP_223640.1| Component of conjugal plasmid transfer sys... 27 0.70
ref|NP_223189.1| cag island protein [Helicobacter pylori J99] 27 0.92
ref|NP_223796.1| putative SIGNAL RECOGNITION PARTICLE PROTE... 26 1.6
ref|NP_223561.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 26 1.6
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 26 1.6
ref|NP_222816.1| methyl-accepting chemotaxis protein (MCP) ... 26 1.6
ref|NP_223477.1| putative [Helicobacter pylori J99] 26 2.0
ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99] 26 2.0
ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEI... 25 3.5
ref|NP_223180.1| putative [Helicobacter pylori J99] 25 3.5
ref|NP_224125.1| N-UTILIZATION SUBSTANCE PROTEIN A [Helicob... 25 4.6
ref|NP_223759.1| putative [Helicobacter pylori J99] 25 4.6
ref|NP_223643.1| putative [Helicobacter pylori J99] 25 4.6
ref|NP_223617.1| putative [Helicobacter pylori J99] 25 4.6
ref|NP_223515.1| putative [Helicobacter pylori J99] 25 4.6
ref|NP_223639.1| putative [Helicobacter pylori J99] 24 6.0
ref|NP_223560.1| putative [Helicobacter pylori J99] 24 6.0
ref|NP_222894.1| putative [Helicobacter pylori J99] 24 6.0
ref|NP_224210.1| FLAGELLAR BASAL-BODY ROD PROTEIN (DISTAL R... 24 7.8
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 24 7.8
ref|NP_224073.1| putative motility protein [Helicobacter py... 24 7.8
ref|NP_224062.1| putative [Helicobacter pylori J99] 24 7.8
ref|NP_223782.1| ATP synthase B' [Helicobacter pylori J99] 24 7.8
ref|NP_223721.1| putative [Helicobacter pylori J99] 24 7.8
ref|NP_223664.1| putative [Helicobacter pylori J99] 24 7.8
>ref|NP_222831.1| putative [Helicobacter pylori J99]
Length = 412
Score = 682 bits (1761), Expect = 0.0
Identities = 358/416 (86%), Positives = 369/416 (88%), Gaps = 22/416 (5%)
Query: 1 MESVKTGKTNKVGKNTEMANTKANKETHFKQVSAITNIIRSVGGFFTKIAKRVRGLVKKH 60
MESVKT KTNKVGKNTE ANT+A+KETHFKQ SAITN +RS+GG FTKIAK+VR LVKKH
Sbjct: 1 MESVKTVKTNKVGKNTETANTEASKETHFKQASAITNTLRSIGGIFTKIAKKVRELVKKH 60
Query: 61 PKKSSAALVVLTHIACKKAKELDDKVQDKSKQAEKENQINWWKYSGLTIAASLLLAACSA 120
PKKSS ALVVLTHIACK+AKELDDKVQDKSKQAEKENQINWWKYSGLTIAASLLLAACS
Sbjct: 61 PKKSSVALVVLTHIACKRAKELDDKVQDKSKQAEKENQINWWKYSGLTIAASLLLAACST 120
Query: 121 GDTDKQIELEQEKKEA--------------ENARDRANKSGIELEQERQKTNKSGIELAN 166
GD DKQIELEQEKKEA E R + NKS IELEQERQKTNKSGIELAN
Sbjct: 121 GDIDKQIELEQEKKEANKSGIKLEQERQKTEQERQKTNKSEIELEQERQKTNKSGIELAN 180
Query: 167 SQIKAEQERQKTEQEKQKANKSAIELEQQKQKTINTQRDLIKEQKDFIKETEQNCQENHN 226
SQIKAEQERQKTEQEKQKANKS IELEQQKQKTINTQRDLIKEQKDFIKETEQNCQE H
Sbjct: 181 SQIKAEQERQKTEQEKQKANKSEIELEQQKQKTINTQRDLIKEQKDFIKETEQNCQEKHG 240
Query: 227 QFFIK----KLGIKGGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPHSQRGSKAQEF 282
Q FIK K GI GIAIE+EAECKTPKPAKTNQTPIQPKHLPNSKQP SQRGSKAQE
Sbjct: 241 QLFIKKARIKTGITTGIAIEIEAECKTPKPAKTNQTPIQPKHLPNSKQPRSQRGSKAQEL 300
Query: 283 IAYLQKELEFLPYSQKAIAKQVNFYKPSSIAYLELDPRDFKVTEEWQKENLKIRSKAQAK 342
IAYLQKELE LPYSQKAIAKQV+FYKPSSIAYLELDPRDFKVTEEWQKENLKIRSKAQAK
Sbjct: 301 IAYLQKELESLPYSQKAIAKQVDFYKPSSIAYLELDPRDFKVTEEWQKENLKIRSKAQAK 360
Query: 343 MLEMRDLKPDPQAHLPTSQSLLFVQKIFADVNKEIEAVANTEKKAEKAGYGYSKRM 398
MLEMR +PQAHLPTSQSLLFVQKIFAD+NKEIEAVANTEKK EKAGYGYSKRM
Sbjct: 361 MLEMR----NPQAHLPTSQSLLFVQKIFADINKEIEAVANTEKKTEKAGYGYSKRM 412
>ref|NP_223830.1| putative [Helicobacter pylori J99]
Length = 383
Score = 429 bits (1102), Expect = e-122
Identities = 234/375 (62%), Positives = 272/375 (72%), Gaps = 31/375 (8%)
Query: 38 IIRSVGGFFTKIA--KRVRGLVKKHPKKSSAALVVLTHIACKKAKELDDKVQDKSKQAEK 95
+ ++VG IA + ++ +KK KKS C K DD + K
Sbjct: 26 VFKNVGISIMGIAFWEAIKDSIKKQIKKSDWI--------CGNVKTADDYL--------K 69
Query: 96 ENQINWWKYS-GLTIAASLLLAACSAGDTDKQIELEQEKKEAENARDRANKSGIELEQER 154
+ +W+ + G+T ++L+ C A D K+ E+ Q +KEAENARDRANKSGIELEQE
Sbjct: 70 THPNSWFNSAIGVTAITAMLMNVCFADDQSKK-EVAQAQKEAENARDRANKSGIELEQEE 128
Query: 155 QKTNKSGIELANSQIKAEQERQKTEQEKQKANK-----------SAIELEQQKQKTINTQ 203
QKT + + + K EQE+QKTEQEKQK + + I++EQ++QKT +
Sbjct: 129 QKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEK 188
Query: 204 RDLIKEQKDFIKETEQNCQENHNQFFIKKLGIKGGIAIEVEAECKTPKPAKTNQTPIQPK 263
+ QKD + + EQNCQENHNQFFIKKLGIK GIAIE+EAECKTPKP KTNQTPIQPK
Sbjct: 189 QKTNNTQKDLVNKAEQNCQENHNQFFIKKLGIKAGIAIEIEAECKTPKPTKTNQTPIQPK 248
Query: 264 HLPNSKQPHSQRGSKAQEFIAYLQKELEFLPYSQKAIAKQVNFYKPSSIAYLELDPRDFK 323
HLPNSKQPHSQRGSKAQE IAYLQKELE LPYSQKAIAKQV+FY+PSSIAYLELDPRDF
Sbjct: 249 HLPNSKQPHSQRGSKAQELIAYLQKELESLPYSQKAIAKQVDFYRPSSIAYLELDPRDFN 308
Query: 324 VTEEWQKENLKIRSKAQAKMLEMRDLKPDPQAHLPTSQSLLFVQKIFADVNKEIEAVANT 383
TEEWQKENLKIRSKAQAKMLEMR LKPDPQAHL TSQSLL VQKIFADV+KEI+ VANT
Sbjct: 309 ATEEWQKENLKIRSKAQAKMLEMRSLKPDPQAHLSTSQSLLLVQKIFADVSKEIKVVANT 368
Query: 384 EKKAEKAGYGYSKRM 398
EKK EKAGYGYSKRM
Sbjct: 369 EKKVEKAGYGYSKRM 383
>ref|NP_222772.1| putative [Helicobacter pylori J99]
Length = 220
Score = 40.4 bits (93), Expect = 8e-05
