BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645831|ref|NP_208009.1| hypothetical protein
[Helicobacter pylori 26695]
(159 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223857.1| putative [Helicobacter pylori J99] 305 4e-85
ref|NP_223555.1| Hydrogenase expression/formation protein [... 26 0.45
ref|NP_223098.1| putative [Helicobacter pylori J99] 25 1.0
ref|NP_223043.1| putative [Helicobacter pylori J99] 25 1.3
ref|NP_223091.1| putative [Helicobacter pylori J99] 24 1.7
ref|NP_224098.1| putative [Helicobacter pylori J99] 23 2.9
ref|NP_222860.1| putative [Helicobacter pylori J99] 23 5.0
ref|NP_223093.1| putative [Helicobacter pylori J99] 22 6.5
ref|NP_224035.1| ISOLEUCYL-TRNA SYNTHETASE [Helicobacter py... 22 8.5
ref|NP_223323.1| putative [Helicobacter pylori J99] 22 8.5
>ref|NP_223857.1| putative [Helicobacter pylori J99]
Length = 159
Score = 305 bits (781), Expect = 4e-85
Identities = 149/159 (93%), Positives = 151/159 (94%)
Query: 1 MHSPNLEKEETEIIETLLMREKMRLCPLYWRILAFLTDGLLVAFLLSDLLDACDFLHSLY 60
M SPNLEKEETEIIETLL+REKMRLCPLYWRILAFL D LLVAFLLSDLL AC FLHSLY
Sbjct: 1 MRSPNLEKEETEIIETLLVREKMRLCPLYWRILAFLIDSLLVAFLLSDLLRACAFLHSLY 60
Query: 61 WLANPIYHSAFVAMGFIILYGVYEIFFVCLCKMSLAKLVFRIKIIDIYLADCPSRAILLK 120
WL NPIY+SAFV MGFIILYGVYEIFFVCLCKMSLAKLVFRIKIIDIYLADCPSRAILLK
Sbjct: 61 WLTNPIYYSAFVVMGFIILYGVYEIFFVCLCKMSLAKLVFRIKIIDIYLADCPSRAILLK 120
Query: 121 RLGLKIVVFLCPFLWFVAFKNPYHRAWHEEKSKSLLVLF 159
RLGLKIVVFLCPFLWFV FKNPYHRAWHEEKSKSLLVLF
Sbjct: 121 RLGLKIVVFLCPFLWFVVFKNPYHRAWHEEKSKSLLVLF 159
>ref|NP_223555.1| Hydrogenase expression/formation protein [Helicobacter pylori
J99]
Length = 242
Score = 26.2 bits (56), Expect = 0.45
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 2 HSPNLEKEETEIIETLLMREKMRLCPLYWRILAFLTDGLLVAFLLS 47
++PNL K++ +I+E +L + ++ + R +L +GL V +S
Sbjct: 11 NNPNLSKKDIKIVEKILSKNDIKAAEMKER---YLKEGLYVLNFMS 53
>ref|NP_223098.1| putative [Helicobacter pylori J99]
Length = 146
Score = 25.0 bits (53), Expect = 1.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 42 VAFLLSDLLDACDFLHSLYWL 62
V+ ++S LLD CDF+ Y L
Sbjct: 53 VSEIISPLLDVCDFIQDAYIL 73
>ref|NP_223043.1| putative [Helicobacter pylori J99]
Length = 220
Score = 24.6 bits (52), Expect = 1.3
Identities = 15/57 (26%), Positives = 28/57 (48%), Gaps = 2/57 (3%)
Query: 28 LYWRILAFLTDGLLVAFLLSDLLDACDFL--HSLYWLANPIYHSAFVAMGFIILYGV 82
LY + LA +L + LL++ L HS+ WL++ + +A+ + YG+
Sbjct: 96 LYRKNLALGVWFVLSVVIFEALLESLKHLLAHSIQWLSHSANFPSTIALSLALFYGL 152
>ref|NP_223091.1| putative [Helicobacter pylori J99]
Length = 194
Score = 24.3 bits (51), Expect = 1.7
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 59 LYWLANPIYHSAFVAMGFIILYGVYEIFFVC------LCKMSLAKLVFRIKIIDI 107
L +L N + ++ G + +YGV E VC L ++ A++VF+ KI+ +
Sbjct: 112 LIFLGNIHNGAKIISEGSVSVYGVCEGAIVCFGEYLILKEVKSAQIVFQNKILSL 166
>ref|NP_224098.1| putative [Helicobacter pylori J99]
Length = 365
Score = 23.5 bits (49), Expect = 2.9
Identities = 11/37 (29%), Positives = 18/37 (47%)
Query: 44 FLLSDLLDACDFLHSLYWLANPIYHSAFVAMGFIILY 80
F L + DF SL L ++ F+A+G ++ Y
Sbjct: 319 FFLQEAYYKMDFTESLNSLMPLLFFLIFLALGLLVFY 355
>ref|NP_222860.1| putative [Helicobacter pylori J99]
Length = 255
Score = 22.7 bits (47), Expect = 5.0
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 116 AILLKRLGLKIVVFLCPFLWFVA 138
++LL ++ L +V F+ WFVA
Sbjct: 91 SLLLPKILLPMVFFIFSLFWFVA 113
>ref|NP_223093.1| putative [Helicobacter pylori J99]
Length = 165
Score = 22.3 bits (46), Expect = 6.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 70 AFVAMGFIILYGVYEIFFVCLCKMSLAK 97
A +++G +L GVY+ F+C S +K
Sbjct: 6 ALISLGERVLLGVYQNDFLCNSYTSKSK 33
>ref|NP_224035.1| ISOLEUCYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 920
Score = 21.9 bits (45), Expect = 8.5
Identities = 10/19 (52%), Positives = 12/19 (62%)
Query: 6 LEKEETEIIETLLMREKMR 24
LEKE+T + L REK R
Sbjct: 110 LEKEKTSLENPTLFREKCR 128
>ref|NP_223323.1| putative [Helicobacter pylori J99]
Length = 335
Score = 21.9 bits (45), Expect = 8.5
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 1 MHSPNLEKEETEIIETLLMREKMRLCPLYWRILAFLTDGLLVAFLLSDLLDACDFLH 57
+H+ LEK+ ++ +ETL E++ + + + + L + L+ + DA LH
Sbjct: 146 LHAYELEKDYSKALETLECLEELEVPK-----IETIKNYLYLMHLIENKEDAAKILH 197
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.335 0.148 0.482
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 159,266
Number of Sequences: 1491
Number of extensions: 6329
Number of successful extensions: 28
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 10
length of query: 159
length of database: 494,079
effective HSP length: 71
effective length of query: 88
effective length of database: 388,218
effective search space: 34163184
effective search space used: 34163184
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 45 (21.9 bits)