BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645816|ref|NP_207993.1| ribosomal protein L11
(rpl11) [Helicobacter pylori 26695]
(141 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223842.1| 50S RIBOSOMAL PROTEIN L11 [Helicobacter py... 278 5e-77
ref|NP_223998.1| REPLICATIVE DNA HELICASE [Helicobacter pyl... 27 0.22
ref|NP_224125.1| N-UTILIZATION SUBSTANCE PROTEIN A [Helicob... 26 0.37
ref|NP_222829.1| DNA TOPOISOMERASE I [Helicobacter pylori J99] 25 0.63
ref|NP_223054.1| septum formation protein [Helicobacter pyl... 24 1.4
ref|NP_223868.1| ASPARTOKINASE 2 ALPHA AND BETA SUBUNITS [H... 23 3.1
ref|NP_224199.1| putative [Helicobacter pylori J99] 23 4.1
ref|NP_223234.1| putative [Helicobacter pylori J99] 23 4.1
ref|NP_223124.1| PROTEASE DO [Helicobacter pylori J99] 23 4.1
ref|NP_222954.1| putative [Helicobacter pylori J99] 23 4.1
ref|NP_223754.1| Pyruvate ferrodoxin oxidoreductase [Helico... 22 5.4
ref|NP_223632.1| putative [Helicobacter pylori J99] 22 5.4
>ref|NP_223842.1| 50S RIBOSOMAL PROTEIN L11 [Helicobacter pylori J99]
Length = 141
Score = 278 bits (710), Expect = 5e-77
Identities = 141/141 (100%), Positives = 141/141 (100%)
Query: 1 MAKKVVGEIKLQIPAGKANPSPPVGPALGQRGVNIMEFCKAFNERTKDMGSFNIPVIITV 60
MAKKVVGEIKLQIPAGKANPSPPVGPALGQRGVNIMEFCKAFNERTKDMGSFNIPVIITV
Sbjct: 1 MAKKVVGEIKLQIPAGKANPSPPVGPALGQRGVNIMEFCKAFNERTKDMGSFNIPVIITV 60
Query: 61 YQDKSFTFITKKPPVTDLIKKASGVEKGSDNPLKNKIAKLTHKQVEEIAQLKMEDLNTST 120
YQDKSFTFITKKPPVTDLIKKASGVEKGSDNPLKNKIAKLTHKQVEEIAQLKMEDLNTST
Sbjct: 61 YQDKSFTFITKKPPVTDLIKKASGVEKGSDNPLKNKIAKLTHKQVEEIAQLKMEDLNTST 120
Query: 121 MEAAKKIVMGSARSMGVEVVD 141
MEAAKKIVMGSARSMGVEVVD
Sbjct: 121 MEAAKKIVMGSARSMGVEVVD 141
>ref|NP_223998.1| REPLICATIVE DNA HELICASE [Helicobacter pylori J99]
Length = 486
Score = 26.9 bits (58), Expect = 0.22
Identities = 26/102 (25%), Positives = 44/102 (42%), Gaps = 17/102 (16%)
Query: 27 ALGQRGVNIMEFCKAFNERTKDMGSFNIPVIITVYQDKSFTFITKKPPVTDLIKKASGVE 86
A +R I E + +++ IP+I V ++S K P+ IK + G+E
Sbjct: 323 ATKERHEQIAEISRELKTLAREL---EIPIIALVQLNRSLENRDDKRPILSDIKDSGGIE 379
Query: 87 KGSDNPL-------------KNKIAKLTHK-QVEEIAQLKME 114
+ +D L NKI KL + +VEE +L ++
Sbjct: 380 QDADIVLFLYRGYIYQMRAEDNKIDKLKKEGKVEEAQELHLK 421
>ref|NP_224125.1| N-UTILIZATION SUBSTANCE PROTEIN A [Helicobacter pylori J99]
Length = 395
Score = 26.2 bits (56), Expect = 0.37
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 11/96 (11%)
Query: 23 PVGPALGQRGVNIMEFCKAFNERTKDMGSF-NIP---VIITVYQDKSFTFITKKPPVTDL 78
P+G A+G +GV I N+ D + N+P + + + K + KK P+ +L
Sbjct: 250 PIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEIKKIPIEEL 309
Query: 79 IKKASGVEKGSDNPLKNKIAKLTHKQVEEIAQLKME 114
S EK S ++ + H Q ++ L +E
Sbjct: 310 ----SAEEKES---IQERFIVNNHLQKAKVRLLDIE 338
>ref|NP_222829.1| DNA TOPOISOMERASE I [Helicobacter pylori J99]
Length = 736
Score = 25.4 bits (54), Expect = 0.63
Identities = 15/52 (28%), Positives = 26/52 (49%), Gaps = 1/52 (1%)
Query: 61 YQDKSFTFITKKPPVTDLIKKASGVEKGSDNPLKNKIAKLTHKQ-VEEIAQL 111