Identities = 43/195 (22%), Positives = 84/195 (43%), Gaps = 17/195 (8%)
Query: 122 DTDKQIELEQEKKEAENARDRANKSGIELEQERQKTNKSGIELANSQIKAEQERQKTEQE 181
+ +K + E+E+ E EN A+K L +E+ + K EL NS+ E E+ +E
Sbjct: 37 EENKALTTEKERLERENKNLTADKEN--LTKEKTELQKQVNELKNSKQVLENEKADWLRE 94
Query: 182 KQKANKSAIELEQ------QKQKTINTQRDLIKEQKDFIKETEQNCQENHNQFFIKKLGI 235
K+ K L + +K K + T+++ + +K+ + + + Q+ N+ K +
Sbjct: 95 KENLTKDRENLTKEKTELTEKNKVLTTEKERLATEKENLTKEKTESQKQVNELKNSKQVL 154
Query: 236 KGGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPHSQRGSKAQEFIAYLQKELEFLPY 295
+ A K KT++T + K+ Q + ++ I L E E L
Sbjct: 155 ENEKADLTNENTK----LKTDKTDLTEKN-----QRLTTEKTELNNKITGLATEKERLAA 205
Query: 296 SQKAIAKQVNFYKPS 310
++ + K+ KP+
Sbjct: 206 DKENLTKESRQRKPN 220
Score = 35.4 bits (80), Expect = 0.003
Identities = 34/143 (23%), Positives = 62/143 (42%), Gaps = 10/143 (6%)
Query: 137 ENARDRANKSGIELEQERQKTNKSGIELANSQIKAEQERQKTEQ-----EKQKANKSAIE 191
EN +D + E+ + T + + N + E+ER + E +K+ K E
Sbjct: 11 ENPKDALKSTNFH-EKHTKPTETTELVEENKALTTEKERLERENKNLTADKENLTKEKTE 69
Query: 192 LEQQKQKTINTQRDLIKEQKDFIKETEQNCQENHNQFFIK-KLGIKGGIAIEVEAECKTP 250
L++Q + N+++ L E+ D+++E E ++ N K +L K + + T
Sbjct: 70 LQKQVNELKNSKQVLENEKADWLREKENLTKDRENLTKEKTELTEKNKVLTTEKERLATE 129
Query: 251 KPAKT---NQTPIQPKHLPNSKQ 270
K T ++ Q L NSKQ
Sbjct: 130 KENLTKEKTESQKQVNELKNSKQ 152
>ref|NP_223610.1| putative [Helicobacter pylori J99]
Length = 267
Score = 40.0 bits (92), Expect = 1e-04
Identities = 34/149 (22%), Positives = 73/149 (48%), Gaps = 10/149 (6%)
Query: 77 KKAKELDDKVQDKSKQAEKENQINWWKYSGLTIAASLLLAACSAGDTDKQIELEQEKKEA 136
+K K+LD + DK K I + L + + + DT+ +I Q+K
Sbjct: 27 EKRKDLDKALNDKEA---KNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSE 83
Query: 137 ENARDRANKSGIELEQERQKTNKSGIELAN--SQIKAEQERQKT-EQEKQKANKSAIELE 193
+ IE + ++++N++ E+ N ++IK + E+Q+ ++E + K A+ELE
Sbjct: 84 IKSERELRSLNIEEDIAKERSNQANREIENLQNEIKHKSEKQEVLKKEMLELEKLALELE 143
Query: 194 QQKQKTI----NTQRDLIKEQKDFIKETE 218
+ + TQ+ + K++++ +++TE
Sbjct: 144 NLVENEVKNIKETQQIIFKKKEELVEKTE 172
>ref|NP_223773.1| putative [Helicobacter pylori J99]
Length = 263
Score = 37.0 bits (84), Expect = 9e-04
Identities = 18/87 (20%), Positives = 44/87 (49%)
Query: 141 DRANKSGIELEQERQKTNKSGIELANSQIKAEQERQKTEQEKQKANKSAIELEQQKQKTI 200
+R NK ++ + K ++ I+L + +E++ +K E+ +K E+ K++
Sbjct: 28 ERHNKEAEKILLDLNKKDEQAIDLNLEDLPSEKKNEKIEKVTEKQGDFLEPKEEPKEEPE 87
Query: 201 NTQRDLIKEQKDFIKETEQNCQENHNQ 227
+ D+ DF ++T++N Q++ +
Sbjct: 88 ESLEDIFSSLNDFQEKTDKNAQKDEQK 114
Score = 31.6 bits (70), Expect = 0.037
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 6/109 (5%)
Query: 128 ELEQEKKEAENARDRANKSGIELEQERQKTNKSGIELANSQIKAEQERQKTEQEKQKANK 187
+L EKK E K G LE + + + L + ++KT++ QK +
Sbjct: 55 DLPSEKKN-EKIEKVTEKQGDFLEPKEEPKEEPEESLEDIFSSLNDFQEKTDKNAQKDEQ 113
Query: 188 SAIELEQQKQKTINTQRDLIKEQKDFIKETEQNCQENHNQFFIKKLGIK 236
EQ++Q+ + Q+ L + Q++ +E + Q+N NQF K +K
Sbjct: 114 KN---EQEEQRRLREQQRLKQNQEN--QEMLKGLQQNLNQFTQKLESVK 157
Score = 27.7 bits (60), Expect = 0.54
Identities = 21/82 (25%), Positives = 41/82 (49%), Gaps = 6/82 (7%)
Query: 123 TDKQIELEQEKKEAENARDRANK---SGIELEQERQKTNKSGIELANSQIKAEQERQKTE 179
T+KQ + + K+E + + + + S + QE+ N E N Q E++R+ E
Sbjct: 69 TEKQGDFLEPKEEPKEEPEESLEDIFSSLNDFQEKTDKNAQKDEQKNEQ---EEQRRLRE 125
Query: 180 QEKQKANKSAIELEQQKQKTIN 201
Q++ K N+ E+ + Q+ +N
Sbjct: 126 QQRLKQNQENQEMLKGLQQNLN 147
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 36.2 bits (82), Expect = 0.002
Identities = 35/132 (26%), Positives = 67/132 (50%), Gaps = 9/132 (6%)
Query: 80 KELDDKVQDKSKQAEKENQINWWKYSGLTIAASLLLAACSAGDTDKQIELEQEKKEAENA 139
KELD+K + + +KE +I K A L A + ++++ELE+EK E
Sbjct: 119 KELDEKSKQVQELHQKEAEIERLKRENNE--AESRLKAENEKKLNEKLELEREKIE---- 172
Query: 140 RDRANKSGIELEQERQKTNKSGIELANSQIKAEQERQKTEQEKQKANKSAIELEQQKQKT 199
+ K+ ++ +Q+ ++ EL N+Q KAE Q+ + E Q+ AIE +++
Sbjct: 173 KALHEKNELKFKQQEEQLEMLRNELKNAQRKAELSSQQFQGEVQEL---AIEEFLRQKFP 229
Query: 200 INTQRDLIKEQK 211
+++ ++ K Q+
Sbjct: 230 LDSVEEIKKGQR 241
Score = 35.4 bits (80), Expect = 0.003
Identities = 25/106 (23%), Positives = 55/106 (51%), Gaps = 15/106 (14%)
Query: 126 QIELEQEKKEAENARDRANKSGIELEQERQKTNKSGIELANSQIKAEQER---QKTEQEK 182
Q EL+++ K+ + + E+E+ +++ N+ A S++KAE E+ +K E E+
Sbjct: 118 QKELDEKSKQVQELHQKE----AEIERLKRENNE-----AESRLKAENEKKLNEKLELER 168
Query: 183 QKANKSAIELEQQKQKTINTQRDLIKEQKDFIKETEQNCQENHNQF 228
+K K+ E + K K Q ++++ + +K ++ + + QF
Sbjct: 169 EKIEKALHEKNELKFKQQEEQLEMLRNE---LKNAQRKAELSSQQF 211
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 35.8 bits (81), Expect = 0.002
Identities = 62/267 (23%), Positives = 110/267 (40%), Gaps = 17/267 (6%)
Query: 128 ELEQEKKEAENARDRANKSGIELEQERQKTN-KSGIELANSQIKAEQERQKTEQEKQKAN 186
EL + +KE +N ++A G+EL KTN K E A K + K + + +
Sbjct: 13 ELGKTQKELKNVIEQAKDIGLEL-----KTNFKMTPEQAGKLYKYIVDGIKEQIQANQPT 67
