BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646210|ref|NP_207995.1| Preprotein translocase
subunit SecE [Helicobacter pylori 26695]
(59 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223844.1| Preprotein translocase subunit secE [Helic... 110 6e-27
ref|NP_223284.1| putative [Helicobacter pylori J99] 23 1.5
ref|NP_223044.1| FLAGELLAR M-RING PROTEIN [Helicobacter pyl... 23 1.5
ref|NP_223783.1| putative [Helicobacter pylori J99] 22 2.0
ref|NP_222957.1| ABC transporter, permease [Helicobacter py... 22 2.6
ref|NP_223171.1| DNA GYRASE SUBUNIT B [Helicobacter pylori ... 22 3.4
ref|NP_223854.1| POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE ... 21 4.5
ref|NP_223589.1| proline/betaine transporter [Helicobacter ... 21 4.5
ref|NP_222955.1| putative [Helicobacter pylori J99] 21 5.9
>ref|NP_223844.1| Preprotein translocase subunit secE [Helicobacter pylori J99]
Length = 59
Score = 110 bits (275), Expect = 6e-27
Identities = 57/59 (96%), Positives = 59/59 (99%)
Query: 1 MDKWLMQYKLAREELSKVIFPIKEQIRNALISVLVVVSAITLFLALLDFSLGAFVSSVL 59
MDKWLMQY+LAREELSKVIFPIKEQIRNAL+SVLVVVSAITLFLALLDFSLGAFVSSVL
Sbjct: 1 MDKWLMQYRLAREELSKVIFPIKEQIRNALVSVLVVVSAITLFLALLDFSLGAFVSSVL 59
>ref|NP_223284.1| putative [Helicobacter pylori J99]
Length = 120
Score = 22.7 bits (47), Expect = 1.5
Identities = 10/29 (34%), Positives = 18/29 (61%)
Query: 31 ISVLVVVSAITLFLALLDFSLGAFVSSVL 59
++V++ ++ I LFL L DF L + +L
Sbjct: 3 VAVVLFLTLILLFLVLRDFGLASPKQKIL 31
>ref|NP_223044.1| FLAGELLAR M-RING PROTEIN [Helicobacter pylori J99]
Length = 567
Score = 22.7 bits (47), Expect = 1.5
Identities = 11/44 (25%), Positives = 24/44 (54%)
Query: 6 MQYKLAREELSKVIFPIKEQIRNALISVLVVVSAITLFLALLDF 49
M K+ + + + ++ + ALI+ V+++A+ +FL L F
Sbjct: 1 MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPF 44
>ref|NP_223783.1| putative [Helicobacter pylori J99]
Length = 290
Score = 22.3 bits (46), Expect = 2.0
Identities = 8/26 (30%), Positives = 16/26 (60%)
Query: 5 LMQYKLAREELSKVIFPIKEQIRNAL 30
L Y++ +EELSK++ + + N +
Sbjct: 141 LESYQMTQEELSKIVKKSRAHVANIM 166
>ref|NP_222957.1| ABC transporter, permease [Helicobacter pylori J99]
Length = 338
Score = 21.9 bits (45), Expect = 2.6
Identities = 14/44 (31%), Positives = 23/44 (51%), Gaps = 8/44 (18%)
Query: 11 AREELSKVIFPIKEQIRNALISVLVVVSAITLFLALLDFSLGAF 54
AR+ L+++++ + LV +TLF L+ SLGAF
Sbjct: 126 ARDVLARLVYGYRVS--------LVFGILLTLFSVLIGVSLGAF 161
>ref|NP_223171.1| DNA GYRASE SUBUNIT B [Helicobacter pylori J99]
Length = 773
Score = 21.6 bits (44), Expect = 3.4
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 1 MDKWLMQYKLAREELSKVIFPIKEQIRNALISVLVVVSAITLFLALLDFSLGAFVSSVL 59
+ K ++QY + +K PI E I+ LI+V+ + + LF LG+ + L
Sbjct: 289 LSKAILQY-IDNNIKTKESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARAL 346
>ref|NP_223854.1| POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE [Helicobacter pylori J99]
Length = 688
Score = 21.2 bits (43), Expect = 4.5
Identities = 9/22 (40%), Positives = 15/22 (67%)
Query: 5 LMQYKLAREELSKVIFPIKEQI 26
L+Q K AR+ + K++ KE+I
Sbjct: 521 LLQAKRARKHILKIMHEAKEKI 542
>ref|NP_223589.1| proline/betaine transporter [Helicobacter pylori J99]
Length = 452
Score = 21.2 bits (43), Expect = 4.5
Identities = 7/28 (25%), Positives = 18/28 (64%)
Query: 8 YKLAREELSKVIFPIKEQIRNALISVLV 35
++ +++ + V FP+KE +N+L + +
Sbjct: 223 FQQMKQDDALVKFPLKEVFKNSLFGISI 250
>ref|NP_222955.1| putative [Helicobacter pylori J99]
Length = 179
Score = 20.8 bits (42), Expect = 5.9
Identities = 10/18 (55%), Positives = 13/18 (71%)
Query: 30 LISVLVVVSAITLFLALL 47
+ SVL++ AI L LALL
Sbjct: 28 IASVLILFCAILLLLALL 45
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.329 0.141 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,046
Number of Sequences: 1491
Number of extensions: 1316
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 59
length of database: 494,079
effective HSP length: 35
effective length of query: 24
effective length of database: 441,894
effective search space: 10605456
effective search space used: 10605456
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 41 (20.4 bits)