BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645813|ref|NP_207990.1| ribosomal protein L7/L12
(rpl7/l12) [Helicobacter pylori 26695]
(125 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223839.1| 50S RIBOSOMAL PROTEIN L7/L12 [Helicobacter... 232 2e-63
ref|NP_223761.1| putative [Helicobacter pylori J99] 28 0.10
ref|NP_222877.1| putative [Helicobacter pylori J99] 28 0.10
ref|NP_223158.1| putative [Helicobacter pylori J99] 26 0.29
ref|NP_223375.1| putative [Helicobacter pylori J99] 26 0.38
ref|NP_223933.1| 30S RIBOSOMAL PROTEIN S11 [Helicobacter py... 25 0.86
ref|NP_223645.1| putative [Helicobacter pylori J99] 24 1.1
ref|NP_223559.1| PHOSPHOTRANSACETYLASE [Helicobacter pylori... 24 1.5
ref|NP_222789.1| UREASE BETA SUBUNIT [Helicobacter pylori J99] 23 1.9
ref|NP_223351.1| putative HYDANTOIN UTILIZATION [Helicobact... 23 2.5
ref|NP_224208.1| PYRIDOXAL PHOSPHATE BIOSYNTHETIC PROTEIN A... 22 4.3
ref|NP_222783.1| putative [Helicobacter pylori J99] 22 4.3
ref|NP_223402.1| putative [Helicobacter pylori J99] 22 5.6
ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 22 7.3
ref|NP_223400.1| putative [Helicobacter pylori J99] 22 7.3
ref|NP_224028.1| TRNA DELTA(2)-ISOPENTENYLPYROPHOSPHATE TRA... 21 9.5
ref|NP_223772.1| putative TONB-INDEPENDENT PROTEIN-UPTAKE P... 21 9.5
ref|NP_223333.1| ASPARTATE AMINOTRANSFERASE [Helicobacter p... 21 9.5
>ref|NP_223839.1| 50S RIBOSOMAL PROTEIN L7/L12 [Helicobacter pylori J99]
Length = 125
Score = 232 bits (592), Expect = 2e-63
Identities = 124/125 (99%), Positives = 125/125 (99%)
Query: 1 MAISKEEVLEYIGSLSVLELSELVKMFEKKFGVSATPTVVAGAAVAGGAAAESEEKTEFN 60
MAISKEEVLEYIGSLSVLELSELVKMFE+KFGVSATPTVVAGAAVAGGAAAESEEKTEFN
Sbjct: 1 MAISKEEVLEYIGSLSVLELSELVKMFEEKFGVSATPTVVAGAAVAGGAAAESEEKTEFN 60
Query: 61 VILADSGAEKIKVIKVVREITGLGLKEAKDATEKTPHVLKEGVNKEEAETIKKKLEEVGA 120
VILADSGAEKIKVIKVVREITGLGLKEAKDATEKTPHVLKEGVNKEEAETIKKKLEEVGA
Sbjct: 61 VILADSGAEKIKVIKVVREITGLGLKEAKDATEKTPHVLKEGVNKEEAETIKKKLEEVGA 120
Query: 121 KVEVK 125
KVEVK
Sbjct: 121 KVEVK 125
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 27.7 bits (60), Expect = 0.10
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Query: 26 MFEKKFGVSATPTVVAGAAVAGGAAAESEEKTEFNVILADS---GAEKIKVIKVVREITG 82
MFEK ++ + + G A+A A + K F + +D+ G ++ K+ V +++
Sbjct: 674 MFEKSDQRASDISEILGGAIARFARFDDPSKALFEALKSDNIKKGLKEFKIADVTKDMFD 733
Query: 83 LGLKEAKDAT--EKTPHVLKEGVNKEEAETIKKKL 115
KE KD + T ++L E + K+L
Sbjct: 734 PKSKEFKDIDIYDFTHYLLMVNREPNENNPVLKRL 768
>ref|NP_222877.1| putative [Helicobacter pylori J99]
Length = 243
Score = 27.7 bits (60), Expect = 0.10
Identities = 14/37 (37%), Positives = 21/37 (55%)
Query: 86 KEAKDATEKTPHVLKEGVNKEEAETIKKKLEEVGAKV 122