Query: 187 KSAIELEQQKQKTINTQRDLIKEQKDFIKETEQNCQENHNQFFIKKLGIKGGIAIEVEAE 246
K+ + + T T + L K+ K+ E Q + KK I + E E
Sbjct: 68 KNPKQDNKDDLNTAATPKPLAKKASKTPKKEETKAQPKPKKTKEKKKEAPAPIIKKKEIE 127
Query: 247 CKTPKPAKTNQTPIQPKHLPNSKQPHSQRGSKAQEFIAYLQKELEFL-PYSQKAIAKQVN 305
NQTP+ ++ P + HSQ KA++ + +QK E L +Q N
Sbjct: 128 IVN---TFENQTPL-VENTPKAVS-HSQI-EKAKQKLQEIQKSREALNKLTQSNTNTTNN 181
Query: 306 FYKPSSIAYLELDPRDFKVTEEWQKENLKIRSKAQAKMLEMRDLKPDPQAHLPTSQSLLF 365
S+++ + + + K E+ K + I+ + ++++ D + + + ++S
Sbjct: 182 ANSASNVSNAKKEISEVKKQEQEIKRHENIKRRTGFRVIKRND-ETENETENSVTESKKP 240
Query: 366 VQK---IFADVNKEIEAVANTEKKAEK 389
Q IF D+ KE + E K K
Sbjct: 241 TQSAAAIFEDIKKEWQEKDKQETKKTK 267
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 35.8 bits (81), Expect = 0.002
Identities = 32/172 (18%), Positives = 71/172 (40%), Gaps = 12/172 (6%)
Query: 122 DTDKQIELEQEKKEAENARDRANKSGIELEQ--ERQKTNKSGIELANSQIKAEQERQKTE 179
+ ++++ +Q+++ AEN +D E + E K + EL + + + E
Sbjct: 188 EMQEEVKEKQKQEVAENPQDEEKPKDDETQGSVEPPKDEEVSKELETQEELETPKEETQE 247
Query: 180 QEKQKANKSAIELEQQKQKTINTQRDLIKEQKDFIKETEQNCQENHNQFFIKKLGIKGGI 239
QE K I+ E+Q++ + ++ ++ +KE ++N + N+ +
Sbjct: 248 QEPIKEETQEIKEEKQEKTQDSPSAQELEAMQELVKEIQENSNDQENKKETQ-------- 299
Query: 240 AIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPHSQRGSKAQEFIAYLQKELE 291
E + +TP+ +T + I + +Q +E IA +E E
Sbjct: 300 --ETQENTETPQDIETQELEIPKEEETQEVAEKTQVQGLEKEEIAETPQEKE 349
Score = 34.3 bits (77), Expect = 0.006
Identities = 51/228 (22%), Positives = 98/228 (42%), Gaps = 21/228 (9%)
Query: 121 GDTDKQIELEQEKKEA-----ENARDRANKSGIELEQERQKTNKSGIELANSQIKAEQER 175
G+T K+ E+ KKE E +++ + E Q+ +K E S + E
Sbjct: 170 GETPKEEAQEEVKKEEVKEMQEEVKEKQKQEVAENPQDEEKPKDD--ETQGSVEPPKDEE 227
Query: 176 QKTEQEKQKANKSAIELEQQKQKTINTQRDLIKEQKDFIKETEQNCQE-NHNQFFIKKLG 234
E E Q+ ++ E E Q+Q+ I + IKE+K + + QE Q +K++
Sbjct: 228 VSKELETQEELETPKE-ETQEQEPIKEETQEIKEEKQEKTQDSPSAQELEAMQELVKEIQ 286
Query: 235 IKGGIAIEVEAECKTPKPAKTNQTP--IQPKHLPNSKQPHSQRGSKAQEFIAYLQKELEF 292
+ E + +T + + +TP I+ + L K+ +Q ++ + + L+KE E
Sbjct: 287 ENSN---DQENKKETQETQENTETPQDIETQELEIPKEEETQEVAEKTQ-VQGLEKE-EI 341
Query: 293 LPYSQKAIAKQVNFYKPSSIAYLELDPRDFKVTEEWQKENLKIRSKAQ 340
Q+ ++ P EL+ +D K+ E ++ ++ AQ
Sbjct: 342 AETPQEKEIQETQDETPQ-----ELEAQDEKLQENETPKDESMQESAQ 384
Score = 32.3 bits (72), Expect = 0.022
Identities = 43/227 (18%), Positives = 81/227 (34%), Gaps = 49/227 (21%)
Query: 130 EQE-KKEAENARDRANKSGIELEQERQKTNKSGIELANSQIKAEQERQKTEQEKQKANKS 188
EQE + E A++ K ++ QE K + N Q + + + +T+ +
Sbjct: 167 EQEGETPKEEAQEEVKKEEVKEMQEEVKEKQKQEVAENPQDEEKPKDDETQGSVEPPKDE 226
Query: 189 AIELEQQKQKTINTQRDLIKEQKDFIKETEQNCQENHNQFFIKKLGIKGGIAIEVEAECK 248
+ E + Q+ + T ++ +EQ+ +ET+ E K
Sbjct: 227 EVSKELETQEELETPKEETQEQEPIKEETQ---------------------------EIK 259
Query: 249 TPKPAKTNQTPIQPKHLPNSKQPHSQRGSKAQEFIAYLQKELEFLPYSQKAIAKQVNFYK 308
K KT + P +Q QE + +Q+ ++ Q N
Sbjct: 260 EEKQEKTQDS------------PSAQELEAMQELVKEIQENSNDQENKKETQETQENTET 307
Query: 309 PSSIAYLELD-PRDFKVTEEWQKENLKIRSKAQAKMLEMRDLKPDPQ 354
P I EL+ P+ ++E ++ K Q + LE ++ PQ
Sbjct: 308 PQDIETQELEIPK--------EEETQEVAEKTQVQGLEKEEIAETPQ 346
>ref|NP_223659.1| putative [Helicobacter pylori J99]
Length = 677
Score = 35.4 bits (80), Expect = 0.003
Identities = 69/302 (22%), Positives = 122/302 (39%), Gaps = 45/302 (14%)
Query: 78 KAKELDDKVQDKSKQ---AEKENQINWWKYSGLTIAASLLLAACSAGDTDKQIELEQEK- 133
K K LD ++ DK+ A+ N++ + + + +L A K +EL ++K
Sbjct: 394 KLKHLDKRLLDKNSHLLLAQLRNEVKTKQNTQYNTLTNPILLA-------KALELSKDKR 446
Query: 134 ---KEAENARDRANKSGIELEQERQKTNKSGIELANSQI----KAEQERQKTEQEKQKAN 186
K +NA A K LE + K N +L ++ K Q+ Q T K
Sbjct: 447 PTLKTFKNAYFSARKYQFMLESFKTKQNDPTYKLNDNTYELVSKQLQDYQNTMLLLAKER 506
Query: 187 KSAIE--LEQQKQKTINTQRDLIKEQKDFIKETEQNCQENHNQFFIKKLGIKGGIAIEVE 244
+E L+Q++++ + +K K + +ET + +E Q F+K++ I+ ++
Sbjct: 507 LLFLEQDLKQKEEEFERAKEHYVKSSKHY-RETSLSPKEK--QGFLKQIKQFSKISKDIL 563
Query: 245 AECKTPKPAKTNQTPIQPKHLPNSKQPHSQRGSKAQEFIAYLQKELE----FLPYSQKAI 300
C A T +L + H++ Q+ I + KE ++ + +K
Sbjct: 564 YTCNEIIGANRFLTHYDNLNLEKVLE-HAKDTKLEQKEIQAITKEPNNDEPWIEFGKKEQ 622
Query: 301 AKQVNFYKPSSIAYLELDPRDFKVTEEWQKENLKIRSKAQAKMLEMRDLKPDPQAHLPTS 360
A+ Y+ A LE KE K +K QA L +L DP+AH
Sbjct: 623 ARAKAHYQ----AMLE-------------KEKAKELAKQQANTLHSNELDDDPKAHAGLK 665
Query: 361 QS 362
Q+
Sbjct: 666 QN 667
>ref|NP_223574.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2399
Score = 35.4 bits (80), Expect = 0.003
Identities = 27/142 (19%), Positives = 55/142 (38%), Gaps = 2/142 (1%)
Query: 130 EQEKKEAENARDRANKSGIELEQERQKTNKSGIELANSQIKAEQERQKTEQEKQKANKSA 189
+++ ++NA ++ + T S + E Q+ +Q+++ K
Sbjct: 451 QEDVANSQNALNKVASDNTIANNDTSYTQSSNPTILKDAQGLENTNQQIQQDEKALEKDL 510
Query: 190 IELEQQKQKTINTQRDLIKEQKDFIKETEQNCQENHNQFFIKKLGIKGGIAIEVEAECKT 249
+++Q T + + ++ EQ Q + N F ++ G++ IA A T
Sbjct: 511 AQIKQLANSTTGFNEQAFTQAQKQEQQDEQALQNDENAFNTEQEGLEQAIANAKHAN-PT 569
