BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645824|ref|NP_208002.1| serine acetyltransferase
(cysE) [Helicobacter pylori 26695]
(171 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223851.1| O-SERINE ACETYLTRANSFERASE [Helicobacter p... 341 7e-96
ref|NP_223342.1| UDP-N-ACETYLGLUCOSAMINE PYROPHOSPHORYLASE ... 42 1e-05
ref|NP_222903.1| UDP-3-O-[3-hydroxymyristoyl [Helicobacter ... 33 0.003
ref|NP_224007.1| UDP-N-ACETYLGLUCOSAMINE ACYLTRANSFERASE [H... 26 0.50
ref|NP_223288.1| putative 2,3,4,5-TETRAHYDROPYRIDINE-2-CARB... 26 0.50
ref|NP_223959.1| putative [Helicobacter pylori J99] 24 2.5
ref|NP_223434.1| ACONITATE HYDRATASE [Helicobacter pylori J99] 23 5.6
>ref|NP_223851.1| O-SERINE ACETYLTRANSFERASE [Helicobacter pylori J99]
Length = 171
Score = 341 bits (874), Expect = 7e-96
Identities = 169/171 (98%), Positives = 171/171 (99%)
Query: 1 MLDLSYSLERVLQEDPAARNKWEVLLLYPGIHALLCYRLAHALHKRRFYFIARALSQLAR 60
MLDLSYSLERVLQEDPAARNKWEVLLLYPGIHALLCYRLAHALHKRRFYFIARALSQLAR
Sbjct: 1 MLDLSYSLERVLQEDPAARNKWEVLLLYPGIHALLCYRLAHALHKRRFYFIARALSQLAR 60
Query: 61 FITGIEIHPGAKIGRGLFIDHGMGVVIGETTEIGDDVTIYHGVTLGGTGKFKGKRHPTLG 120
FITGIEIHPGAKIGRGLFIDHGMGVVIGETTEIGDDVTIYHGVTLGGTGKFKGKRHPTLG
Sbjct: 61 FITGIEIHPGAKIGRGLFIDHGMGVVIGETTEIGDDVTIYHGVTLGGTGKFKGKRHPTLG 120
Query: 121 NRVVVGAGAKVLGAICVGDDVKIGANAVVLSDLPTGSTAVGSKAKTITKDR 171
NRVVVGAGAKVLGAICVGDDV+IGANAVVLSDLPTGSTAVG+KAKTITKDR
Sbjct: 121 NRVVVGAGAKVLGAICVGDDVRIGANAVVLSDLPTGSTAVGAKAKTITKDR 171
>ref|NP_223342.1| UDP-N-ACETYLGLUCOSAMINE PYROPHOSPHORYLASE [Helicobacter pylori J99]
Length = 433
Score = 41.6 bits (96), Expect = 1e-05
Identities = 24/81 (29%), Positives = 44/81 (53%), Gaps = 9/81 (11%)
Query: 87 IGETTEIGDDVTIYHGVTLGGTGKFKGKRHPTL-GNRVVVGAGAKVLGAICVGDDVKIGA 145
IG+ T +G V +T GK K+H T+ G V +G+ ++++ I +G +V IG+
Sbjct: 348 IGKNTNVGAGV-----ITCNYDGK---KKHQTIIGENVFIGSDSQLVAPINIGSNVLIGS 399
Query: 146 NAVVLSDLPTGSTAVGSKAKT 166
+ D+P+GS ++ +T
Sbjct: 400 GTTITKDIPSGSLSLSRTPQT 420
Score = 27.3 bits (59), Expect = 0.23
Identities = 17/59 (28%), Positives = 29/59 (48%), Gaps = 7/59 (11%)
Query: 119 LGNRVVVGAGA-------KVLGAICVGDDVKIGANAVVLSDLPTGSTAVGSKAKTITKD 170
+G VGAG K +G++V IG+++ +++ + GS + TITKD
Sbjct: 348 IGKNTNVGAGVITCNYDGKKKHQTIIGENVFIGSDSQLVAPINIGSNVLIGSGTTITKD 406
>ref|NP_222903.1| UDP-3-O-[3-hydroxymyristoyl [Helicobacter pylori J99]
Length = 336
Score = 33.5 bits (75), Expect = 0.003
Identities = 28/108 (25%), Positives = 45/108 (40%), Gaps = 6/108 (5%)
Query: 58 LARFITGIEIHPGAKIGRGLFIDHGM--GVVIGETTEIGDDVTI-YHGVTLGGTGKFKGK 114
+ R +EI I R +F + + GV I +IG + + H + + G
