BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645807|ref|NP_207984.1| aldo-keto reductase,
putative [Helicobacter pylori 26695]
(329 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223285.1| UDP-N-ACETYLMURAMATE--ALANINE LIGASE [Heli... 28 0.33
ref|NP_223712.1| putative [Helicobacter pylori J99] 25 2.1
ref|NP_224004.1| putative [Helicobacter pylori J99] 25 3.6
ref|NP_223633.1| putative [Helicobacter pylori J99] 24 6.2
ref|NP_223090.1| putative [Helicobacter pylori J99] 23 8.1
>ref|NP_223285.1| UDP-N-ACETYLMURAMATE--ALANINE LIGASE [Helicobacter pylori J99]
Length = 449
Score = 28.1 bits (61), Expect = 0.33
Identities = 23/70 (32%), Positives = 38/70 (53%), Gaps = 8/70 (11%)
Query: 225 DFRSVSPRFNQENLAKNYALVELIQDHAHAKGVTPAQLALSWI----LHTQKIIVPLFGT 280
+F+ + RF + L KN + LI D+AH A L + I L+TQ+ I+ ++
Sbjct: 298 NFKGIKKRF--DILQKNNLI--LIDDYAHHPTEIGATLKSARIYANLLNTQEKIIVIWQA 353
Query: 281 TKESRLIENI 290
K SRL++N+
Sbjct: 354 HKYSRLMDNL 363
>ref|NP_223712.1| putative [Helicobacter pylori J99]
Length = 78
Score = 25.4 bits (54), Expect = 2.1
Identities = 16/48 (33%), Positives = 26/48 (53%), Gaps = 7/48 (14%)
Query: 206 LGKGFLGAKFEKNATFASEDFRSVSPRFNQENLAKNYALVELIQDHAH 253
LGK + K N TF+ E R++ RF+ + L +EL++D+ H
Sbjct: 13 LGKRY---KISLNNTFSDEMKRTLKERFHNQEL----NALELLKDYLH 53
>ref|NP_224004.1| putative [Helicobacter pylori J99]
Length = 248
Score = 24.6 bits (52), Expect = 3.6
Identities = 15/47 (31%), Positives = 28/47 (58%), Gaps = 5/47 (10%)
Query: 283 ESRLIENIGALQVSWSQKELEIFQKE---LTAIKIEGARYPERINEM 326
++ L++N+ A + + ++ FQKE L A+K+E A ER+N +
Sbjct: 41 KNSLLDNVQAY--FFQAQNIKEFQKERLILEALKLENADLKERLNSI 85
>ref|NP_223633.1| putative [Helicobacter pylori J99]
Length = 274
Score = 23.9 bits (50), Expect = 6.2
Identities = 12/47 (25%), Positives = 25/47 (52%), Gaps = 3/47 (6%)
Query: 2 QQRHLGPLKVGALALGCMGMTYGYGEVHDKKQMVKLIHKALELGINF 48
Q +H G + + A+ + C+G + + + + +KL+ K E+ NF
Sbjct: 14 QAKHFGIILIKAIVVFCIGFYFSF---FLRNKTMKLLSKKDEILANF 57
>ref|NP_223090.1| putative [Helicobacter pylori J99]
Length = 440
Score = 23.5 bits (49), Expect = 8.1
Identities = 21/94 (22%), Positives = 34/94 (35%), Gaps = 7/94 (7%)
Query: 38 IHKALELGINFFDTAEAYGEDNEKLLGEAIKPFKDKVVVASKFGIYYADPNDK------- 90
I K L + A ++NE L + KP K K+V Y K
Sbjct: 25 ITKPRALSFSLKSEENALNDNNEALFWDLKKPIKVKIVAPKGIKRYEIKVTTKDNLILYE 84
Query: 91 YATMFLDSSPNRIKSAIEGSLKRLKVECIDLYYQ 124
++ LD + I + L+ +C+D +Q
Sbjct: 85 KESLVLDKPKSLEVPLIRPEIMGLEGKCLDYEFQ 118
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.318 0.135 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 345,537
Number of Sequences: 1491
Number of extensions: 15795
Number of successful extensions: 44
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 44
Number of HSP's gapped (non-prelim): 5
length of query: 329
length of database: 494,079
effective HSP length: 78
effective length of query: 251
effective length of database: 377,781
effective search space: 94823031
effective search space used: 94823031
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)