Query: 250 PKPAKTNQTPIQPKHLPNSKQP 271
P P + TP KH + P
Sbjct: 570 PNPT-PSPTPTPIKHTAPNTPP 590
>ref|NP_223625.1| putative [Helicobacter pylori J99]
Length = 362
Score = 35.0 bits (79), Expect = 0.003
Identities = 37/168 (22%), Positives = 74/168 (44%), Gaps = 5/168 (2%)
Query: 35 ITNIIRSVGGFFTKIAKRVRG--LVKKHPKKSSAALVVLTHIACKKAKELDDKVQ--DKS 90
I ++++S G + + V G L+K S AL L + + L D ++ +K
Sbjct: 121 IPSVLKSYGHNNSPFLRNVMGELLIKDDAFASEVALKELLYWKTRYHDNLKDMIKSYNKG 180
Query: 91 KQAEKENQINWWKYSGLTIAASLLLAACSAGDTDKQIELEQEKKEAENARDRANKSGIEL 150
+ EK + N + + D Q +QE +++ N+ + G +
Sbjct: 181 SRWEKNEKANADAEKYYEEIQDRIRRLKESKIFDSQSSNDQELQKSANSNLDLDPIGNAM 240
Query: 151 EQERQKTNKSGIELANSQIKAEQERQKTEQEKQKANKSAIELEQQKQK 198
Q +T ++ SQI+ E + QK+++ K+ A++ AI+ +K+K
Sbjct: 241 PQTLAQTETQKSQIEKSQIE-EAQTQKSQEMKEAASEQAIKKPLEKEK 287
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 33.9 bits (76), Expect = 0.008
Identities = 29/104 (27%), Positives = 45/104 (42%), Gaps = 14/104 (13%)
Query: 125 KQIELEQEKKEAENARDR--------ANKSGIELEQERQKTNKSGIELANSQIKAEQERQ 176
K IE E A N D +N G+ QE + T+ S +EL N+Q + QE+
Sbjct: 311 KSIETTNETLNAFNVLDSQAIDLNAISNSVGLNPTQESKITDNS-VELNNAQEQTAQEQT 369
Query: 177 KTEQEKQKANKSAIELEQQKQKTINTQRDLIKEQKDFIKETEQN 220
EQ Q+ ++Q + TQ +EQ +T++N
Sbjct: 370 TQEQTTQEQTTQEQTTQEQTTQEQTTQEQTTQEQ-----DTQEN 408
Score = 23.9 bits (50), Expect = 7.8
Identities = 27/120 (22%), Positives = 52/120 (42%), Gaps = 12/120 (10%)
Query: 137 ENARDRANKSGIELEQERQKTNKSGIELAN--SQIKAEQERQKTEQEKQKANKSAIELEQ 194
+NA + NK+ ++ QE ++ S E N + K E E + E+E + N ++ E
Sbjct: 1802 DNAHETENKNPLDKAQELLESLSSYDEKGNLIAPSKKELENELKEKEAKSVN---LDEEI 1858
Query: 195 QKQKTINTQRDLIKE------QKDFIKETEQNCQENHNQFFIKKLGIKGGIAIEVEAECK 248
K + + D+++ ++ I E Q KKL +GG+ + + + K
Sbjct: 1859 AKGCSFDVYSDVLRHLVQMGIPQNEIAFIHDAKTEEQKQDLFKKLN-RGGVRVLLGSPAK 1917
>ref|NP_222774.1| putative [Helicobacter pylori J99]
Length = 327
Score = 33.9 bits (76), Expect = 0.008
Identities = 22/87 (25%), Positives = 42/87 (47%), Gaps = 3/87 (3%)
Query: 123 TDKQIELEQEKKEAENARDRANKSGIELEQERQKTNKSGIELANSQIKAEQERQKTEQEK 182
T+++ LEQE+ ++A K LE+E Q+ +L ++Q E + Q
Sbjct: 180 TNERDSLEQERARLQDAHGFLEKRCTNLEKENQRLTDKLKQLESAQKSLENTNNQLRQAL 239
Query: 183 QKANKSAIELEQQKQKTINTQRDLIKE 209
+ +N ++L Q K+K + +L +E
Sbjct: 240 ENSN---VQLAQAKEKIAIEKSELERE 263
Score = 31.6 bits (70), Expect = 0.037
Identities = 21/84 (25%), Positives = 32/84 (38%)
Query: 123 TDKQIELEQEKKEAENARDRANKSGIELEQERQKTNKSGIELANSQIKAEQERQKTEQEK 182
T K EL +E K D+ N L ER + L ++ E+ E+E
Sbjct: 152 THKITELTKENKALTTENDKLNHQVTALTNERDSLEQERARLQDAHGFLEKRCTNLEKEN 211
Query: 183 QKANKSAIELEQQKQKTINTQRDL 206
Q+ +LE ++ NT L
Sbjct: 212 QRLTDKLKQLESAQKSLENTNNQL 235
Score = 26.6 bits (57), Expect = 1.2
Identities = 23/115 (20%), Positives = 48/115 (41%), Gaps = 15/115 (13%)
Query: 123 TDKQIELEQEKKEAENARDRANKSGIELEQERQKTNKSGIELANSQIKAEQE-------- 174
T ++ E + AEN SG+E ++ N + + +++K E++
Sbjct: 63 TKDKLTKENTELFAENESLSVKISGLEHSNDQLWQNNNKLTKEKAELKTEKDILAKENTR 122
Query: 175 ----RQKTEQEKQKANKSAIELEQQKQKTINTQRDLIKEQKDFIKETEQNCQENH 225
R + +EK++ L+++ + + +L KE K T +N + NH
Sbjct: 123 LLAARDRLTEEKRELTTEKERLKRENTELTHKITELTKENKAL---TTENDKLNH 174
Score = 25.4 bits (54), Expect = 2.7
Identities = 48/253 (18%), Positives = 92/253 (35%), Gaps = 45/253 (17%)
Query: 128 ELEQEKKEAENARDRANKSGIEL----EQERQKTNK------------------------ 159
ELE E E R+ EL +Q RQK +K
Sbjct: 24 ELEDENTELLREREYLAAETSELKDANDQLRQKNDKLFITKDKLTKENTELFAENESLSV 83
Query: 160 --SGIELANSQIKAEQERQKTEQEKQKANKSAIELEQQKQKTINTQRDLIKEQKDFIKET 217
SG+E +N Q+ + E+ + K K + E + + RD + E+K + T
Sbjct: 84 KISGLEHSNDQLWQNNNKLTKEKAELKTEKDILAKENTR---LLAARDRLTEEKREL-TT 139
Query: 218 EQNCQENHNQFFIKKLGIKGGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPHSQRGS 277
E+ + N K+ + E + T + K N Q L N + Q +
Sbjct: 140 EKERLKRENTELTHKI-----TELTKENKALTTENDKLNH---QVTALTNERDSLEQERA 191
Query: 278 KAQEFIAYLQKELEFLPYSQKAIAKQVNFYKPSSIAYLELDPRDFKVTEEWQKENLKIRS 337
+ Q+ +L+K L + + ++ K A L+ + ++ + + N+++
Sbjct: 192 RLQDAHGFLEKRCTNLEKENQRLTDKL---KQLESAQKSLENTNNQLRQALENSNVQLAQ 248
Query: 338 KAQAKMLEMRDLK 350
+ +E +L+
Sbjct: 249 AKEKIAIEKSELE 261
>ref|NP_223176.1| putative [Helicobacter pylori J99]
Length = 450
Score = 33.1 bits (74), Expect = 0.013
Identities = 30/115 (26%), Positives = 57/115 (49%), Gaps = 15/115 (13%)
Query: 124 DKQIELEQEKKEAENARDRANKSGIELE--QERQKTNKS----------GIELANSQIKA 171
+K+ E+ EKKE E R NK I+ E +E +K N+ + A + A
Sbjct: 240 EKRKEVRIEKKE-ERIDARENKREIKQEAIKEPKKANQGTENAPTLEEKNYQKAERKFDA 298
Query: 172 EQERQKTEQE--KQKANKSAIELEQQKQKTINTQRDLIKEQKDFIKETEQNCQEN 224
++ER+++ E K KA K A+E E+++++ +E++ ++ + N + N
Sbjct: 299 KEERRRSRDERKKTKATKKAMEFEEREKEHDERDEKETEERRKALEMDKGNEKVN 353
Score = 28.9 bits (63), Expect = 0.24
Identities = 27/138 (19%), Positives = 55/138 (39%), Gaps = 26/138 (18%)
Query: 75 ACKKAKELDDKVQDKSKQAEKENQINWWKYSGLTIAASLLLAACSAGDTDKQIELEQEK- 133
