BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645814|ref|NP_207991.1| ribosomal protein L10
(rpl10) [Helicobacter pylori 26695]
(164 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223840.1| 50S RIBOSOMAL PROTEIN L10 [Helicobacter py... 306 2e-85
ref|NP_224082.1| putative TYPE II RESTRICTION ENZYME [Helic... 28 0.13
ref|NP_223526.1| putative [Helicobacter pylori J99] 24 2.4
ref|NP_223511.1| ADP-L-GLYCERO-D-MANNOHEPTOSE-6-EPIMERASE [... 24 2.4
ref|NP_224209.1| putative O-SIALOGLYCOPROTEIN ENDOPEPTIDASE... 23 4.0
ref|NP_224086.1| LIPOPOLYSACCHARIDE CORE BIOSYNTHESIS PROTE... 23 5.3
ref|NP_223574.1| putative vacuolating cytotoxin (VacA) para... 23 5.3
ref|NP_224094.1| UBIQUINONE/MENAQUINONE BIOSYNTHESIS METHLY... 22 6.9
ref|NP_223879.1| putative [Helicobacter pylori J99] 22 6.9
ref|NP_222859.1| putative [Helicobacter pylori J99] 22 9.0
>ref|NP_223840.1| 50S RIBOSOMAL PROTEIN L10 [Helicobacter pylori J99]
Length = 164
Score = 306 bits (783), Expect = 2e-85
Identities = 156/164 (95%), Positives = 158/164 (96%)
Query: 1 MQKQHQRQHKVELVANLKSQFADAKALLICDYKGLSVRKLEALRNKARNQGIKVQVIKNT 60
MQKQHQRQHKVELVANLKSQF AKALLICDYKGLSV+KLEALRNKAR QGIKVQVIKNT
Sbjct: 1 MQKQHQRQHKVELVANLKSQFDSAKALLICDYKGLSVKKLEALRNKARIQGIKVQVIKNT 60
Query: 61 LAHIAMKETGYSDLDLKETNVFLWGGDQIALSKLVFDFQKEHKDHFVLKAGLFDKESVSV 120
LAHIAMKE G +DLDLKETNVFLWG DQIALSKLVFDFQKEHKDHFVLKAGLFDKESVSV
Sbjct: 61 LAHIAMKEVGCADLDLKETNVFLWGDDQIALSKLVFDFQKEHKDHFVLKAGLFDKESVSV 120
Query: 121 AHVEAVSKLPSKEELMGMLLSVWTAPARYFVTGLDNLRKAKEEN 164
AHVEAVSKLPSKEELMGMLLSVWTAPARYFVTGLDNLRKAKEEN
Sbjct: 121 AHVEAVSKLPSKEELMGMLLSVWTAPARYFVTGLDNLRKAKEEN 164
>ref|NP_224082.1| putative TYPE II RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 406
Score = 28.1 bits (61), Expect = 0.13
Identities = 18/55 (32%), Positives = 26/55 (46%), Gaps = 7/55 (12%)
Query: 78 ETNVFLWG----GDQIALSKLVFDFQKEHKDH---FVLKAGLFDKESVSVAHVEA 125
+ N WG GD S FD QK H +H FV+ AGL + + + ++A
Sbjct: 8 QLNAIKWGEFKLGDLFEASNGDFDIQKRHINHKGEFVITAGLSNNGVLGQSDIKA 62
>ref|NP_223526.1| putative [Helicobacter pylori J99]
Length = 292
Score = 23.9 bits (50), Expect = 2.4
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 92 SKLVFDFQKEHKDHFV 107
S L FDFQ HK+ F+
Sbjct: 230 SLLAFDFQNNHKEVFI 245
>ref|NP_223511.1| ADP-L-GLYCERO-D-MANNOHEPTOSE-6-EPIMERASE [Helicobacter pylori J99]
Length = 329
Score = 23.9 bits (50), Expect = 2.4
Identities = 14/49 (28%), Positives = 21/49 (42%)
Query: 71 YSDLDLKETNVFLWGGDQIALSKLVFDFQKEHKDHFVLKAGLFDKESVS 119
Y D L+ + + GG S L F FQ+ H V+ F ++S
