BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645826|ref|NP_208004.1| ATP synthase F0, subunit c
(atpE) [Helicobacter pylori 26695]
(105 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223853.1| ATP synthase F0, subunit c [Helicobacter p... 202 2e-54
ref|NP_224102.1| putative PHOSPHATE PERMEASE [Helicobacter ... 24 1.0
ref|NP_223828.1| putative [Helicobacter pylori J99] 24 1.0
ref|NP_223308.1| LYTIC MUREIN TRANSGLYCOSYLASE [Helicobacte... 24 1.0
ref|NP_223566.1| Outer membrane protein/porin [Helicobacter... 23 1.8
ref|NP_223318.1| putative Outer membrane protein [Helicobac... 22 3.0
ref|NP_224101.1| putative [Helicobacter pylori J99] 22 3.9
ref|NP_223125.1| amino acid permease [Helicobacter pylori J99] 22 3.9
ref|NP_224072.1| putative CYTOCHROME C PEROXIDASE [Helicoba... 22 5.1
ref|NP_223472.1| putative osmoprotection binding protein [H... 22 5.1
ref|NP_223421.1| putative [Helicobacter pylori J99] 22 5.1
ref|NP_224178.1| Ubiquinol cytochrome c oxidoreductase, cyt... 21 6.7
ref|NP_223495.1| putative Outer membrane protein [Helicobac... 21 6.7
ref|NP_223381.1| putative Outer membrane protein [Helicobac... 21 6.7
ref|NP_223379.1| L-asparaginase II [Helicobacter pylori J99] 21 6.7
ref|NP_223273.1| putative [Helicobacter pylori J99] 21 6.7
ref|NP_222995.1| putative vacuolating cytotoxin (VacA) para... 21 6.7
ref|NP_223475.1| putative osmoprotection binding protein [H... 21 8.8
ref|NP_223337.1| putative [Helicobacter pylori J99] 21 8.8
>ref|NP_223853.1| ATP synthase F0, subunit c [Helicobacter pylori J99]
Length = 105
Score = 202 bits (514), Expect = 2e-54
Identities = 104/105 (99%), Positives = 104/105 (99%)
Query: 1 MKFLALFFLALVGVAFAHDGGMGGMDMIKSYSILGAMIGLGIAAFGGAIGMGNAAAATIT 60
MKFLALFFLAL GVAFAHDGGMGGMDMIKSYSILGAMIGLGIAAFGGAIGMGNAAAATIT
Sbjct: 1 MKFLALFFLALAGVAFAHDGGMGGMDMIKSYSILGAMIGLGIAAFGGAIGMGNAAAATIT 60
Query: 61 GTARNPGVGGKLLTTMFVAMAMIEAQVIYTLVFAIIAIYSNPFLS 105
GTARNPGVGGKLLTTMFVAMAMIEAQVIYTLVFAIIAIYSNPFLS
Sbjct: 61 GTARNPGVGGKLLTTMFVAMAMIEAQVIYTLVFAIIAIYSNPFLS 105
>ref|NP_224102.1| putative PHOSPHATE PERMEASE [Helicobacter pylori J99]
Length = 533
Score = 23.9 bits (50), Expect = 1.0
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 2 KFLALFFLALVGVAFAHDGG-------MGGMDMIKSYSILGAMIGLGIAAFGGAIGMGNA 54
K L L F A++G A + G +G K+ S+ GA++ + GAI G
Sbjct: 46 KGLLLIFAAVIGGYMAMNIGANDVSNNVGPAVGSKAISMGGAILIAAVCEMLGAIIAGGE 105
Query: 55 AAATITGTARNP 66
+TI G +P
Sbjct: 106 VVSTIKGRIVSP 117
Score = 21.9 bits (45), Expect = 3.9
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 32 SILGAMIGLGIAAFGGAIGMGNAAA 56
+++GA + + GG +G G AAA
Sbjct: 145 TLIGAPVSTSHSVVGGIMGAGMAAA 169
>ref|NP_223828.1| putative [Helicobacter pylori J99]
Length = 391
Score = 23.9 bits (50), Expect = 1.0
