BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645833|ref|NP_208011.1| hypothetical protein
[Helicobacter pylori 26695]
         (63 letters)

Database: NC_000921.faa
           1491 sequences; 494,079 total letters

Searching...done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_223732.1|  putative SUGAR NUCLEOTIDE BIOSYNTHESIS [He...    21  4.4
ref|NP_224144.1|  putative IRON(III) DICITRATE TRANSPORT PRO...    20  7.6
ref|NP_224123.1|  putative IRON-REGULATED OUTER MEMBRANE PRO...    20  7.6
ref|NP_223410.1|  putative [Helicobacter pylori J99]               20  7.6

>ref|NP_223732.1| putative SUGAR NUCLEOTIDE BIOSYNTHESIS [Helicobacter pylori J99]
          Length = 378

 Score = 21.2 bits (43), Expect = 4.4
 Identities = 14/46 (30%), Positives = 24/46 (51%), Gaps = 3/46 (6%)

Query: 14  FFNELAINKKHESSRRCLQLYLNFKEIPCKNIQAIRDSFNWRLGVL 59
           +F  L    KH+SS     + ++ K   CK +  I +S + +LG+L
Sbjct: 269 YFTPLHPLLKHQSSNHLYPILMHQKFFTCKKL--ILESLH-KLGIL 311



>ref|NP_224144.1| putative IRON(III) DICITRATE TRANSPORT PROTEIN [Helicobacter pylori
           J99]
          Length = 841

 Score = 20.4 bits (41), Expect = 7.6
 Identities = 7/19 (36%), Positives = 13/19 (67%)

Query: 36  NFKEIPCKNIQAIRDSFNW 54
           N+ +IP K+++ I+   NW
Sbjct: 531 NWMQIPEKDLRKIKHMNNW 549



>ref|NP_224123.1| putative IRON-REGULATED OUTER MEMBRANE PROTEIN [Helicobacter
          pylori J99]
          Length = 879

 Score = 20.4 bits (41), Expect = 7.6
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 32 QLYLNFKEIPCKNIQAIRDSFNWRLGV 58
          ++Y++ KE+  +    IRD F  R  V
Sbjct: 44 KMYIDRKELQQRQSNQIRDIFRTRADV 70



>ref|NP_223410.1| putative [Helicobacter pylori J99]
          Length = 235

 Score = 20.4 bits (41), Expect = 7.6
 Identities = 8/23 (34%), Positives = 14/23 (60%)

Query: 33  LYLNFKEIPCKNIQAIRDSFNWR 55
           LY   + + C+  +A  +SFN+R
Sbjct: 84  LYKGIQALNCRIDEAFLNSFNFR 106



  Database: NC_000921.faa
    Posted date:  Dec 10, 2001  4:36 PM
  Number of letters in database: 494,079
  Number of sequences in database:  1491
  
Lambda     K      H
   0.324    0.138    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,090
Number of Sequences: 1491
Number of extensions: 2291
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 63
length of database: 494,079
effective HSP length: 39
effective length of query: 24
effective length of database: 435,930
effective search space: 10462320
effective search space used: 10462320
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 40 (20.0 bits)