+EAK+ T++ P KE N E T+KK+ E K+
Sbjct: 25 EEAKEPTKEEPKESKENSNYSEKMTVKKEDAEKYGKI 61
>ref|NP_223158.1| putative [Helicobacter pylori J99]
Length = 912
Score = 26.2 bits (56), Expect = 0.29
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 26 MFEKKFGVSATPTVVAGAAVAGGAAAESEEKTEFNVILADS---GAEKIKVIKVVREITG 82
MFEK ++ + + G A+A A + K F + +D+ G + K+ + +++
Sbjct: 594 MFEKSDQSASDISEILGGAIARFARFDDPSKALFESLKSDNIKKGLKDYKIADITKDMFN 653
Query: 83 LGLKEAKD 90
KE KD
Sbjct: 654 PDSKEFKD 661
>ref|NP_223375.1| putative [Helicobacter pylori J99]
Length = 140
Score = 25.8 bits (55), Expect = 0.38
Identities = 13/52 (25%), Positives = 26/52 (50%)
Query: 74 IKVVREITGLGLKEAKDATEKTPHVLKEGVNKEEAETIKKKLEEVGAKVEVK 125
++V + + L ++AK + ++ ++K E KK EEV ++E K
Sbjct: 48 MEVSKRLKALSAEDAKKFRANFSRIARKNLSKMSEEDFKKMREEVRKELEEK 99
>ref|NP_223933.1| 30S RIBOSOMAL PROTEIN S11 [Helicobacter pylori J99]
Length = 131
Score = 24.6 bits (52), Expect = 0.86
Identities = 13/42 (30%), Positives = 24/42 (56%), Gaps = 3/42 (7%)
Query: 82 GLGLKEAKDATEKTPHVLKEGVNKEEAETIKKKLEEVGAKVE 123
GLG K +K + TP+ ++ V ++ + ++EVG KV+
Sbjct: 50 GLGFKGSK---KSTPYAAQQAVESALSKAKEHGVKEVGIKVQ 88
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 24.3 bits (51), Expect = 1.1
Identities = 17/62 (27%), Positives = 30/62 (47%)
Query: 57 TEFNVILADSGAEKIKVIKVVREITGLGLKEAKDATEKTPHVLKEGVNKEEAETIKKKLE 116
T + L D E+ K ++++ LKE +E+ H + NK+ AE K+KL+
Sbjct: 2089 THTEIKLYDLKNEESKDYELIKVKEVEPLKENASMSEELTHKKLKEQNKQIAEQNKEKLD 2148
Query: 117 EV 118
+
Sbjct: 2149 AI 2150
>ref|NP_223559.1| PHOSPHOTRANSACETYLASE [Helicobacter pylori J99]
Length = 519
Score = 23.9 bits (50), Expect = 1.5
Identities = 20/65 (30%), Positives = 30/65 (45%), Gaps = 12/65 (18%)
Query: 69 EKIKVIKVVREITGLGLKEAKD-ATEKT-----------PHVLKEGVNKEEAETIKKKLE 116
E K + +R+ GL +EA+ A +KT H + GVN AETI+ L+
Sbjct: 273 EFAKSLYELRKSKGLSEQEAERLALDKTYFATMLVHLGYAHAMVSGVNHTTAETIRPALQ 332
Query: 117 EVGAK 121
+ K
Sbjct: 333 IIKTK 337
>ref|NP_222789.1| UREASE BETA SUBUNIT [Helicobacter pylori J99]
Length = 569
Score = 23.5 bits (49), Expect = 1.9
Identities = 11/35 (31%), Positives = 19/35 (53%)
Query: 8 VLEYIGSLSVLELSELVKMFEKKFGVSATPTVVAG 42
+ EY+GS+ V ++++LV FGV + G
Sbjct: 419 ISEYVGSVEVGKVADLVLWSPAFFGVKPNMIIKGG 453
>ref|NP_223351.1| putative HYDANTOIN UTILIZATION [Helicobacter pylori J99]
Length = 712
Score = 23.1 bits (48), Expect = 2.5
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 85 LKEAKDATEKTP--HVLKEGVNKEEAETIKKKLEEVGAKVEV 124
LK + TE+T + V +EE +T K+L E GAK V
Sbjct: 133 LKRIRGVTERTDVKGQVVIPVRQEEVKTAVKELLEAGAKAIV 174
>ref|NP_224208.1| PYRIDOXAL PHOSPHATE BIOSYNTHETIC PROTEIN A [Helicobacter pylori
