BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645817|ref|NP_207994.1| transcription termination
factor NusG (nusG) [Helicobacter pylori 26695]
(176 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223843.1| TRANSCRIPTION ANTITERMINATION PROTEIN [Hel... 343 2e-96
ref|NP_224083.1| putative TYPE II DNA MODIFICATION ENZYME (... 27 0.41
ref|NP_223330.1| putative [Helicobacter pylori J99] 25 0.90
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 25 1.2
ref|NP_224081.1| DNA POLYMERASE I [Helicobacter pylori J99] 23 3.4
ref|NP_223967.1| CATION EFFLUX SYSTEM PROTEIN [Helicobacter... 23 4.5
ref|NP_223558.1| ACETATE KINASE [Helicobacter pylori J99] 23 4.5
ref|NP_223069.1| putative [Helicobacter pylori J99] 23 5.9
ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter py... 22 7.6
ref|NP_223613.1| GLYCEROL-3-PHOSPHATE DEHYDROGENASE (NAD+) ... 22 7.6
ref|NP_222877.1| putative [Helicobacter pylori J99] 22 7.6
ref|NP_222797.1| methyl-accepting chemotaxis protein (MCP) ... 22 7.6
>ref|NP_223843.1| TRANSCRIPTION ANTITERMINATION PROTEIN [Helicobacter pylori J99]
Length = 176
Score = 343 bits (879), Expect = 2e-96
Identities = 172/176 (97%), Positives = 174/176 (98%)
Query: 1 MMDWYAIQTYSGSEQSVKKAIENLANDHNIRDRIQEIIVPTEDIIEVSKKSKTKVTERSL 60
MMDWYAIQTYSGSEQSVKKAIENLANDH+IRDRIQEIIVPTEDIIEVSKKSKTKV ERSL
Sbjct: 1 MMDWYAIQTYSGSEQSVKKAIENLANDHDIRDRIQEIIVPTEDIIEVSKKSKTKVMERSL 60
Query: 61 YPGYVFIKVDLDTVLWHKIQSLPRVSRFIGENKKPTPLSEADIGHILEKMNNRAAPKPKI 120
YPGYVFIKVDLDTVLWHKIQSLPRVSRFIGENKKPTPLSEADIGHILEKMNNRAAPKPKI
Sbjct: 61 YPGYVFIKVDLDTVLWHKIQSLPRVSRFIGENKKPTPLSEADIGHILEKMNNRAAPKPKI 120
Query: 121 FFEQGEVVRVVEGPFANFTATVEEYDVEHRKLKLNVSIFGRNTPIEILHSQVEKII 176
FFEQGEVVRVVEGPFANFTATVEEYDVEHRKLKLNVSIFGR TPIEIL+SQVEKII
Sbjct: 121 FFEQGEVVRVVEGPFANFTATVEEYDVEHRKLKLNVSIFGRTTPIEILYSQVEKII 176
>ref|NP_224083.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 678
Score = 26.6 bits (57), Expect = 0.41
Identities = 12/52 (23%), Positives = 26/52 (49%), Gaps = 4/52 (7%)
Query: 10 YSGSEQSVKKAIENLANDHNIRDRIQEIIVPTEDIIEVSKKSKTKVTERSLY 61
Y+ + + KA NL + HN ++R E++ D++ + + ++E Y
Sbjct: 581 YARANRKKAKASHNLKDTHNAKERYNEVV----DLVHIGQSCLKFLSEDDYY 628
>ref|NP_223330.1| putative [Helicobacter pylori J99]
Length = 450
Score = 25.4 bits (54), Expect = 0.90
Identities = 14/52 (26%), Positives = 24/52 (45%)
Query: 10 YSGSEQSVKKAIENLANDHNIRDRIQEIIVPTEDIIEVSKKSKTKVTERSLY 61
YS +E+ K A +D NI+ + + T + S K+K K + +Y
Sbjct: 339 YSTNERDDKNAFTLCHSDENIKATKRLYMTATPKVYSESSKAKAKEKDNVIY 390
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 25.0 bits (53), Expect = 1.2
Identities = 19/67 (28%), Positives = 31/67 (45%), Gaps = 9/67 (13%)
Query: 108 EKMNNRAAPKPKIFFEQGEVVRVVEGPFANFTATVEEYDVEHRKLKLNVSIFGRNTPIEI 167
+K +A PKPK E+ + E P +++ ++E N + NTP +
Sbjct: 96 KKEETKAQPKPKKTKEKKK-----EAP----APIIKKKEIEIVNTFENQTPLVENTPKAV 146
Query: 168 LHSQVEK 174
HSQ+EK
Sbjct: 147 SHSQIEK 153
>ref|NP_224081.1| DNA POLYMERASE I [Helicobacter pylori J99]
Length = 897
Score = 23.5 bits (49), Expect = 3.4
Identities = 10/36 (27%), Positives = 21/36 (57%)
Query: 22 ENLANDHNIRDRIQEIIVPTEDIIEVSKKSKTKVTE 57
E + D +++ ++E ++P E I + KSK + +E
Sbjct: 439 EKVGFDEVLKEYLKEDLIPHEKIKDFKTKSKAEKSE 474
>ref|NP_223967.1| CATION EFFLUX SYSTEM PROTEIN [Helicobacter pylori J99]
Length = 1035