Sbjct: 3 YIDDGLENQTILITGGAGFVGSNLAFYFQENHPKAKVVVLDKFRSNTLS 51
>ref|NP_224209.1| putative O-SIALOGLYCOPROTEIN ENDOPEPTIDASE [Helicobacter pylori
J99]
Length = 340
Score = 23.1 bits (48), Expect = 4.0
Identities = 11/28 (39%), Positives = 16/28 (56%)
Query: 16 NLKSQFADAKALLICDYKGLSVRKLEAL 43
+L F+ KA+ I + GLSV +E L
Sbjct: 65 SLNKDFSKIKAIAITNQPGLSVTLIEGL 92
>ref|NP_224086.1| LIPOPOLYSACCHARIDE CORE BIOSYNTHESIS PROTEIN [Helicobacter pylori
J99]
Length = 157
Score = 22.7 bits (47), Expect = 5.3
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 102 HKDHFVLKAGLFDKESVSVAHVEAVSKLPSKEELMGML 139
H D + LF+K V+VAH A + + S +E + M+
Sbjct: 18 HIDIIHRSSELFEKLIVAVAHSSAKNPMFSLDERLKMM 55
>ref|NP_223574.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter
pylori J99]
Length = 2399
Score = 22.7 bits (47), Expect = 5.3
Identities = 12/34 (35%), Positives = 16/34 (46%)
Query: 3 KQHQRQHKVELVANLKSQFADAKALLICDYKGLS 36
K+H++ +E N F A LLI GLS
Sbjct: 41 KRHKKTKSIEKPFNKNKSFLKASVLLIGALGGLS 74
>ref|NP_224094.1| UBIQUINONE/MENAQUINONE BIOSYNTHESIS METHLYTRANSFERASE [Helicobacter
pylori J99]
Length = 246
Score = 22.3 bits (46), Expect = 6.9
Identities = 8/26 (30%), Positives = 18/26 (68%)
Query: 40 LEALRNKARNQGIKVQVIKNTLAHIA 65
LE L+N+ +N G ++ ++++A I+
Sbjct: 213 LEGLKNELKNAGFEILRTEDSIAQIS 238
>ref|NP_223879.1| putative [Helicobacter pylori J99]
Length = 190
Score = 22.3 bits (46), Expect = 6.9
Identities = 19/71 (26%), Positives = 31/71 (42%), Gaps = 9/71 (12%)
Query: 100 KEHKDHFVLKAGLFDKESVSV------AHVEAVSKLPSKEELMGMLLSVWTAPARYFVTG 153
KEH F KA FD+ES+ ++ KL +EL+ ++ A + V
Sbjct: 17 KEHGIKFEQKALYFDEESLKTTDPREFVYLACKGKLEKAKELLANNCAIVVADS---VVS 73
Query: 154 LDNLRKAKEEN 164
+ N + K +N
Sbjct: 74 VGNRMQRKAKN 84
>ref|NP_222859.1| putative [Helicobacter pylori J99]
Length = 193
Score = 21.9 bits (45), Expect = 9.0
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 86 GDQIALSKLVFDFQKEHKDHFVLKAGLFDK 115
GD++ K++F F ++K+ +L+ F K
Sbjct: 164 GDKVGRYKILFKFVFKNKEELILEQLAFFK 193
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.318 0.133 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 159,096
Number of Sequences: 1491
Number of extensions: 6621
Number of successful extensions: 25
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 10
length of query: 164
length of database: 494,079
effective HSP length: 71
effective length of query: 93
effective length of database: 388,218
effective search space: 36104274
effective search space used: 36104274
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)