J99]
Length = 307
Score = 22.3 bits (46), Expect = 4.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 96 PHVLKEGVNKEEAETIKKKLEE 117
PH +EG+ EE E I K ++E
Sbjct: 194 PHAGEEGLFGEEDEKILKAIQE 215
>ref|NP_222783.1| putative [Helicobacter pylori J99]
Length = 806
Score = 22.3 bits (46), Expect = 4.3
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 54 EEKTEFNVILADSGAEKIKVIKVVREIT 81
+E EFN +AD E +++ V I+
Sbjct: 384 KEGVEFNAYVADPALEHARLVSVASSIS 411
>ref|NP_223402.1| putative [Helicobacter pylori J99]
Length = 400
Score = 21.9 bits (45), Expect = 5.6
Identities = 9/17 (52%), Positives = 12/17 (69%)
Query: 86 KEAKDATEKTPHVLKEG 102
KE+ A KTP ++KEG
Sbjct: 308 KESVGAILKTPKIIKEG 324
>ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 991
Score = 21.6 bits (44), Expect = 7.3
Identities = 8/17 (47%), Positives = 14/17 (82%)
Query: 101 EGVNKEEAETIKKKLEE 117
+G+ ++++ IKKKLEE
Sbjct: 682 QGLISDKSQKIKKKLEE 698
>ref|NP_223400.1| putative [Helicobacter pylori J99]
Length = 327
Score = 21.6 bits (44), Expect = 7.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 82 GLGLKEAKDATEKTPHVLKEGVNKE 106
GL LKE T TP ++ + + KE
Sbjct: 49 GLALKEGDAITLLTPKIVPKPLKKE 73
>ref|NP_224028.1| TRNA DELTA(2)-ISOPENTENYLPYROPHOSPHATE TRANSFERASE [Helicobacter
pylori J99]
Length = 277
Score = 21.2 bits (43), Expect = 9.5
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 76 VVREITGLGLKEAKDATEKTPHVLKEGVNKEEAETIKKKLEE 117
++ EI L +K KD+ +KE V E K+LEE
Sbjct: 189 LIEEIKALYIKYPKDSQPFKAIGVKESVLYLEKRLTLKELEE 230
>ref|NP_223772.1| putative TONB-INDEPENDENT PROTEIN-UPTAKE PROTEIN [Helicobacter
pylori J99]
Length = 417
Score = 21.2 bits (43), Expect = 9.5
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 93 EKTPHVLKEGVNKEEAETI 111
EKTP +LK + K E I
Sbjct: 207 EKTPMILKYNIQKATHENI 225
>ref|NP_223333.1| ASPARTATE AMINOTRANSFERASE [Helicobacter pylori J99]
Length = 390
Score = 21.2 bits (43), Expect = 9.5
Identities = 10/46 (21%), Positives = 22/46 (47%)
Query: 72 KVIKVVREITGLGLKEAKDATEKTPHVLKEGVNKEEAETIKKKLEE 117
K++K++ + T+ V EG+ +E ET+++ E+
Sbjct: 254 KLVKLMSNLQSQCTSNINSITQMASIVALEGLVDKEIETMRQAFEK 299
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.306 0.127 0.312
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 117,509
Number of Sequences: 1491
Number of extensions: 4664
Number of successful extensions: 18
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of query: 125
length of database: 494,079
effective HSP length: 68
effective length of query: 57
effective length of database: 392,691
effective search space: 22383387
effective search space used: 22383387
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 43 (21.2 bits)