+ DK++ + K V DL K A G++ N + HK+ V++I +L
Sbjct: 19 FLDKNYEVVASKGHVRDLSKFALGIKIDETGFTPNYVVDKDHKELVKQIIEL 70
>ref|NP_223054.1| septum formation protein [Helicobacter pylori J99]
Length = 844
Score = 24.3 bits (51), Expect = 1.4
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 79 IKKASGVEKGSDNPLKNKIAKLTHKQVEEIAQLKMEDLNTSTMEAAKKIVMGSARSMGVE 138
IK+ E +NP K I + +EE + T+ +AKK VM S E
Sbjct: 311 IKEDDLQESPQENPQKENI----EENIEEKETQNAPSFSPLTLTSAKKPVMVKELSENKE 366
Query: 139 VVD 141
++D
Sbjct: 367 ILD 369
>ref|NP_223868.1| ASPARTOKINASE 2 ALPHA AND BETA SUBUNITS [Helicobacter pylori J99]
Length = 405
Score = 23.1 bits (48), Expect = 3.1
Identities = 10/32 (31%), Positives = 22/32 (68%)
Query: 96 KIAKLTHKQVEEIAQLKMEDLNTSTMEAAKKI 127
KIA++++ ++ E+A + + L ++E AKK+
Sbjct: 190 KIAQISYDEMLELASMGAKVLLNRSVELAKKL 221
>ref|NP_224199.1| putative [Helicobacter pylori J99]
Length = 254
Score = 22.7 bits (47), Expect = 4.1
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 93 LKNKIAKLTHKQVEEIAQLKMEDLNT 118
+ KIA++ H + EE+A L + T
Sbjct: 224 IAQKIAEIIHIETEELASLSTHNAQT 249
>ref|NP_223234.1| putative [Helicobacter pylori J99]
Length = 366
Score = 22.7 bits (47), Expect = 4.1
Identities = 13/35 (37%), Positives = 21/35 (59%), Gaps = 1/35 (2%)
Query: 93 LKNKIAKLTHKQVEEIAQLKMEDLNTSTMEAAKKI 127
L ++ L+HK++ +A + EDLN E AKK+
Sbjct: 192 LDKELRFLSHKKMIYVANVGEEDLNILN-EHAKKV 225
>ref|NP_223124.1| PROTEASE DO [Helicobacter pylori J99]
Length = 476
Score = 22.7 bits (47), Expect = 4.1
Identities = 13/52 (25%), Positives = 26/52 (50%)
Query: 75 VTDLIKKASGVEKGSDNPLKNKIAKLTHKQVEEIAQLKMEDLNTSTMEAAKK 126
V DLI + +G + + N L+N I + Q + ++ + T T+ A++
Sbjct: 316 VWDLITEVNGKKVKNTNELRNLIGSMLPNQRVTLKVIRDKKERTFTLTLAER 367
>ref|NP_222954.1| putative [Helicobacter pylori J99]
Length = 362
Score = 22.7 bits (47), Expect = 4.1
Identities = 9/16 (56%), Positives = 12/16 (74%)
Query: 7 GEIKLQIPAGKANPSP 22
GEI ++I AGK P+P
Sbjct: 67 GEIGIKITAGKYEPTP 82
>ref|NP_223754.1| Pyruvate ferrodoxin oxidoreductase [Helicobacter pylori J99]
Length = 407
Score = 22.3 bits (46), Expect = 5.4
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 28 LGQRGVNIMEFCKAFNERTKD 48
LG+R + I+ C+ F E +D
Sbjct: 363 LGERDMTIVHLCEIFEEINED 383
>ref|NP_223632.1| putative [Helicobacter pylori J99]
Length = 411
Score = 22.3 bits (46), Expect = 5.4
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 54 IPVIITVYQDKSFTFITKKP 73
+P +T +DK +TF K+P
Sbjct: 289 LPQFLTRLKDKVYTFFKKQP 308
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.313 0.132 0.359
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 133,072
Number of Sequences: 1491
Number of extensions: 5467
Number of successful extensions: 18
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 12
length of query: 141
length of database: 494,079
effective HSP length: 69
effective length of query: 72
effective length of database: 391,200
effective search space: 28166400
effective search space used: 28166400
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 44 (21.6 bits)