BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645829|ref|NP_208007.1| hypothetical protein
[Helicobacter pylori 26695]
(80 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223856.1| putative role in outermembrane permeabilit... 168 2e-44
ref|NP_223942.1| 50S RIBOSOMAL PROTEIN L6 [Helicobacter pyl... 22 1.9
ref|NP_223011.1| GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE [... 22 2.4
ref|NP_223562.1| putative FLAGELLAR BASAL-BODY/ROD/HOOKPROT... 22 3.2
ref|NP_223574.1| putative vacuolating cytotoxin (VacA) para... 21 4.2
ref|NP_223243.1| putative [Helicobacter pylori J99] 21 5.4
ref|NP_223274.1| putative vacuolating cytotoxin (VacA) para... 20 7.1
ref|NP_223936.1| TRANSLATION INITIATION FACTOR IF-1 [Helico... 20 9.3
ref|NP_223176.1| putative [Helicobacter pylori J99] 20 9.3
ref|NP_223048.1| GTP-BINDING PROTEIN [Helicobacter pylori J99] 20 9.3
>ref|NP_223856.1| putative role in outermembrane permeability [Helicobacter pylori
J99]
Length = 766
Score = 168 bits (425), Expect = 2e-44
Identities = 80/80 (100%), Positives = 80/80 (100%)
Query: 1 MSADVGYDIRNNVVLNWNVGIYKKIRCFGIGFQFVNQRRPILTGDPNQPIRVFENNYVKL 60
MSADVGYDIRNNVVLNWNVGIYKKIRCFGIGFQFVNQRRPILTGDPNQPIRVFENNYVKL
Sbjct: 687 MSADVGYDIRNNVVLNWNVGIYKKIRCFGIGFQFVNQRRPILTGDPNQPIRVFENNYVKL 746
Query: 61 ELDFSPITKTNVTYRSLQRK 80
ELDFSPITKTNVTYRSLQRK
Sbjct: 747 ELDFSPITKTNVTYRSLQRK 766
>ref|NP_223942.1| 50S RIBOSOMAL PROTEIN L6 [Helicobacter pylori J99]
Length = 178
Score = 22.3 bits (46), Expect = 1.9
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 9 IRNNVVLNWNVGIYKKIRCFGIGFQ 33
+ NN+V+ + G K + G+G++
Sbjct: 71 LANNIVIGLSAGFSKTLEVNGVGYK 95
>ref|NP_223011.1| GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE [Helicobacter pylori
J99]
Length = 430
Score = 21.9 bits (45), Expect = 2.4
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 36 NQRRPILTGDPNQPIRVFEN 55
N+ + ++ G N P+R F++
Sbjct: 11 NEAKQVIAGGVNSPVRAFKS 30
>ref|NP_223562.1| putative FLAGELLAR BASAL-BODY/ROD/HOOKPROTEIN [Helicobacter pylori
J99]
Length = 605
Score = 21.6 bits (44), Expect = 3.2
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 33 QFVNQRRPILTGDPNQPIRVFENNYVKLEL 62
+F+NQ L D N+PI N + + +
Sbjct: 223 RFLNQDINALANDDNEPIDAITNRKLNVSI 252
>ref|NP_223574.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2399
Score = 21.2 bits (43), Expect = 4.2
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 2 SADVGYDIRNNVVLN 16
SADV + NN+VLN
Sbjct: 1381 SADVTFQSANNLVLN 1395
>ref|NP_223243.1| putative [Helicobacter pylori J99]
Length = 678
Score = 20.8 bits (42), Expect = 5.4
Identities = 7/19 (36%), Positives = 12/19 (62%)
Query: 31 GFQFVNQRRPILTGDPNQP 49
GFQFV+ +P+ + + P
Sbjct: 588 GFQFVSFGKPLFSNNTTNP 606
>ref|NP_223274.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 3194
Score = 20.4 bits (41), Expect = 7.1
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 2 SADVGYDIRNNVVLNW 17
+AD +D+ NN LN+
Sbjct: 1724 NADASFDLGNNSTLNF 1739
>ref|NP_223936.1| TRANSLATION INITIATION FACTOR IF-1 [Helicobacter pylori J99]
Length = 72
Score = 20.0 bits (40), Expect = 9.3
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 50 IRVFENNYVKLELDFSPITKTNVTYR 75
IR+ + VKLEL + K +T+R
Sbjct: 45 IRIALGDRVKLELTPYSLDKGRITFR 70
>ref|NP_223176.1| putative [Helicobacter pylori J99]
Length = 450
Score = 20.0 bits (40), Expect = 9.3
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 59 KLELDFSPITKTNVTYRS 76
K ELD S +TKT+ + S
Sbjct: 190 KRELDTSGVTKTSTPFFS 207
>ref|NP_223048.1| GTP-BINDING PROTEIN [Helicobacter pylori J99]
Length = 604
Score = 20.0 bits (40), Expect = 9.3
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 40 PILTGDPNQPIR 51
P +GDPN P++
Sbjct: 188 PAPSGDPNNPLK 199
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.324 0.143 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,245
Number of Sequences: 1491
Number of extensions: 3281
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 80
length of database: 494,079
effective HSP length: 56
effective length of query: 24
effective length of database: 410,583
effective search space: 9853992
effective search space used: 9853992
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 40 (20.0 bits)