A KKA E +++ ++ ++ EKE + +++ LE +K
Sbjct: 314 ATKKAMEFEEREKEHDERDEKETE-------------------------ERRKALEMDKG 348
Query: 134 KEAENARDRANKSGIELEQERQKTNKSGIELANSQIKAEQERQKTEQEKQKANKSAIELE 193
E NA++ + E E N + ++ + ++ K E K + + L+
Sbjct: 349 NEKVNAKENEREINQESANEPSSENNATLKDTENTSVLKESAAKKEAPKPSSKEEKRRLK 408
Query: 194 QQKQKTINTQRDLIKEQK 211
++K+K QR EQ+
Sbjct: 409 EEKKKAKAEQRAREFEQR 426
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 31.2 bits (69), Expect = 0.049
Identities = 36/145 (24%), Positives = 63/145 (42%), Gaps = 20/145 (13%)
Query: 70 VLTHIACKKAKELDDKVQDKSKQAEKENQINWWKYSGLTIAASLLL-------AACSAGD 122
V+ A K EL K KS K+N S LT+ A + + +
Sbjct: 219 VVVEQAINKKNELVLKTMYKSNGDYKDNNAYKKFSSTLTLNADAKVNHGLSSHSGATENL 278
Query: 123 TDKQIELEQEK-KEAENARDRANKSGIELEQERQKTNKSGIELANSQ--IKAEQERQKTE 179
T K + +++ K+ EN + K T+ S +ELAN++ K E E+ ++E
Sbjct: 279 TQKPLTSQEDLLKDTENLNETTPKP----------THLSPLELANAEKLAKLESEQLQSE 328
Query: 180 QEKQKANKSAIELEQQKQKTINTQR 204
QE KA + ++ ++ +K + +R
Sbjct: 329 QEFLKAKEQELKRKEALKKKLEHER 353
>ref|NP_223781.1| ATP synthase F0, subunit b [Helicobacter pylori J99]
Length = 171
Score = 30.4 bits (67), Expect = 0.083
Identities = 19/76 (25%), Positives = 35/76 (46%)
Query: 128 ELEQEKKEAENARDRANKSGIELEQERQKTNKSGIELANSQIKAEQERQKTEQEKQKANK 187
ELEQ K++AE ANK + Q+ + K +E KA + + + +++
Sbjct: 86 ELEQAKEKAELIISDANKEAYTITQKYELQTKMDVENLIKNSKALMDLEVKKIKRELVES 145
Query: 188 SAIELEQQKQKTINTQ 203
+L + K+ + N Q
Sbjct: 146 VFKDLRESKKVSFNAQ 161
>ref|NP_223444.1| putative TYPE I RESTRICTION ENZYME (SPECIFICITY SUBUNIT)
[Helicobacter pylori J99]
Length = 454
Score = 30.4 bits (67), Expect = 0.083
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 5/94 (5%)
Query: 305 NFYKPSSIAYLELDPRDFKVTEEWQKENLKIRSKAQAKMLEMRDLKPDPQAHLPTSQSLL 364
N + PS +L+ RD+ + K + +K L ++ P P L Q ++
Sbjct: 123 NLFNPS---FLKHFLRDYNFRKNISKVANGVTRFNVSKQLLLKITIPIPP--LEIQQEIV 177
Query: 365 FVQKIFADVNKEIEAVANTEKKAEKAGYGYSKRM 398
+ F ++N E+ NTE A K Y Y + M
Sbjct: 178 TILDAFTELNTELNTELNTELNARKKQYQYYQNM 211
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 30.0 bits (66), Expect = 0.11
Identities = 37/153 (24%), Positives = 62/153 (40%), Gaps = 22/153 (14%)
Query: 105 SGLTIAASLLLAACSAGDTDKQIELEQEKKEAENARDRANKSGIELEQERQKTNKSGIEL 164
SG T +S L G DK + E+ + + EQ R K L
Sbjct: 53 SGKTTTSSFLKNLAENGIEDKFANSKIAWYNNESLKIEVYNKQFKEEQLRNSQVKGIFTL 112
Query: 165 ANS------QIKAEQERQKTEQEKQKANKSAIELEQQKQKTINTQRDLIKEQKDFIKETE 218
+I++++E E EK+ N++++++ QK++ KE+KDF
Sbjct: 113 GKKTNENLEKIESKKESINKENEKKIKNEASLQVLTQKKE---------KEEKDFTDSCW 163
Query: 219 QNC-QENHNQF------FIKKLGIKGGIAIEVE 244
+N ++N +F F +K KG I E E
Sbjct: 164 KNLYKKNEEEFKEILEGFKRKEKFKGKILKEFE 196
Score = 30.0 bits (66), Expect = 0.11
Identities = 26/113 (23%), Positives = 57/113 (50%), Gaps = 16/113 (14%)
Query: 124 DKQIELEQEKKEAENARDRANKSGIELEQERQKTNKSGIELANSQIKAEQERQKTEQEK- 182
++Q +++ K+ + N + +NK+ I+ ++ K I N IK ++++K+ +E+
Sbjct: 366 NQQKMIDKSKEMSRNFKLDSNKNEIDAIKDLIKKANEQITNHNETIKDIEKQKKSCKEQT 425
Query: 183 ------------QKANKSAIELEQ---QKQKTINTQRDLIKEQKDFIKETEQN 220
Q+ NK LE+ +K I+ ++ +K+ ++ IKE E+N
Sbjct: 426 WKFLINEFKSDIQEYNKKYCGLEKGINNLEKEISENQEKVKKLENEIKELEKN 478
Score = 29.6 bits (65), Expect = 0.14
Identities = 31/123 (25%), Positives = 58/123 (46%), Gaps = 14/123 (11%)
Query: 122 DTDKQIELEQEKKEAENARDRANKSGIELEQERQKTN------KSGIELANSQIKAEQER 175
DT K+++ E + + A +R ++ I+ EQ +T K IE S+IKA Q++
Sbjct: 312 DTIKKMK-EDYTNKTDEALERLDEI-IKTEQNNSQTKLDTENLKRIIETLRSKIKANQQK 369
Query: 176 ------QKTEQEKQKANKSAIELEQQKQKTINTQRDLIKEQKDFIKETEQNCQENHNQFF 229
+ + K +NK+ I+ + K N Q E I++ +++C+E +F
Sbjct: 370 MIDKSKEMSRNFKLDSNKNEIDAIKDLIKKANEQITNHNETIKDIEKQKKSCKEQTWKFL 429
Query: 230 IKK 232
I +
Sbjct: 430 INE 432
>ref|NP_223889.1| putative [Helicobacter pylori J99]
Length = 219
Score = 28.9 bits (63), Expect = 0.24
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 149 ELEQERQKTNKSGIELANSQIKAEQERQKTEQEKQKANK---SAIELEQQKQKTINT 202
E++QE ++ K I+ Q ++ +Q+T+QE++K NK +++ Q QKT T
Sbjct: 93 EIKQEIKQEIKQEIKQEIKQEIKQEIKQETKQEQEKENKPKQNSVSPVQNDQKTPTT 149
>ref|NP_223195.1| cag island protein [Helicobacter pylori J99]
Length = 522
Score = 28.9 bits (63), Expect = 0.24
Identities = 28/119 (23%), Positives = 55/119 (45%), Gaps = 3/119 (2%)
Query: 77 KKAKELDDKVQ-DKSKQAEKENQINWWKYSGLTIAASLLLAACSAGDTDKQIELEQEKK- 134
K+AKE K Q DK ++ ++E N LT A S + + + I+ ++E +
Sbjct: 152 KEAKEQAQKAQKDKREKRKEERAKNRANLENLTNAMSNPQNLSNNKNLSELIKQQRENEL 211
Query: 135 -EAENARDRANKSGIELEQERQKTNKSGIELANSQIKAEQERQKTEQEKQKANKSAIEL 192
+ E D ++ ++ ++ NK E A Q ++ KT++ ++ ++IEL
Sbjct: 212 DQMERLEDMQEQAQANALKQIEELNKKQAEEAVRQRAKDKISIKTDKSQKSPEDNSIEL 270
Score = 28.1 bits (61), Expect = 0.41
Identities = 32/115 (27%), Positives = 52/115 (44%), Gaps = 30/115 (26%)
Query: 125 KQIELEQEKKEAENA-RDRA-NKSGIELEQERQKTNKSGIELANSQ-------------- 168