Sbjct: 194 IVRIQKNVEIGANTAIDRAVFGETLIKEGVKIDNLVQIGHNCVLGEHSIVVSQVGL---S 250
Query: 115 RHPTLGNRVVVGAGAKVLGAICVGDDVKIGANAVVLSDLPTGSTAVGS 162
T G VV G + G + VG+ +IG + V DLP + G+
Sbjct: 251 GSTTTGRNVVFGGQVGIGGHLHVGEFTQIGGKSAVGKDLPPNTNFAGA 298
Score = 27.7 bits (60), Expect = 0.17
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 32/96 (33%)
Query: 85 VVIGETTEIGDDVTIYHGVTLGGTGKFKGK-----------RHPTLGNRVVVGAGAKV-- 131
VVIGE EIG++ IY GV + K GK ++ L + V++ AG+ +
Sbjct: 115 VVIGEGVEIGENSLIYPGVVIADGVKI-GKNCILYPRVILYQNTILEDNVIIHAGSVIGG 173
Query: 132 ------------------LGAICVGDDVKIGANAVV 149
+G + + +V+IGAN +
Sbjct: 174 DGFGYAHTALGEHVKIEHVGIVRIQKNVEIGANTAI 209
>ref|NP_224007.1| UDP-N-ACETYLGLUCOSAMINE ACYLTRANSFERASE [Helicobacter pylori J99]
Length = 270
Score = 26.2 bits (56), Expect = 0.50
Identities = 20/59 (33%), Positives = 26/59 (43%), Gaps = 10/59 (16%)
Query: 67 IHPGAKIGRGLFIDHGMGVVIGETTEIGDDVTIYHGVTLGGTGKFKGKRHPTLGNRVVV 125
I P A+IG+G V IGE IGD V + GV L +G H +G +
Sbjct: 10 ISPKAEIGKG--------VEIGEFCVIGDGVKLDEGVKLHNNVTLQG--HTFIGKNTEI 58
>ref|NP_223288.1| putative 2,3,4,5-TETRAHYDROPYRIDINE-2-CARBOXYLATE
N-SUCCINYLTRANSFERASE [Helicobacter pylori J99]
Length = 401
Score = 26.2 bits (56), Expect = 0.50
Identities = 19/67 (28%), Positives = 33/67 (48%), Gaps = 8/67 (11%)
Query: 85 VVIGETTEIGDDVTIYHGVTLGGTGKFKGKRHPTLGNRVVVGAGAKVLGAICVGDDVKIG 144
VV+GE T+IG ++ GV GG ++G ++GA + + I +GD +
Sbjct: 276 VVVGEGTDIGGGASVL-GVLSGG-----NNNPISIGKNCLLGANS--VTGISLGDGCIVD 327
Query: 145 ANAVVLS 151
A +L+
Sbjct: 328 AGVTILA 334
>ref|NP_223959.1| putative [Helicobacter pylori J99]
Length = 376
Score = 23.9 bits (50), Expect = 2.5
Identities = 9/16 (56%), Positives = 12/16 (74%)
Query: 37 YRLAHALHKRRFYFIA 52
Y+L HAL K+R F+A
Sbjct: 235 YKLLHALEKQRIIFLA 250
>ref|NP_223434.1| ACONITATE HYDRATASE [Helicobacter pylori J99]
Length = 852
Score = 22.7 bits (47), Expect = 5.6
Identities = 11/27 (40%), Positives = 18/27 (65%), Gaps = 1/27 (3%)
Query: 126 GAGAKVLG-AICVGDDVKIGANAVVLS 151
GA +V G ++C+G+ ++ NAVV S
Sbjct: 758 GARTEVPGCSLCMGNQARVRDNAVVFS 784
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.323 0.142 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 158,828
Number of Sequences: 1491
Number of extensions: 6696
Number of successful extensions: 24
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 10
length of query: 171
length of database: 494,079
effective HSP length: 72
effective length of query: 99
effective length of database: 386,727
effective search space: 38285973
effective search space used: 38285973
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)