BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645810|ref|NP_207987.1| ribosomal protein S7 (rps7)
[Helicobacter pylori 26695]
         (155 letters)

Database: NC_000921.faa
           1491 sequences; 494,079 total letters

Searching...done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_223836.1|  30S RIBOSOMAL PROTEIN S7 [Helicobacter pyl...   305  3e-85
ref|NP_223618.1|  putative [Helicobacter pylori J99]               31  0.018
ref|NP_223140.1|  OLIGOPEPTIDASE [Helicobacter pylori J99]         26  0.57
ref|NP_223878.1|  putative [Helicobacter pylori J99]               25  1.3
ref|NP_223739.1|  putative Outer membrane protein [Helicobac...    25  1.3
ref|NP_224088.1|  putative [Helicobacter pylori J99]               23  2.8
ref|NP_223854.1|  POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE ...    23  2.8
ref|NP_223382.1|  putative TRANSCRIPTIONAL REGULATOR [Helico...    23  4.8

>ref|NP_223836.1| 30S RIBOSOMAL PROTEIN S7 [Helicobacter pylori J99]
          Length = 155

 Score =  305 bits (782), Expect = 3e-85
 Identities = 155/155 (100%), Positives = 155/155 (100%)

Query: 1   MRRRKAPVREVLGDPVYGNKVVTKFINKMMFDGKKSVAEKIIYKAFNKIEEKSGEKGIEV 60
           MRRRKAPVREVLGDPVYGNKVVTKFINKMMFDGKKSVAEKIIYKAFNKIEEKSGEKGIEV
Sbjct: 1   MRRRKAPVREVLGDPVYGNKVVTKFINKMMFDGKKSVAEKIIYKAFNKIEEKSGEKGIEV 60

Query: 61  FEKALERVRPLVEVRSRRVGGATYQVPVEVRASRQQSLSIRWILEATRKRNERMMVDRLA 120
           FEKALERVRPLVEVRSRRVGGATYQVPVEVRASRQQSLSIRWILEATRKRNERMMVDRLA
Sbjct: 61  FEKALERVRPLVEVRSRRVGGATYQVPVEVRASRQQSLSIRWILEATRKRNERMMVDRLA 120

Query: 121 NELMDAASDKGAAFKKKEDVHKMAEANKAFAHYRW 155
           NELMDAASDKGAAFKKKEDVHKMAEANKAFAHYRW
Sbjct: 121 NELMDAASDKGAAFKKKEDVHKMAEANKAFAHYRW 155



>ref|NP_223618.1| putative [Helicobacter pylori J99]
          Length = 340

 Score = 30.8 bits (68), Expect = 0.018
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 3/80 (3%)

Query: 24  KFINKMMFDGKKSVAEKIIYKAFNKIEE-KSGEKGIEVFEKALERVRPLV--EVRSRRVG 80
           KF+N  + +  KSV E   Y     +EE K+ + G++  EK  E++R  +  E  S  V 
Sbjct: 54  KFLNSQLQNSLKSVIESFDYSKEKALEEIKALDLGVKDIEKTYEKLRANLEEEYSSVAVN 113

Query: 81  GATYQVPVEVRASRQQSLSI 100
               +V  EVR  +    S+
Sbjct: 114 SVVKKVIEEVRDQKPYLASL 133



>ref|NP_223140.1| OLIGOPEPTIDASE [Helicobacter pylori J99]
          Length = 578

 Score = 25.8 bits (55), Expect = 0.57
 Identities = 12/39 (30%), Positives = 24/39 (60%)

Query: 34  KKSVAEKIIYKAFNKIEEKSGEKGIEVFEKALERVRPLV 72
           +K+++E+ I    +  + K  +K  + F K+LE+ RPL+
Sbjct: 173 EKTLSEEEILALLHNPKRKIRKKSQKAFSKSLEKSRPLL 211



>ref|NP_223878.1| putative [Helicobacter pylori J99]
          Length = 136

 Score = 24.6 bits (52), Expect = 1.3
 Identities = 12/29 (41%), Positives = 18/29 (61%)

Query: 28 KMMFDGKKSVAEKIIYKAFNKIEEKSGEK 56
          K + DG K +AEK + +AF K +   G+K
Sbjct: 44 KPIVDGVKPLAEKGLQEAFRKDKLAEGQK 72



>ref|NP_223739.1| putative Outer membrane protein [Helicobacter pylori J99]
          Length = 511

 Score = 24.6 bits (52), Expect = 1.3
 Identities = 9/37 (24%), Positives = 21/37 (56%)

Query: 17 YGNKVVTKFINKMMFDGKKSVAEKIIYKAFNKIEEKS 53
          +GNK++  +I K +   ++ ++ K     FN ++ K+
Sbjct: 27 WGNKIIASYIEKKINPNERYLSVKTFKLRFNSLDFKA 63



>ref|NP_224088.1| putative [Helicobacter pylori J99]
          Length = 218

 Score = 23.5 bits (49), Expect = 2.8
 Identities = 10/30 (33%), Positives = 18/30 (59%)

Query: 104 LEATRKRNERMMVDRLANELMDAASDKGAA 133
           + A   + ER++   L+N L++ A DK +A
Sbjct: 111 ITANNTKKERVLFGALSNPLLEGAIDKVSA 140



>ref|NP_223854.1| POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE [Helicobacter pylori J99]
          Length = 688

 Score = 23.5 bits (49), Expect = 2.8
 Identities = 24/127 (18%), Positives = 53/127 (40%), Gaps = 4/127 (3%)

Query: 10  EVLGDPVYGNKVVTKFINKMMFDGKKSVAEKIIYKAFNKIEEKSGEKGIEVFEKALERVR 69
           EVL   +   K   K I K+M + K+ +     +    +I   + +K IE+  +    ++
Sbjct: 515 EVLYQALLQAKRARKHILKIMHEAKEKIVINFSHLPQTEIFNVAPDKIIEIIGQGGRVIK 574

Query: 70  PLVEVRSRRVGGATYQVPVEVRASRQQSLSIRWI----LEATRKRNERMMVDRLANELMD 125
            +VE    ++   T    V++  ++++ L  +      L +  +  E+  +D +    + 
Sbjct: 575 EIVEKFEVKIDLNTPSGEVKIMGNKERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVK 634

Query: 126 AASDKGA 132
              D GA
Sbjct: 635 RIVDFGA 641



>ref|NP_223382.1| putative TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99]
          Length = 328

 Score = 22.7 bits (47), Expect = 4.8
 Identities = 9/29 (31%), Positives = 19/29 (65%)

Query: 37  VAEKIIYKAFNKIEEKSGEKGIEVFEKAL 65
           V + ++ + F+K+ E  G++G+ +F K L
Sbjct: 246 VKKDLVLEHFDKMVEFYGDRGVIMFRKNL 274



  Database: NC_000921.faa
    Posted date:  Dec 10, 2001  4:36 PM
  Number of letters in database: 494,079
  Number of sequences in database:  1491
  
Lambda     K      H
   0.318    0.132    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 140,184
Number of Sequences: 1491
Number of extensions: 5417
Number of successful extensions: 24
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 8
length of query: 155
length of database: 494,079
effective HSP length: 70
effective length of query: 85
effective length of database: 389,709
effective search space: 33125265
effective search space used: 33125265
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)