BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645825|ref|NP_208003.1| hypothetical protein
[Helicobacter pylori 26695]
         (81 letters)

Database: NC_000921.faa
           1491 sequences; 494,079 total letters

Searching...done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_223852.1|  putative [Helicobacter pylori J99]               68  4e-14
ref|NP_222801.1|  putative [Helicobacter pylori J99]               25  0.22
ref|NP_223730.1|  putative [Helicobacter pylori J99]               22  2.4
ref|NP_222807.1|  putative ALPHA(1,2)FUCOSYLTRANSFERASE [Hel...    22  3.2
ref|NP_223086.1|  3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANS...    21  4.2
ref|NP_223674.1|  putative [Helicobacter pylori J99]               20  9.3
ref|NP_223640.1|  Component of conjugal plasmid transfer sys...    20  9.3
ref|NP_223336.1|  METHYLATED-DNA--PROTEIN-CYSTEINE METHYLTRA...    20  9.3

>ref|NP_223852.1| putative [Helicobacter pylori J99]
          Length = 31

 Score = 67.8 bits (164), Expect = 4e-14
 Identities = 30/31 (96%), Positives = 31/31 (99%)

Query: 1  MVPKVGLEPTRDCSHQILSLACLPIPPLRRI 31
          MVPKVGLEPTRDCSHQILSLACLPIPPLRR+
Sbjct: 1  MVPKVGLEPTRDCSHQILSLACLPIPPLRRV 31



>ref|NP_222801.1| putative [Helicobacter pylori J99]
          Length = 450

 Score = 25.4 bits (54), Expect = 0.22
 Identities = 15/39 (38%), Positives = 21/39 (53%)

Query: 23  LPIPPLRRIYRAKSEIIPTYSLKKLNGALGETRTRTRLL 61
           LPI   R+  +   +IIPT SL+ L  A G    R ++L
Sbjct: 344 LPIIGKRKFLKDAQKIIPTLSLEDLEYAHGFGEVRPQVL 382



>ref|NP_223730.1| putative [Helicobacter pylori J99]
          Length = 182

 Score = 21.9 bits (45), Expect = 2.4
 Identities = 15/62 (24%), Positives = 28/62 (44%)

Query: 20  LACLPIPPLRRIYRAKSEIIPTYSLKKLNGALGETRTRTRLLPPPPQDGVSTNSTTSAKN 79
           L CL +   + +YR   +    Y  K+    + +   + +L+P  P + V+   T + K 
Sbjct: 105 LICLGVCEDQLLYRIFKKDEIHYIHKERKYFMKQNEFKKQLVPMNPDNQVNDKLTLNLKE 164

Query: 80  LK 81
           LK
Sbjct: 165 LK 166



>ref|NP_222807.1| putative ALPHA(1,2)FUCOSYLTRANSFERASE [Helicobacter pylori J99]
          Length = 299

 Score = 21.6 bits (44), Expect = 3.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 50  ALGETRTRTRLLPPPPQDG 68
           A+     +T  LPPPP++G
Sbjct: 121 AISSLIKQTFTLPPPPENG 139



>ref|NP_223086.1| 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE [Helicobacter
           pylori J99]
          Length = 270

 Score = 21.2 bits (43), Expect = 4.2
 Identities = 7/17 (41%), Positives = 11/17 (64%)

Query: 2   VPKVGLEPTRDCSHQIL 18
           +P +G+   +DC  QIL
Sbjct: 203 IPTIGIGSGKDCDGQIL 219



>ref|NP_223674.1| putative [Helicobacter pylori J99]
          Length = 200

 Score = 20.0 bits (40), Expect = 9.3
 Identities = 9/28 (32%), Positives = 11/28 (39%)

Query: 52  GETRTRTRLLPPPPQDGVSTNSTTSAKN 79
           G   +   +LP  P  G S      AKN
Sbjct: 81  GSIESIEHILPQKPDQGYSAKEKNWAKN 108



>ref|NP_223640.1| Component of conjugal plasmid transfer system [Helicobacter pylori
           J99]
          Length = 511

 Score = 20.0 bits (40), Expect = 9.3
 Identities = 7/17 (41%), Positives = 11/17 (64%)

Query: 15  HQILSLACLPIPPLRRI 31
           H I +  C+PIP + R+
Sbjct: 462 HTIKTQYCVPIPYIERL 478



>ref|NP_223336.1| METHYLATED-DNA--PROTEIN-CYSTEINE METHYLTRANSFERASE [Helicobacter
           pylori J99]
          Length = 168

 Score = 20.0 bits (40), Expect = 9.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 36  SEIIPTYSLKKLNGALG 52
           S I+P + + + NGALG
Sbjct: 122 SLIVPCHRVVRKNGALG 138



  Database: NC_000921.faa
    Posted date:  Dec 10, 2001  4:36 PM
  Number of letters in database: 494,079
  Number of sequences in database:  1491
  
Lambda     K      H
   0.316    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,412
Number of Sequences: 1491
Number of extensions: 2169
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 81
length of database: 494,079
effective HSP length: 57
effective length of query: 24
effective length of database: 409,092
effective search space:  9818208
effective search space used:  9818208
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.1 bits)
S2: 40 (20.0 bits)