KQIE E KK+AE A R RA +K I+ ++ ++ + IEL+ S
Sbjct: 230 KQIE-ELNKKQAEEAVRQRAKDKISIKTDKSQKSPEDNSIELSPSDSAWRTNLVVRTNKA 288
Query: 169 -----IKAEQERQ--------KTEQEKQKANKSAIELEQQKQKTINTQRDLIKEQ 210
++ Q+ K E ++ S IE E +K++ QR+LIK++
Sbjct: 289 LYQFILRIAQKDNFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQE 343
Score = 24.6 bits (52), Expect = 4.6
Identities = 16/88 (18%), Positives = 39/88 (44%), Gaps = 12/88 (13%)
Query: 149 ELEQERQKTNKSGIELANSQIKAEQERQKTEQEKQK------------ANKSAIELEQQK 196
ELE++++ K +Q + +R+K ++E+ K +N + +
Sbjct: 140 ELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANLENLTNAMSNPQNLSNNKNL 199
Query: 197 QKTINTQRDLIKEQKDFIKETEQNCQEN 224
+ I QR+ +Q + +++ ++ Q N
Sbjct: 200 SELIKQQRENELDQMERLEDMQEQAQAN 227
>ref|NP_223706.1| histidine kinase [Helicobacter pylori J99]
Length = 815
Score = 28.1 bits (61), Expect = 0.41
Identities = 25/110 (22%), Positives = 50/110 (44%), Gaps = 16/110 (14%)
Query: 125 KQIELEQEKKE-----AENARDRANKSGIELEQERQKTNKSGIELANSQIKAEQERQKT- 178
K+ E+E+ K+ ++N SG + E ++ K E A ++KA +
Sbjct: 115 KENEIEEVVKKLQAITSQNLEGAKETSGTK-EAPEKEVKKENKEKAKEEVKANKTPTTEN 173
Query: 179 ---------EQEKQKANKSAIELEQQKQKTINTQRDLIKEQKDFIKETEQ 219
E + AN SA E+E + ++ +N +++ KE++ K+ +Q
Sbjct: 174 LTSDNPLADEPDLDYANMSAEEVEAEIERLLNKRQEADKERRAQKKQEDQ 223
>ref|NP_223415.1| putative [Helicobacter pylori J99]
Length = 529
Score = 28.1 bits (61), Expect = 0.41
Identities = 29/93 (31%), Positives = 36/93 (38%), Gaps = 13/93 (13%)
Query: 124 DKQIELEQEKKEAENARDRANKSGIELEQERQKTNKSGIELANSQIKAEQERQKTEQEKQ 183
D++ LE+EKKE E R LEQER+ K +Q KA +
Sbjct: 106 DEKRYLEKEKKELEKERQ-------ILEQERENFKKQRAICKEAQAKALDAMLNYMAYTK 158
Query: 184 KANKSAI------ELEQQKQKTINTQRDLIKEQ 210
KS I ELE QK I KE+
Sbjct: 159 DEIKSMILEQLEEELEAQKSALIRRYEKEAKEE 191
Score = 28.1 bits (61), Expect = 0.41
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Query: 126 QIELEQEKKEAENARDRANKSGIELEQERQKTNKSGIELANSQIKAEQERQKTEQEKQKA 185
Q++ +KKEA A +++R L + + E+ERQ EQE++
Sbjct: 81 QLQTHFDKKEAHLKHLEAQHKEFVRDEKRY--------LEKEKKELEKERQILEQERENF 132
Query: 186 NKSAIELEQQKQKTINTQRDLIKEQKDFIK 215
K ++ + K ++ + + KD IK
Sbjct: 133 KKQRAICKEAQAKALDAMLNYMAYTKDEIK 162
>ref|NP_223640.1| Component of conjugal plasmid transfer system [Helicobacter pylori
J99]
Length = 511
Score = 27.3 bits (59), Expect = 0.70
Identities = 16/101 (15%), Positives = 45/101 (43%), Gaps = 5/101 (4%)
Query: 129 LEQEKKEAENARDRANKSGIELEQERQKTNKSGIELANSQIKAEQERQKTEQ-----EKQ 183
+ ++K++ + +RD + + E K ++ + L + + + Q
Sbjct: 362 VRRDKRKYQKSRDFMRLKRLLEQDEAMKAKRNNMHLIEDTTPQPKNAISVTELLAQIKNQ 421
Query: 184 KANKSAIELEQQKQKTINTQRDLIKEQKDFIKETEQNCQEN 224
+K L +++ KT+ +++IK K K+ ++N +++
Sbjct: 422 TPSKECRALNEEEVKTLEEVKNIIKTPKPLQKDLKKNAKKH 462
>ref|NP_223189.1| cag island protein [Helicobacter pylori J99]
Length = 481
Score = 26.9 bits (58), Expect = 0.92
Identities = 36/136 (26%), Positives = 54/136 (39%), Gaps = 44/136 (32%)
Query: 134 KEAENARDRANKSGIELEQERQKTNKSGIE--LANSQIKA-EQERQK---TEQEKQKANK 187
KE NA + A S + + + + IE +ANSQ+ A E+ER+K E+EKQ+
Sbjct: 259 KETNNANE-AQPSPYATQTAPENSKEKLIEELIANSQLIANEEEREKKLLAEKEKQET-- 315
Query: 188 SAIELEQQKQKTINTQRDLIKEQKDFIKETEQNCQENHNQFFIKKLGIKGGIAIEVEAEC 247
EL + K K + Q+ L A+E E +
Sbjct: 316 ---ELAKYKLKDLENQKKLK--------------------------------ALEAELKK 340
Query: 248 KTPKPAKTNQTPIQPK 263
K K + + PI PK
Sbjct: 341 KNTKKPRVVEVPIPPK 356
Score = 26.6 bits (57), Expect = 1.2
Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 33/136 (24%)
Query: 137 ENARDR------ANKSGIELEQERQKTNKSGIELANSQIKAEQERQKTEQEKQK----AN 186
EN++++ AN I E+ER+K ++ AE+E+Q+TE K K N
Sbjct: 279 ENSKEKLIEELIANSQLIANEEEREK-----------KLLAEKEKQETELAKYKLKDLEN 327
Query: 187 KSAIELEQQKQKTINTQRDLIKEQKDFIKETEQN-------CQENHNQFFIK-----KLG 234
+ ++ + + K NT++ + E K ++ + +EN+N + K
Sbjct: 328 QKKLKALEAELKKKNTKKPRVVEVPIPPKTSDSDETMRVIKEKENYNGLLVDKETTIKRS 387
Query: 235 IKGGIAIEVEAECKTP 250
KG + E KTP
Sbjct: 388 YKGTLISENSYSKKTP 403
>ref|NP_223796.1| putative SIGNAL RECOGNITION PARTICLE PROTEIN [Helicobacter pylori
J99]
Length = 448
Score = 26.2 bits (56), Expect = 1.6
Identities = 35/146 (23%), Positives = 63/146 (42%), Gaps = 33/146 (22%)
Query: 113 LLLAACSAGDTDKQIELEQEKKEAENARDRANKSGIELEQERQKTNKSGIELANSQIKAE 172
+LL AC D + +EQ K E G+E+ E NKS E+AN+ +K
Sbjct: 125 VLLCAC---DLQRLAAVEQLKVLGEQV-------GVEVFHEE---NKSVKEIANNALKRA 171
Query: 173 QERQKTEQEKQKANKSAIELEQQKQKTINTQRDLIKEQKDFIKETE----------QNCQ 222
+E Q A + AI+ E ++ +KE K+ + E Q+
Sbjct: 172 KEAQFDVLIVDSAGRLAIDKELMQE---------LKEVKEVLNPHEVLYVADALSGQDGV 222
Query: 223 ENHNQFFIKKLGIKGGIAIEVEAECK 248
++ N F +++G+ G + + +++ K
Sbjct: 223 KSANT-FNEEIGVSGVVLSKFDSDSK 247
>ref|NP_223561.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 363
Score = 26.2 bits (56), Expect = 1.6
Identities = 20/92 (21%), Positives = 42/92 (44%), Gaps = 2/92 (2%)
Query: 130 EQEKKEAENARDRANKSG-IELEQERQKTNKSGIELANSQIKAEQERQKTEQEKQKANKS 188
