BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645823|ref|NP_208001.1| ulcer-associated gene
restriction endonuclease (iceA) [Helicobacter pylori 26695]
(172 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222763.1| putative TRANSCRIPTIONAL REGULATOR [Helico... 25 0.87
ref|NP_223574.1| putative vacuolating cytotoxin (VacA) para... 25 1.1
ref|NP_223355.1| 3-OXOACID COA-TRANSFERASE, SUBUNIT A [Heli... 24 2.5
ref|NP_222992.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helic... 23 4.3
ref|NP_223970.1| co-chaperone with DnaK [Helicobacter pylor... 23 5.6
ref|NP_223285.1| UDP-N-ACETYLMURAMATE--ALANINE LIGASE [Heli... 22 7.3
ref|NP_223151.1| putative TYPE II DNA MODIFICATION ENZYME (... 22 9.6
>ref|NP_222763.1| putative TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99]
Length = 757
Score = 25.4 bits (54), Expect = 0.87
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Query: 25 CVFNQSICQDIKN---HYKQQCCAMCGVRGNSENTQIEVDHKDGRKDDSRVSDLSTQAFD 81
C F S+ +D N H + C CG+ N + + + + KD + ++ +
Sbjct: 162 CKFCASVYKDAHNKRFHIQGISCKKCGIALNYKRFKNDDALLECAKDIQKGKIIALKGLG 221
Query: 82 DFQALCKACNDK 93
F LC A N K
Sbjct: 222 GFALLCDARNFK 233
>ref|NP_223574.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2399
Score = 25.0 bits (53), Expect = 1.1
Identities = 8/24 (33%), Positives = 13/24 (53%)
Query: 19 NGYNTECVFNQSICQDIKNHYKQQ 42
NGY++ C + + C +N Y Q
Sbjct: 1320 NGYSSPCALDSATCSSFRNTYLGQ 1343
>ref|NP_223355.1| 3-OXOACID COA-TRANSFERASE, SUBUNIT A [Helicobacter pylori J99]
Length = 232
Score = 23.9 bits (50), Expect = 2.5
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 5 KGQTLGNFIDRIRLNGYNTECVFNQSIC 32
K TLGN + R +N C IC
Sbjct: 158 KSDTLGNLVFRKTARNFNPLCAMAAKIC 185
>ref|NP_222992.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helicobacter pylori J99]
Length = 550
Score = 23.1 bits (48), Expect = 4.3
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 9/40 (22%)
Query: 1 MEFDKGQTLGNFIDRIRLNGYNTECVFNQSICQDIKNHYK 40
+EFDK LG FI +N + ++S +IKN+ K
Sbjct: 431 IEFDKASLLGEFI------AFNENKIHSES---EIKNYIK 461
>ref|NP_223970.1| co-chaperone with DnaK [Helicobacter pylori J99]
Length = 369
Score = 22.7 bits (47), Expect = 5.6
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 78 QAFDDFQALCKACNDKKRQI---CKKCKETGY 106
Q F F C AC K + I C+ CK Y
Sbjct: 172 QGFMSFAQTCGACQGKGKIIKTPCQACKGKTY 203
>ref|NP_223285.1| UDP-N-ACETYLMURAMATE--ALANINE LIGASE [Helicobacter pylori J99]
Length = 449
Score = 22.3 bits (46), Expect = 7.3
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 12 FIDRIRLNGYNTECVFNQSICQDIKNHY 39
FIDR+R G E + N ++ + I+ +
Sbjct: 405 FIDRVRKKGDFLELLVNDNVVETIEKGF 432
>ref|NP_223151.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 309
Score = 21.9 bits (45), Expect = 9.6
Identities = 7/13 (53%), Positives = 11/13 (83%)
Query: 31 ICQDIKNHYKQQC 43
I Q++K HYK++C
Sbjct: 121 IKQELKAHYKKEC 133
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.320 0.138 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 193,052
Number of Sequences: 1491
Number of extensions: 8257
Number of successful extensions: 22
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 8
length of query: 172
length of database: 494,079
effective HSP length: 72
effective length of query: 100
effective length of database: 386,727
effective search space: 38672700
effective search space used: 38672700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)