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 26 DMIKSYSILGAMIGLGIAAFGGAIGMGN 53
D+ KS+ + A +GL I A+ + +G+
Sbjct: 39 DIAKSFEMESATVGLMITAYAWVVSLGS 66
>ref|NP_223308.1| LYTIC MUREIN TRANSGLYCOSYLASE [Helicobacter pylori J99]
Length = 560
Score = 23.9 bits (50), Expect = 1.0
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 1 MKFLALFFLALVGVAFA 17
M+F LFF+ ++GV F+
Sbjct: 1 MRFFILFFMGMLGVGFS 17
>ref|NP_223566.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 520
Score = 23.1 bits (48), Expect = 1.8
Identities = 18/43 (41%), Positives = 23/43 (52%), Gaps = 8/43 (18%)
Query: 31 YSILGA----MIGLGIAA---FGGAIGMGN-AAAATITGTARN 65
YS+LGA + G ++A GA+G G AAA T GT N
Sbjct: 86 YSLLGAYPTKLNGNDVSANALLSGAVGSGTCAAAGTAGGTTLN 128
>ref|NP_223318.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 906
Score = 22.3 bits (46), Expect = 3.0
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 39 GLGIAAFGGAIGMGNAAAATITGTARNPGVGGKLLT 74
GLG ++GG + G+ + + GT ++ + + T
Sbjct: 464 GLGYGSYGGLMLNGSVSERNLFGTGQSMSLYANIAT 499
>ref|NP_224101.1| putative [Helicobacter pylori J99]
Length = 441
Score = 21.9 bits (45), Expect = 3.9
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 48 AIGMGNAAAATITGTARNPGVGGKLLTTMFVAMAMIEAQVIYTLVFAIIAIYSNPFL 104
A +G ++ G P + KLL +F +M + E + + +IA S FL
Sbjct: 65 ATQLGITLSSLALGWVGEPAIA-KLLAALFESMDLRENPIFIHSMSVVIAFLSITFL 120
>ref|NP_223125.1| amino acid permease [Helicobacter pylori J99]
Length = 475
Score = 21.9 bits (45), Expect = 3.9
Identities = 16/52 (30%), Positives = 23/52 (43%), Gaps = 8/52 (15%)
Query: 44 AFGGAIGMGNAAAATITGTARNPGVGGKLLTTMFVAMAMIEAQVIYTLVFAI 95
AFGGAIG G GT N G L T + + V+Y ++ ++
Sbjct: 26 AFGGAIGTG-----LFVGTGGNIASAGPLGTLIAYCFGGL---VVYCIMLSL 69
>ref|NP_224072.1| putative CYTOCHROME C PEROXIDASE [Helicobacter pylori J99]
Length = 350
Score = 21.6 bits (44), Expect = 5.1
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 11 LVGVAFAHDGGMGGMDMIKS 30
LV H+ G+GG+D+I S
Sbjct: 85 LVSCNTCHNLGLGGVDLIPS 104
>ref|NP_223472.1| putative osmoprotection binding protein [Helicobacter pylori J99]
Length = 161
Score = 21.6 bits (44), Expect = 5.1
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 18 HDGGMGGMDMIKSYSILGAMIGLGIAAFGGAIGM 51
HD + +D+I + I+ A+ L + FG IG+
Sbjct: 47 HDRFIYFIDLIAQHFIIVALSSLIVLVFGVLIGV 80
>ref|NP_223421.1| putative [Helicobacter pylori J99]
Length = 286
Score = 21.6 bits (44), Expect = 5.1
Identities = 12/43 (27%), Positives = 18/43 (40%)
Query: 41 GIAAFGGAIGMGNAAAATITGTARNPGVGGKLLTTMFVAMAMI 83
G +A G G G A+ T A +GG L + M ++
Sbjct: 229 GDSALGVIAGCGGLGASGFTAGATGAVLGGGLAASGLAGMTVL 271
>ref|NP_224178.1| Ubiquinol cytochrome c oxidoreductase, cytochrome b subunit
[Helicobacter pylori J99]
Length = 412
Score = 21.2 bits (43), Expect = 6.7