++ KKE + +K+ ++L E+ K + +I Q Q T+ E Q+ NK
Sbjct: 15 QERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKI-ITQTAQLTQVEMQEENKK 73
Query: 189 AIELEQQKQKTINTQRDLIKEQKDFIKETEQN 220
++ K+ + +K+ + +K+T +N
Sbjct: 74 TMQEVASAMKSNKETNESLKDFQGALKDTMEN 105
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 26.2 bits (56), Expect = 1.6
Identities = 26/106 (24%), Positives = 53/106 (49%), Gaps = 15/106 (14%)
Query: 130 EQEKKEAENARDRANKSGIELE-QERQKTNKSGIELANSQIKA----------EQERQKT 178
E+EK+E E + +E + Q++ K K ++ A+ +A ++E+ K
Sbjct: 1254 EKEKQECEKLLTPEARKFLEKQRQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKY 1313
Query: 179 EQE-KQKANKSAIEL---EQQKQKTINTQRDLIKEQKDFIKETEQN 220
QE ++KA ++ +++K+K N DLI+E ++ + +QN
Sbjct: 1314 LQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKKAQNKQN 1359
>ref|NP_222816.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 564
Score = 26.2 bits (56), Expect = 1.6
Identities = 22/72 (30%), Positives = 34/72 (46%), Gaps = 5/72 (6%)
Query: 144 NKSGIE-LEQERQKTNKSGIELANSQIKAEQERQKTEQEKQKANKSAIELEQQKQKTINT 202
NK+ ++ L Q Q+T KS + NS + K N S + + +++ I T
Sbjct: 296 NKTSMDKLVQITQETQKS---MKNSSTTLNSVKNKATDIASMMNASIEQSQGLRKRLIET 352
Query: 203 QRDLIKEQKDFI 214
Q L+KE KD I
Sbjct: 353 Q-GLVKESKDAI 363
>ref|NP_223477.1| putative [Helicobacter pylori J99]
Length = 153
Score = 25.8 bits (55), Expect = 2.0
Identities = 14/52 (26%), Positives = 25/52 (47%)
Query: 279 AQEFIAYLQKELEFLPYSQKAIAKQVNFYKPSSIAYLELDPRDFKVTEEWQK 330
A E + Y+ K+ I KQ FY+PS++ +D ++ E ++K
Sbjct: 88 ALEILGYVPKDSLEKANFYAPIKKQAQFYRPSALGLFHNPIKDARLHECFEK 139
>ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99]
Length = 856
Score = 25.8 bits (55), Expect = 2.0
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 12/105 (11%)
Query: 176 QKTEQEKQKANKSAIELEQQKQKTINTQRDLIKEQKDFIKETEQ-NCQ-ENHNQFFIKKL 233
Q+ E EKQ A+E+E K+ ++++KE D +E Q Q EN + F +
Sbjct: 417 QRLEMEKQ-----ALEME-NKESNHKRMQEILKELSDLKEEKIQLEAQFENEKEVFKEIS 470
Query: 234 GIKGGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPHSQRGSK 278
+K +E+E K + K N Q + SK P ++ K
Sbjct: 471 RLK----MEMEGLKKEAERFKRNGDYQQAAEIEYSKIPEKEKKEK 511
>ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEIN [Helicobacter pylori
J99]
Length = 280
Score = 25.0 bits (53), Expect = 3.5
Identities = 16/49 (32%), Positives = 27/49 (54%), Gaps = 6/49 (12%)
Query: 172 EQERQKTEQEKQKANKSAIELEQQKQKTINTQRDLIKEQKDFIKETEQN 220
++E K E +K++A + A E KQ T +D++KE+ K+ E N
Sbjct: 129 KKEEPKEEPKKEEAKEEAKEKSVPKQVTT---KDIVKEKD---KQEESN 171
>ref|NP_223180.1| putative [Helicobacter pylori J99]
Length = 706
Score = 25.0 bits (53), Expect = 3.5
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 150 LEQERQKTNKSGIELANSQIKAEQERQKTEQEKQKANKSAIELEQQKQKTINTQRDLIKE 209
LE E + K E + K E+E K ++EK+ + S+ + ++ D++++
Sbjct: 548 LEAETLEEYKPKKEKKEKKEKKEKEEYKLKKEKKVYDLSSYKFSPHSRELF----DILRK 603
Query: 210 QKDFIKETEQNCQENHNQFFI 230
+ IK ++ EN N +I
Sbjct: 604 E---IKTLDERVTENFNSKYI 621
>ref|NP_224125.1| N-UTILIZATION SUBSTANCE PROTEIN A [Helicobacter pylori J99]
Length = 395
Score = 24.6 bits (52), Expect = 4.6
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 1 MESVKTGKTNKVGKNTEMANTKANKETHFK 30
+ES+K G N++ K+ + KA +++HF+
Sbjct: 101 LESMKQGAINRLFKDLQYQLEKALEDSHFE 130
>ref|NP_223759.1| putative [Helicobacter pylori J99]
Length = 267
Score = 24.6 bits (52), Expect = 4.6
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Query: 4 VKTGKTNKVGKNTEMANTKANKETHFKQVSAITNIIRSVGGFFTKIA-KRVRGLVKKHPK 62
+ KT + T+ N AN E Q AITNI + +I+ + + + +
Sbjct: 161 ITKNKTQSLEAITQAKNN-ANNEISNNQTQAITNITEAKTNANNEISNNQTQAITNINEA 219
Query: 63 KSSAALVVLTHIACKKAKELDDKVQDKSK 91
K SA T I K + +++ Q+K++
Sbjct: 220 KESAT----TQINANKQEAINNITQEKTQ 244
>ref|NP_223643.1| putative [Helicobacter pylori J99]
Length = 338
Score = 24.6 bits (52), Expect = 4.6
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 144 NKSGIELEQERQKT---NKSGIELANSQIKAEQERQKTEQEKQKANKSAIELEQ 194
N++ LE+ R T N+ +LAN + Q R +++ QK NK++ +E+
Sbjct: 285 NRNEALLERMRSYTLLKNEKYNQLANETKQQTQTRSQSQSYYQKKNKASSGIER 338
>ref|NP_223617.1| putative [Helicobacter pylori J99]
Length = 500
Score = 24.6 bits (52), Expect = 4.6
Identities = 16/74 (21%), Positives = 34/74 (45%), Gaps = 13/74 (17%)
Query: 149 ELEQERQKTNKSGIELANSQIKAEQERQKTEQEKQKA-----------NKSAIELEQQKQ 197
ELE E +K + + ++K ++E+Q ++ NKS E+E++ +
Sbjct: 116 ELENEHEKYEREFNRIVEEEVKKQKEKQSLSNRAKEGIRNVGNKMLGRNKSDEEIEKRAE 175
Query: 198 KTINTQRDLIKEQK 211
+ + +L K+ K
Sbjct: 176 RI--AKNELEKDTK 187
>ref|NP_223515.1| putative [Helicobacter pylori J99]
Length = 541
Score = 24.6 bits (52), Expect = 4.6
Identities = 21/96 (21%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Query: 128 ELEQEKKEAENARDRANKSGIELEQERQKTNKSGIELANSQI---KAEQERQKTEQEKQK 184
E++ + E ++ A + G E + T S A + +++E+++ ++EK+K
Sbjct: 445 EVKTRRPEPTKDQNNAIQQGETKNNESKNTPISKENAAKKEAPKPSSKEEKRRLKEEKKK 504