Score = 23.1 bits (48), Expect = 4.5
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 29 NIRDRIQEIIVPTEDIIEVSKKSKTKVTERSLYPGYVFIKVDLD 72
N D++QE+ + E ++ K+S + ERS GY +I +DL+
Sbjct: 677 NDTDKLQELAILMEQQLKTLKESLSVFAERS-NNGY-YITLDLN 718
>ref|NP_223558.1| ACETATE KINASE [Helicobacter pylori J99]
Length = 403
Score = 23.1 bits (48), Expect = 4.5
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 16/64 (25%)
Query: 8 QTYSGSEQSVKKAIENLA-------NDH---------NIRDRIQEIIVPTEDIIEVSKKS 51
+ YS +SV + +ENL ND+ +IQ + +PT++ +E++ ++
Sbjct: 334 ENYSALRESVCEGLENLGIALHKPTNDNPGSALVNLSQPNTKIQILRIPTDEELEIALQA 393
Query: 52 KTKV 55
K V
Sbjct: 394 KEMV 397
>ref|NP_223069.1| putative [Helicobacter pylori J99]
Length = 438
Score = 22.7 bits (47), Expect = 5.9
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 72 DTVLWHKIQSLPRVSRF----------IGENKKPTPLSEADIGHILEKMNNRAAPKPKIF 121
D LW KI SLP++ F + N K + +I+ + N K ++F
Sbjct: 268 DKSLWAKISSLPKMPLFNLRPKLNHFPLPSNTKIPQIPIESNAYIVGLVKN----KQEVF 323
Query: 122 FEQGEVVRVVEGPF-ANFTATVEEYDVE 148
+ G + PF F ++EE ++
Sbjct: 324 LKYGNKLMTRLSPFYIEFDHSLEEVKMQ 351
>ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter pylori J99]
Length = 831
Score = 22.3 bits (46), Expect = 7.6
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 144 EYDVEHRKLKLNVSIFGRNTPIEILHSQVEKII 176
E D+ H LKL + + R + L Q+ I+
Sbjct: 532 EVDISHECLKLIIEKYTREAGVRDLRRQIATIM 564
>ref|NP_223613.1| GLYCEROL-3-PHOSPHATE DEHYDROGENASE (NAD+) [Helicobacter pylori J99]
Length = 312
Score = 22.3 bits (46), Expect = 7.6
Identities = 17/82 (20%), Positives = 35/82 (41%), Gaps = 2/82 (2%)
Query: 90 GENKKPTPLSEADIGHILEKMNNRAAPKPKIFFEQGEVVRVVEGPFANFTATVEEYD--V 147
GE + +S D+ L+K+N+ K EQ ++ R ++ +V+
Sbjct: 20 GEKNEVKIISRRDLNEPLKKLNDALISKGSAPIEQVDLERGLKAALYVIAISVQHLREWF 79
Query: 148 EHRKLKLNVSIFGRNTPIEILH 169
++ L N + + IE+L+
Sbjct: 80 QNASLPKNAKVLIASKGIEVLN 101
>ref|NP_222877.1| putative [Helicobacter pylori J99]
Length = 243
Score = 22.3 bits (46), Expect = 7.6
Identities = 23/117 (19%), Positives = 46/117 (38%), Gaps = 9/117 (7%)
Query: 36 EIIVPTEDIIEVSKKSKTKVTERSLYPGYVFIKVDLDTVLWHKIQSLPRVSRFIGENKKP 95
E + E+ E +K+ + E S Y + +K + D + KI E P
Sbjct: 19 EALEAKEEAKEPTKEEPKESKENSNYSEKMTVKKE-DAEKYGKISP--------HEWPPP 69
Query: 96 TPLSEADIGHILEKMNNRAAPKPKIFFEQGEVVRVVEGPFANFTATVEEYDVEHRKL 152
P E + H L+ + + K F+Q +++ A ++E +H+++
Sbjct: 70 PPTEEHKVVHQLDDVTRDSEVKATQIFDQLDLIGASAEKIAKMVKKIQEPLQKHQEI 126
>ref|NP_222797.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 673
Score = 22.3 bits (46), Expect = 7.6
Identities = 11/49 (22%), Positives = 25/49 (50%)
Query: 7 IQTYSGSEQSVKKAIENLANDHNIRDRIQEIIVPTEDIIEVSKKSKTKV 55
+Q+ + + +S+K + + N HN + +Q+ + I S + TK+
Sbjct: 609 VQSIADNAESIKMQNKGVENIHNSINALQQDVQDNLTIANHSLQVSTKI 657
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.317 0.135 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 175,692
Number of Sequences: 1491
Number of extensions: 7195
Number of successful extensions: 22
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 12
length of query: 176
length of database: 494,079
effective HSP length: 72
effective length of query: 104
effective length of database: 386,727
effective search space: 40219608
effective search space used: 40219608
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)