BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644752|ref|NP_206922.1| hypothetical protein
[Helicobacter pylori 26695]
         (43 letters)

Database: NC_000921.faa
           1491 sequences; 494,079 total letters

Searching...done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_222833.1|  putative [Helicobacter pylori J99]               94  6e-22
ref|NP_223362.1|  EXCINUCLEASE ABC SUBUNIT A. [Helicobacter ...    23  0.95
ref|NP_222970.1|  HEAT SHOCK PROTEIN [Helicobacter pylori J99]     22  3.6
ref|NP_223945.1|  50S RIBOSOMAL PROTEIN L5 [Helicobacter pyl...    20  8.1

>ref|NP_222833.1| putative [Helicobacter pylori J99]
          Length = 43

 Score = 94.0 bits (232), Expect = 6e-22
 Identities = 43/43 (100%), Positives = 43/43 (100%)

Query: 1  MYRRLLLNLFCMVFLQACLKPMSDPKAEKVDSQVQCGFGSKDC 43
          MYRRLLLNLFCMVFLQACLKPMSDPKAEKVDSQVQCGFGSKDC
Sbjct: 1  MYRRLLLNLFCMVFLQACLKPMSDPKAEKVDSQVQCGFGSKDC 43



>ref|NP_223362.1| EXCINUCLEASE ABC SUBUNIT A. [Helicobacter pylori J99]
          Length = 941

 Score = 23.5 bits (49), Expect = 0.95
 Identities = 12/33 (36%), Positives = 16/33 (48%)

Query: 2   YRRLLLNLFCMVFLQACLKPMSDPKAEKVDSQV 34
           Y RLL       F   CL+P+S   A  + SQ+
Sbjct: 113 YLRLLFARVGEQFCPTCLEPISSMSASDIISQI 145



>ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99]
          Length = 856

 Score = 21.6 bits (44), Expect = 3.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 15  LQACLKPMSDPKAEKVDSQVQ 35
           +Q  LK +SD K EK+  + Q
Sbjct: 438 MQEILKELSDLKEEKIQLEAQ 458



>ref|NP_223945.1| 50S RIBOSOMAL PROTEIN L5 [Helicobacter pylori J99]
          Length = 181

 Score = 20.4 bits (41), Expect = 8.1
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 21 PMSDPKAEKVDSQVQCGFGSKD 42
          PM  PK EK+   V  G  +KD
Sbjct: 25 PMLLPKLEKIVISVGAGAHAKD 46



  Database: NC_000921.faa
    Posted date:  Dec 10, 2001  4:36 PM
  Number of letters in database: 494,079
  Number of sequences in database:  1491
  
Lambda     K      H
   0.331    0.142    0.457 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,090
Number of Sequences: 1491
Number of extensions: 938
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 43
length of database: 494,079
effective HSP length: 19
effective length of query: 24
effective length of database: 465,750
effective search space: 11178000
effective search space used: 11178000
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 41 (20.4 bits)