Query: 185 ANKSAIELEQQKQKTINTQRDLIKEQKDFIKETEQN 220
A E +++ + +RD KE ++ K E N
Sbjct: 505 AKAEQRAREFEQRAREHQERD-EKELEERRKALEMN 539
>ref|NP_223639.1| putative [Helicobacter pylori J99]
Length = 328
Score = 24.3 bits (51), Expect = 6.0
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 196 KQKTINTQRDLIKEQKDFIKETEQNCQENHNQFFIKKLGIK 236
K K IN + +L ++ K KE ++ +E F+KK+G+K
Sbjct: 32 KAKAIN-EEELEEQVKAKAKEQQKTQREKTLNGFLKKVGLK 71
>ref|NP_223560.1| putative [Helicobacter pylori J99]
Length = 524
Score = 24.3 bits (51), Expect = 6.0
Identities = 31/144 (21%), Positives = 57/144 (39%), Gaps = 16/144 (11%)
Query: 62 KKSSAALVVLTHIACKKAKELDDKVQDKSKQAEKENQI-------NWWKYSGLTIAASLL 114
KK+ L A K+ K L K +K+ K I N K T+ L
Sbjct: 268 KKTPPLKEALQMNAIKRDKTLSKKKPEKTPIHAKTQTIAPSATPENAPKIPLKTLPLMPL 327
Query: 115 LAACSAGDTDKQIELEQEKKEAENARDRANKSGIELEQERQKTNKSGIELANSQIKAEQE 174
+ A + + LE+E+K E + ++ ++ ++TN S + N+Q +
Sbjct: 328 IGANPPPNDNAPTPLEKEEKTKEISDNK---------EKAKETNSSAQSVQNTQASDKTS 378
Query: 175 RQKTEQEKQKANKSAIELEQQKQK 198
K+ K+ +L+Q+ Q+
Sbjct: 379 DNKSTTPKETIRHFTQQLKQEIQE 402
>ref|NP_222894.1| putative [Helicobacter pylori J99]
Length = 268
Score = 24.3 bits (51), Expect = 6.0
Identities = 14/77 (18%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 122 DTDKQIELEQEKKEAENARDRANKSGIELE-QERQKTNKSGIELANSQIKAEQERQKTEQ 180
D K E E ++ D+ +K ++ QE + + + A ++K +E+Q++++
Sbjct: 69 DEKKDDEFESLNMDSPKQEDKLDKVVDNIKKQESENSMPIQTDQAQMEMKTTEEKQESQK 128
Query: 181 EKQKANKSAIELEQQKQ 197
E + + +++ Q
Sbjct: 129 ELKAVEPIPMSTQKESQ 145
>ref|NP_224210.1| FLAGELLAR BASAL-BODY ROD PROTEIN (DISTAL ROD PROTEIN) [Helicobacter
pylori J99]
Length = 262
Score = 23.9 bits (50), Expect = 7.8
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 156 KTNKSGIELANSQIKAEQERQKTEQEKQKANKSAIELEQQKQKTINT 202
K + +EL+N ++ E T Q +AN +I+ +T+N+
Sbjct: 213 KLRQGFLELSNVRLVEEMTDLITAQRAYEANSKSIQTADAMLQTVNS 259
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 23.9 bits (50), Expect = 7.8
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 288 KELEFLPYSQKAIAKQVNFYKPSSIAYLELDPRD 321
K+ F K++ +N++ PS L+L P++
Sbjct: 732 KKYNFFALDDKSLLDGLNYFIPSLFGTLKLSPKE 765
>ref|NP_224073.1| putative motility protein [Helicobacter pylori J99]
Length = 195
Score = 23.9 bits (50), Expect = 7.8
Identities = 15/61 (24%), Positives = 32/61 (51%), Gaps = 2/61 (3%)
Query: 152 QERQKTNKSGIELANSQIKAEQERQKTEQEKQKANKSAIELEQQKQKTINTQRDLIKEQK 211
+E ++ S + A + K E + EQE+++ K EL ++K K ++ + + +QK
Sbjct: 58 REHEEEQDSSLNTALPEDKTAIEAK--EQEQKEKRKHWYELFKKKPKPKSSMGEFVFDQK 115
Query: 212 D 212
+
Sbjct: 116 E 116
>ref|NP_224062.1| putative [Helicobacter pylori J99]
Length = 258
Score = 23.9 bits (50), Expect = 7.8
Identities = 16/70 (22%), Positives = 32/70 (44%), Gaps = 7/70 (10%)
Query: 133 KKEA-------ENARDRANKSGIELEQERQKTNKSGIELANSQIKAEQERQKTEQEKQKA 185
KKEA E+ ++ +S E+ Q ++ GI+ +I + +KT +E+
Sbjct: 47 KKEAIILVGVKESVKEVKEESVKEIHQNAEEKQSLGIKTPQEEIITPKPPKKTPKEESHN 106
Query: 186 NKSAIELEQQ 195
E++Q+
Sbjct: 107 GDKLHEIKQE 116
>ref|NP_223782.1| ATP synthase B' [Helicobacter pylori J99]
Length = 144
Score = 23.9 bits (50), Expect = 7.8
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 171 AEQERQKTEQEKQKANKSAIELEQQKQKTINTQRDL----IKEQKDFIKETEQ 219
AE+ R+ + QKA +S + +QK+ +N + + ++ +K +KE Q
Sbjct: 72 AEKRREMLAEAIQKATESYDAVIKQKENELNQEFEAFAKQLQNEKQILKEQLQ 124
>ref|NP_223721.1| putative [Helicobacter pylori J99]
Length = 223
Score = 23.9 bits (50), Expect = 7.8
Identities = 18/49 (36%), Positives = 26/49 (52%), Gaps = 8/49 (16%)
Query: 48 KIAKRVRGLVKKHPKKSSAALVVLTHIACKKAKELDDKVQDKSKQAEKE 96
K K +R +K+H SA V +++ +KE + KV DK K EKE
Sbjct: 100 KNVKELRNYIKEH---FSAYYVNISY-----SKEHNFKVGDKDKNDEKE 140
>ref|NP_223664.1| putative [Helicobacter pylori J99]
Length = 466
Score = 23.9 bits (50), Expect = 7.8
Identities = 26/109 (23%), Positives = 45/109 (40%), Gaps = 10/109 (9%)
Query: 134 KEAENARDRANKSGIELEQERQKTNKSGIELANSQIKAEQERQKTEQEKQKANKSAIELE 193
K A++ DRAN++ + + NK+ L S + Q E+ + A + E
Sbjct: 62 KLAQDTLDRANQTLNSINKVNDVLNKTNQFLTGSILSIPNPMQYVEKIQSFAKQVQANTE 121
Query: 194 QQKQKTINTQ-RDLIKEQKDFIKETEQN---------CQENHNQFFIKK 232
+ K+ N R+ I ++ K E N ++N +QFF K
Sbjct: 122 RIKENAQNYDIRNQIAAKRISEKCPELNWDVSQDASPTEKNLHQFFTSK 170
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.309 0.125 0.334
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 404,479
Number of Sequences: 1491
Number of extensions: 18883
Number of successful extensions: 185
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 65
Number of HSP's gapped (non-prelim): 76
length of query: 398
length of database: 494,079
effective HSP length: 80
effective length of query: 318
effective length of database: 374,799
effective search space: 119186082
effective search space used: 119186082
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 50 (23.9 bits)