BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645818|ref|NP_207996.1| ribosomal protein L33
(rpL33) [Helicobacter pylori 26695]
(52 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223845.1| 50S RIBOSOMAL PROTEIN L33 [Helicobacter py... 111 3e-27
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 23 0.93
ref|NP_224131.1| putative [Helicobacter pylori J99] 23 1.2
ref|NP_223362.1| EXCINUCLEASE ABC SUBUNIT A. [Helicobacter ... 22 2.7
ref|NP_222847.1| putative [Helicobacter pylori J99] 22 2.7
ref|NP_223889.1| putative [Helicobacter pylori J99] 22 3.5
ref|NP_223731.1| putative [Helicobacter pylori J99] 21 6.0
ref|NP_224207.1| PYRIDOXAL PHOSPHATE SYNTHETASE [Helicobact... 20 7.8
ref|NP_223130.1| putative ZINC PROTEASE [Helicobacter pylor... 20 7.8
ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [He... 20 7.8
>ref|NP_223845.1| 50S RIBOSOMAL PROTEIN L33 [Helicobacter pylori J99]
Length = 52
Score = 111 bits (277), Expect = 3e-27
Identities = 52/52 (100%), Positives = 52/52 (100%)
Query: 1 MKVKIGLKCSDCEDINYSTTKNAKTNTEKLELKKFCPRENKHTLHKEIKLKS 52
MKVKIGLKCSDCEDINYSTTKNAKTNTEKLELKKFCPRENKHTLHKEIKLKS
Sbjct: 1 MKVKIGLKCSDCEDINYSTTKNAKTNTEKLELKKFCPRENKHTLHKEIKLKS 52
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 23.5 bits (49), Expect = 0.93
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 21 KNAKTNTEKLELKKFCPRENKHTLHKEIKLKS 52
KNAKT+ E+ E K P++ + L ++ +K+
Sbjct: 477 KNAKTDEERKECLKNIPQDLQKELLADMSVKA 508
Score = 23.1 bits (48), Expect = 1.2
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 21 KNAKTNTEKLELKKFCPRE-NKHTLHKE 47
KNAKT+ E+ E K P++ K L KE
Sbjct: 692 KNAKTDEERKECLKDLPKDLQKKVLAKE 719
Score = 22.3 bits (46), Expect = 2.1
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 21 KNAKTNTEKLELKKFCPRE-NKHTLHKE 47
KNAKT EK K P++ K L KE
Sbjct: 1097 KNAKTEAEKKRCVKDLPKDLQKKVLAKE 1124
Score = 22.3 bits (46), Expect = 2.1
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 21 KNAKTNTEKLELKKFCPRE-NKHTLHKE 47
KNAKT EK K P++ K L KE
Sbjct: 951 KNAKTEAEKKRCVKDLPKDLQKKVLAKE 978
Score = 22.3 bits (46), Expect = 2.1
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 21 KNAKTNTEKLELKKFCPRENKHTLHKEIKLKS 52
KNAKT+ E+ E K P++ + + + LK+
Sbjct: 546 KNAKTDEERKECLKNLPKDLQSDILAKESLKA 577
>ref|NP_224131.1| putative [Helicobacter pylori J99]
Length = 115
Score = 23.1 bits (48), Expect = 1.2
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 8 KCSDCEDINYSTTKNAKTNTEKLELKKFCPRENKHTLHKEI 48
K S N TT+N + N ++KK E + KE+
Sbjct: 27 KSSQSHQNNTKTTQNNQINQPNKDIKKIEHEEEDEKVTKEV 67
>ref|NP_223362.1| EXCINUCLEASE ABC SUBUNIT A. [Helicobacter pylori J99]
Length = 941
Score = 21.9 bits (45), Expect = 2.7
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 16 NYSTTKNAKTNTEKLELKKFCPRENKHTLHKEIK 49
N +T T+K+E KF P + KH L EIK
Sbjct: 582 NNHSTALYLNGTKKIERPKFEPPKEKHFL--EIK 613
>ref|NP_222847.1| putative [Helicobacter pylori J99]
Length = 481
Score = 21.9 bits (45), Expect = 2.7
Identities = 11/34 (32%), Positives = 16/34 (46%)
Query: 18 STTKNAKTNTEKLELKKFCPRENKHTLHKEIKLK 51
S + N + L ++ EN L KE+KLK
Sbjct: 29 SAMDTLRANRKNLLKNRYSEWENLRELGKEVKLK 62
>ref|NP_223889.1| putative [Helicobacter pylori J99]
Length = 219
Score = 21.6 bits (44), Expect = 3.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 25 TNTEKLELKKFCPRENKHTLHKEIK 49
T T+K E+K+ +E K + +EIK
Sbjct: 87 TATQKQEIKQEIKQEIKQEIKQEIK 111
>ref|NP_223731.1| putative [Helicobacter pylori J99]
Length = 201
Score = 20.8 bits (42), Expect = 6.0
Identities = 11/32 (34%), Positives = 17/32 (52%)
Query: 21 KNAKTNTEKLELKKFCPRENKHTLHKEIKLKS 52
+N N EK++L K ++N E +LKS
Sbjct: 35 QNLSENDEKIKLAKQAKQDNLAIGDLESRLKS 66
>ref|NP_224207.1| PYRIDOXAL PHOSPHATE SYNTHETASE [Helicobacter pylori J99]
Length = 262
Score = 20.4 bits (41), Expect = 7.8
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 32 LKKFCPRENKHTLH 45
LK CP+E K LH
Sbjct: 178 LKDKCPKELKEELH 191
>ref|NP_223130.1| putative ZINC PROTEASE [Helicobacter pylori J99]
Length = 443
Score = 20.4 bits (41), Expect = 7.8
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 13 EDINYSTTKNAKTNTEKLELKKFCPRENKHT 43
E +N+ +TKN K +K+F N T
Sbjct: 81 EHLNFKSTKNLKAGEFDKIVKRFGGVSNAST 111
>ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [Helicobacter pylori J99]
Length = 681
Score = 20.4 bits (41), Expect = 7.8
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 21 KNAKTNTEKLELKKFCPRENKHTLHKEIKLK 51
+ AKT + K +ENK+ KE K+K
Sbjct: 16 QEAKTEATQENKAKESNKENKNNKAKEGKIK 46
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.312 0.128 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,218
Number of Sequences: 1491
Number of extensions: 1824
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of query: 52
length of database: 494,079
effective HSP length: 28
effective length of query: 24
effective length of database: 452,331
effective search space: 10855944
effective search space used: 10855944
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 41 (20.4 bits)