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 3 FLALFFLALVGVAFAHDGGMGGM 25
FLALFF+ L + A GG+
Sbjct: 389 FLALFFVVLPIITIAERKKQGGV 411
>ref|NP_223495.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 587
Score = 21.2 bits (43), Expect = 6.7
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 67 GVGGKLLTTMFVAMAMIEAQVIYTL 91
G GG+ L +F+ M + + YT+
Sbjct: 213 GKGGEFLHDVFIMMVELAPSMSYTI 237
>ref|NP_223381.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 305
Score = 21.2 bits (43), Expect = 6.7
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 5 ALFFLALVGVAFAHDGGMGGMDMIKSYSILGAMIGLG 41
AL FLA +GV + + K++ LG +G G
Sbjct: 12 ALIFLASLGVLWGNAAEKTPFFKTKNHIYLGFRLGTG 48
>ref|NP_223379.1| L-asparaginase II [Helicobacter pylori J99]
Length = 332
Score = 21.2 bits (43), Expect = 6.7
Identities = 13/65 (20%), Positives = 27/65 (41%)
Query: 29 KSYSILGAMIGLGIAAFGGAIGMGNAAAATITGTARNPGVGGKLLTTMFVAMAMIEAQVI 88
K ++GAM + GA+ + A + + + N GV + T+F +++
Sbjct: 113 KPVVLVGAMRNASSLSADGALNLYYAVSVAVNEKSANKGVLVVMDDTIFRVREVVKTHTT 172
Query: 89 YTLVF 93
+ F
Sbjct: 173 HISTF 177
>ref|NP_223273.1| putative [Helicobacter pylori J99]
Length = 189
Score = 21.2 bits (43), Expect = 6.7
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 20 GGMGGMDMIKSYSILGAMIGL 40
G +G + KS+ GAM+GL
Sbjct: 13 GLLGAFEPKKSHIYFGAMVGL 33
>ref|NP_222995.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2902
Score = 21.2 bits (43), Expect = 6.7
Identities = 15/45 (33%), Positives = 18/45 (39%), Gaps = 7/45 (15%)
Query: 12 VGVAFAHDGGMG-------GMDMIKSYSILGAMIGLGIAAFGGAI 49
VG A GG G G D + ILG + G + F G I
Sbjct: 2639 VGGASFISGGNGTLYGLNVGYDRLVKSVILGGYVAYGYSGFNGNI 2683
>ref|NP_223475.1| putative osmoprotection binding protein [Helicobacter pylori J99]
Length = 553
Score = 20.8 bits (42), Expect = 8.8
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 18 HDGGMGGMDMIKSYSILGAMIGLGIAAFGGAIGM 51
HD + +D++ + I+ A+ L + FG IG+
Sbjct: 47 HDRFIYFIDLLAQHFIIVALSSLIVLVFGVLIGV 80
>ref|NP_223337.1| putative [Helicobacter pylori J99]
Length = 255
Score = 20.8 bits (42), Expect = 8.8
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 67 GVGGKLLTTMFVAMAMIEAQVIYTLVFAIIAIYS 100
G GG + + + I + I ++FA++ +YS
Sbjct: 77 GAGGLIGASFSGFILKIVSSKILMVIFALLVVYS 110
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.329 0.143 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,016
Number of Sequences: 1491
Number of extensions: 3748
Number of successful extensions: 27
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 20
length of query: 105
length of database: 494,079
effective HSP length: 65
effective length of query: 40
effective length of database: 397,164
effective search space: 15886560
effective search space used: 15886560
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 42 (20.8 bits)